Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Reverse (-)

9182907 .. 9185010

Gene Structure 2104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1088000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGATTCATATTCTGTGTGCAGCCCCAGAAGAATACTGAGTGTATCAAAGAAGAGGAGGGCAACAGTGTCATTTGTTGATTCAGATGACAAGGCTTCTGGGTTTCATGGCCCCAAGCCTTCTGAAGTCTATGGCTTTGTTGGTTCCATCACTACTGTTGTGGCTACAGTTATATTCTTGGTGTGGGCGTATGTTCCAGAGTCTTGGTTGCATTCCATTGGGATTTTTTACTACCCCAGCAGGTATTGGGCATTGGCAGTGCCAGCTTACGCTATGATGACAGTGGTATTAGCATTGGGATTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCCCCTTCTTCCTTATATACTGTTTACGATGAATTCAGTAGAGATCCTCTGAGCTCTTCTCCAATTGGGGATGATGATCAGCCCATCGAGCCAATATCCGATATCAGCATCGACAGAATCAATCGTTCCATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

159

Amino Acids

17.65

Weight (kDa)

5.26

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-P	PF08510	42 - 157	1.6e-38	PIG-P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	269, 390
AluI	AGCT	2 cut(s)	269, 390
Alw21I	GWGCWC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	2 cut(s)	112, 313
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	2 cut(s)	158, 428
BclI	TGATCA	1 cut(s)	412
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 148
BmsI	GCATC	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
BsaBI	GATNNNNATC	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	411
BseGI	GGATG	1 cut(s)	412
BseJI	GATNNNNATC	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	32, 377
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	114, 315
BsiHKAI	GWGCWC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	114, 315
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	379, 412
BspANI	GGCC	2 cut(s)	114, 315
BspCNI	CTCAG	2 cut(s)	33, 378
BspLI	GGNNCC	2 cut(s)	115, 148
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	374
BspQI	GCTCTTC	1 cut(s)	397
BssMI	GATC	2 cut(s)	379, 412
Bst4CI	ACNGT	6 cut(s)	70, 160, 172, 286, 311, 358
Bst6I	CTCTTC	2 cut(s)	50, 397
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	41, 386
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	382, 415
BstMBI	GATC	2 cut(s)	379, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 424
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	379
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	114, 315
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	75, 267, 291
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	110, 325, 466
DdeI	CTNAG	2 cut(s)	41, 386
DpnI	GATC	2 cut(s)	381, 414
DpnII	GATC	2 cut(s)	379, 412
DraI	TTTAAA	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	50, 397
EarI	CTCTTC	2 cut(s)	50, 397
Ecl136II	GAGCTC	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	392
FaeI	CATG	3 cut(s)	113, 328, 469
FatI	CATG	3 cut(s)	109, 324, 465
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	114, 315
Hin1II	CATG	3 cut(s)	113, 328, 469
HinfI	GANTC	4 cut(s)	8, 83, 203, 453
Hpy166II	GTNNAC	2 cut(s)	330, 361
Hpy188I	TCNGA	4 cut(s)	88, 127, 387, 436
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	330, 361
HpyAV	CCTTC	2 cut(s)	132, 351
HpyCH4III	ACNGT	6 cut(s)	70, 160, 172, 286, 311, 358
HpyCH4V	TGCA	2 cut(s)	24, 214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 424
HpyF3I	CTNAG	2 cut(s)	41, 386
Hsp92II	CATG	3 cut(s)	113, 328, 469
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	379, 412
LguI	GCTCTTC	1 cut(s)	397
LpnPI	CCDG	6 cut(s)	43, 87, 213, 229, 253, 279
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	453
MalI	GATC	2 cut(s)	381, 414
MboI	GATC	2 cut(s)	379, 412
MboII	GAAGA	4 cut(s)	45, 67, 336, 384
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	368, 399
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	5 cut(s)	51, 54, 326, 345, 393
MseI	TTAA	1 cut(s)	471
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	266, 424
NdeII	GATC	2 cut(s)	379, 412
NlaIII	CATG	3 cut(s)	113, 328, 469
NlaIV	GGNNCC	2 cut(s)	115, 148
PciSI	GCTCTTC	1 cut(s)	397
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	8, 83, 453
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	115, 148
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	379, 412
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	3 cut(s)	248, 271, 392
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	368, 399
SstI	GAGCTC	1 cut(s)	392
TaaI	ACNGT	6 cut(s)	70, 160, 172, 286, 311, 358
TaqI	TCGA	2 cut(s)	423, 447
TasI	AATT	2 cut(s)	368, 399
TfiI	GAWTC	3 cut(s)	8, 83, 453
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	3 cut(s)	75, 267, 291
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	3 cut(s)	98, 313, 381
TspRI	CASTG	3 cut(s)	75, 267, 291
XapI	RAATTY	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.