Rh5AG362900

Phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004032
Physical Location & Seq
Reverse (-)
61249064 .. 61253385
4322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG362900.1

Sequence Viewer

Length: 372 bp
ATGGAAGACTCATACTCTGTATGTAGTCCCAGAAGAATGAGTGTGTCAAAGAAGAGGAGGGCGGCAACAGTGTCTTTTGCAGATCCAGATGTTAAGGCTTCTGGTTTTCATGGTCCCAAACCTGCCGAAGTTTATGGCTTTGTAGGTTCCATCTCAACTGTTGTGGCTACAGTTATATTCTTGGTGTGGGCATATGTTCCAGAGTCTTGGCTACATTCAATCGGAATCTTTTACTACCCCAGCAGGTACTGGGCATTGGCAGTGCCAGCTTATGCAATGATGACTGTTGTATTAGCATTAGTATTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCCCCATCTTCCTTATATACGGTATATGGTGAGTGA

Protein Analysis

123

Amino Acids

13.61

Weight (kDa)

8.56

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-P PF08510 42 - 121 3.6e-30 PIG-P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 130, 234
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 77
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 1 cut(s) 219
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 249
AoxI GGCC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 2 cut(s) 158, 349
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 2 cut(s) 130, 234
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 115, 148
BmrI ACTGGG 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 282
BseMI GCAATG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 315
BslFI GGGAC 2 cut(s) 12, 99
BsmFI GGGAC 2 cut(s) 12, 99
BsnI GGCC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 115, 148
BspMI ACCTGC 2 cut(s) 130, 234
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 254
BssMI GATC 1 cut(s) 82
Bst4CI ACNGT 6 cut(s) 70, 160, 172, 286, 311, 358
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 267
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 207
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 75, 267
BveI ACCTGC 2 cut(s) 130, 234
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 247
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 2 cut(s) 110, 325
CviJI RGCY 6 cut(s) 98, 138, 167, 211, 269, 315
CviKI_1 RGCY 6 cut(s) 98, 138, 167, 211, 269, 315
CviQI GTAC 1 cut(s) 247
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 113
FaeI CATG 2 cut(s) 113, 328
FaqI GGGAC 2 cut(s) 12, 99
FatI CATG 2 cut(s) 109, 324
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 315
Hin1II CATG 2 cut(s) 113, 328
HinfI GANTC 3 cut(s) 8, 203, 225
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 86, 200
Hpy8I GTNNAC 1 cut(s) 330
HpyCH4III ACNGT 6 cut(s) 70, 160, 172, 286, 311, 358
HpyCH4V TGCA 2 cut(s) 80, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 113, 328
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 9 cut(s) 43, 87, 99, 135, 213, 229, 235, 253, 279
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 4 cut(s) 17, 45, 64, 336
MflI RGATCY 1 cut(s) 82
MlyI GAGTC 2 cut(s) 2, 212
MnlI CCTC 4 cut(s) 48, 51, 326, 345
MseI TTAA 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 82
NlaIII CATG 2 cut(s) 113, 328
NlaIV GGNNCC 2 cut(s) 115, 148
PfeI GAWTC 1 cut(s) 225
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 2 cut(s) 2, 211
PpsI GAGTC 2 cut(s) 2, 211
PspFI CCCAGC 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 115, 148
PspPI GGNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 249
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 2 cut(s) 2, 212
SetI ASST 4 cut(s) 124, 148, 248, 271
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 113
SsiI CCGC 1 cut(s) 62
TaaI ACNGT 6 cut(s) 70, 160, 172, 286, 311, 358
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 75, 267
TspDTI ATGAA 2 cut(s) 98, 313
TspRI CASTG 2 cut(s) 75, 267
VpaK11BI GGWCC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.