Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007032.1

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Reverse (-)

23014 .. 26208

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007032.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggaagactcatactctgtttgtagtcccagaagaattctgagtgtgtcaaagaagaggagggaggcaacagtgtcctttgcagatgctgatattaaggcttctgggtttcacggtcccaaacctgctgaagtgtatggctttgtgggttctatcacaactgttgtggctacagttattctcttggtgtgggcatatgtgccagagtcttggctacattggattggaatcttttactaccccagcaggtattgggcattggctgtgccagcttatgcaatgatgactgtggtactggcattagtatcttactgtggcctcaacttcatgtccacccctccgccatcctccttatatacagtatatgatgaatttagtagagatcctgtaagctctggtcaaatggctggtgatgatcaactcattgaacccatatctgatatcatccttggtcaggctatggtgcttgtgttcttggtcctctggcatgcccttgttgttggattccagcttgtcttggagccgtctatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

177

Amino Acids

19.58

Weight (kDa)

5.02

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	133, 237
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	36, 371
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	428
AluBI	AGCT	3 cut(s)	272, 393, 511
AluI	AGCT	3 cut(s)	272, 393, 511
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	36, 371
AspS9I	GGNCC	2 cut(s)	116, 478
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	2 cut(s)	116, 478
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	415
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	2 cut(s)	133, 237
Bme18I	GGWCC	2 cut(s)	116, 478
BmgT120I	GGNCC	2 cut(s)	116, 478
BmiI	GGNNCC	2 cut(s)	118, 522
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	344, 444
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	12, 102
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmFI	GGGAC	2 cut(s)	12, 102
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	382, 415
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	118, 522
BspMI	ACCTGC	2 cut(s)	133, 237
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	382, 415
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	7 cut(s)	73, 116, 163, 175, 289, 314, 361
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	270, 489
BstDEI	CTNAG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	344, 444
BstKTI	GATC	2 cut(s)	385, 418
BstMBI	GATC	2 cut(s)	382, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	344, 444
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	2 cut(s)	133, 237
Cac8I	GCNNGC	2 cut(s)	270, 489
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	116, 478
Csp6I	GTAC	1 cut(s)	293
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	2 cut(s)	328, 488
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	384, 417
DpnII	GATC	2 cut(s)	382, 415
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	116, 478
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	331, 491
FaqI	GGGAC	2 cut(s)	12, 102
FatI	CATG	2 cut(s)	327, 487
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	415
FokI	GGATG	2 cut(s)	331, 431
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	331, 491
HinfI	GANTC	4 cut(s)	8, 206, 228, 504
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	42, 439
Hpy8I	GTNNAC	1 cut(s)	333
HpyCH4III	ACNGT	7 cut(s)	73, 116, 163, 175, 289, 314, 361
HpyCH4V	TGCA	2 cut(s)	83, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	331, 491
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	382, 415
LmnI	GCTCC	1 cut(s)	520
LweI	GCATC	1 cut(s)	76
MalI	GATC	2 cut(s)	384, 417
MboI	GATC	2 cut(s)	382, 415
MboII	GAAGA	3 cut(s)	17, 45, 67
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	2 cut(s)	36, 371
MlyI	GAGTC	2 cut(s)	2, 215
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	51, 54, 58, 329, 348, 358, 491
MseI	TTAA	2 cut(s)	96, 532
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	382, 415
NlaIII	CATG	2 cut(s)	331, 491
NlaIV	GGNNCC	2 cut(s)	118, 522
NspI	RCATGY	1 cut(s)	491
PaeI	GCATGC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	228, 504
PleI	GAGTC	2 cut(s)	2, 214
PpsI	GAGTC	2 cut(s)	2, 214
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	118, 522
PspPI	GGNCC	2 cut(s)	116, 478
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	96, 532
Sau3AI	GATC	2 cut(s)	382, 415
Sau96I	GGNCC	2 cut(s)	116, 478
SchI	GAGTC	2 cut(s)	2, 215
SetI	ASST	5 cut(s)	127, 251, 274, 395, 513
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	116, 478
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	2 cut(s)	36, 371
SsiI	CCGC	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	7 cut(s)	73, 116, 163, 175, 289, 314, 361
TasI	AATT	2 cut(s)	36, 371
TfiI	GAWTC	2 cut(s)	228, 504
Tru1I	TTAA	2 cut(s)	96, 532
Tru9I	TTAA	2 cut(s)	96, 532
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	316, 384
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	116, 478
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	2 cut(s)	36, 371
XceI	RCATGY	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.