Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Forward (+)

30511444 .. 30513953

Gene Structure 2510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028948

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAGACTCATACTCTGTTTGTAGTCCCAGAAGAATTCTGAGTGTGTCAAAGAAGAGGAGGGAGGCAACAGTGTCCTTTGCAGATGCTGATATTAAGGCTTCTGGGTTTCATGGTCCCAAACCTGCTGAAGTTTATGGCTTTGTGGGTTCTATCACAACTGTTGTGGCTACAGTTATTCTCTTGGTGTGGGCGTATGTGCCAGAGTTTTGGCTACATTGGATTGGAATCTTTTACTATCCCAGCAGGTATTGGGCATTGGCTGTGCCAGCTTATGCAATGATGACTGTGGTCCTGGCATTAGTATTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCGCCATCCTCCTTATCTACAGTATATGATGAATTTAGTAGAGATCCTGTAAGCTCTGGTCAAATGGCTGGTGATGATCAACTAATTGAACCCATATCTGATATCACCATTGACAAAATCAATCGTTCCATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

160

Amino Acids

17.77

Weight (kDa)

5.61

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-P	PF08510	43 - 158	1.4e-37	PIG-P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	133, 237
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	36, 371
AcuI	CTGAAG	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	2 cut(s)	272, 393
AluI	AGCT	2 cut(s)	272, 393
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	36, 371
AspS9I	GGNCC	2 cut(s)	116, 292
AsuHPI	GGTGA	2 cut(s)	422, 436
AvaII	GGWCC	2 cut(s)	116, 292
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	415
BfmI	CTRYAG	2 cut(s)	171, 357
BfuAI	ACCTGC	2 cut(s)	133, 237
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	116, 292
BmgT120I	GGNCC	2 cut(s)	116, 292
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	76
BoxI	GACNNNNGTC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	344
BseJI	GATNNNNATC	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	12, 102
BsmFI	GGGAC	2 cut(s)	12, 102
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	382, 415
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	2 cut(s)	133, 237
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	285
BssMI	GATC	2 cut(s)	382, 415
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	344
BstKTI	GATC	2 cut(s)	385, 418
BstMBI	GATC	2 cut(s)	382, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	296
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	2 cut(s)	171, 357
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	2 cut(s)	133, 237
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	116, 292
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	3 cut(s)	113, 328, 469
CviJI	RGCY	9 cut(s)	101, 141, 170, 214, 263, 272, 318, 393, 407
CviKI_1	RGCY	9 cut(s)	101, 141, 170, 214, 263, 272, 318, 393, 407
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	384, 417
DpnII	GATC	2 cut(s)	382, 415
DraI	TTTAAA	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	116, 292
Eco57I	CTGAAG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	3 cut(s)	116, 331, 472
FaqI	GGGAC	2 cut(s)	12, 102
FatI	CATG	3 cut(s)	112, 327, 468
FbaI	TGATCA	1 cut(s)	415
FokI	GGATG	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	116, 331, 472
HinfI	GANTC	2 cut(s)	8, 228
HphI	GGTGA	2 cut(s)	422, 436
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	42, 439
Hpy8I	GTNNAC	1 cut(s)	333
HpyCH4III	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
HpyCH4V	TGCA	2 cut(s)	83, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	116, 331, 472
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	382, 415
LweI	GCATC	1 cut(s)	76
MalI	GATC	2 cut(s)	384, 417
MboI	GATC	2 cut(s)	382, 415
MboII	GAAGA	3 cut(s)	17, 45, 67
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	3 cut(s)	36, 371, 423
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	6 cut(s)	51, 54, 58, 329, 348, 358
MseI	TTAA	2 cut(s)	96, 474
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	2 cut(s)	382, 415
NlaIII	CATG	3 cut(s)	116, 331, 472
NlaIV	GGNNCC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PshAI	GACNNNNGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	116, 292
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	96, 474
Sau3AI	GATC	2 cut(s)	382, 415
Sau96I	GGNCC	2 cut(s)	116, 292
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	4 cut(s)	127, 251, 274, 395
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	2 cut(s)	171, 357
SinI	GGWCC	2 cut(s)	116, 292
Sse9I	AATT	3 cut(s)	36, 371, 423
SsiI	CCGC	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
TasI	AATT	3 cut(s)	36, 371, 423
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	96, 474
Tru9I	TTAA	2 cut(s)	96, 474
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	3 cut(s)	101, 316, 384
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	116, 292
XapI	RAATTY	2 cut(s)	36, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.