Rw1G015330

Phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004032
Physical Location & Seq
Reverse (-)
34167359 .. 34169858
2500 bp
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UTR
Exon/CDS
Intron
Rw1G015330.1

Sequence Viewer

Length: 435 bp
ATGGAAGACTCATACTCTGTTTGTAGTCCCAGAAGAATTCTGAGTGTGTCAAAGAAGAGGAGGGAGGCAACAGTGTCCTTTGCAGATGCTGATATTAAGGCTTCTGGGTTTCACGGTCCCAAACCTGCTGAATTATTCTTGGTGTGGGCATATGTGCCAGAGTCTTGGCTACATTGGATTGGAATCTTTTACTACCCCAGCAGGTATGGGCTTGGCTGTGCCAGCTTATGCAATGATGACTGTGGTACTGGCATTAGTATCTTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCGCCATCCTCCTTATATACAGTATATGATGAATTTAGTAGAGATCCTGTAAGCTCTGGTCAAATGGCTGGTGATGATCAACTCATTGAACCCATATCTGATATCAGTATTGACAAAATCAATCGTTCCATGTTTAAATAA

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

5.05

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-P PF08510 45 - 143 5.7e-17 PIG-P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 133, 192
AciI CCGC 1 cut(s) 296
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 36, 326
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 1 cut(s) 383
AluBI AGCT 2 cut(s) 225, 348
AluI AGCT 2 cut(s) 225, 348
AlwI GGATC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 1 cut(s) 271
ApoI RAATTY 2 cut(s) 36, 326
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 307
BclI TGATCA 1 cut(s) 370
BfuAI ACCTGC 2 cut(s) 133, 192
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 118
BmsI GCATC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 182
BseGI GGATG 1 cut(s) 299
BseJI GATNNNNATC 1 cut(s) 182
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 1 cut(s) 273
BslFI GGGAC 2 cut(s) 12, 102
BsmFI GGGAC 2 cut(s) 12, 102
BsnI GGCC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 337, 370
BspACI CCGC 1 cut(s) 296
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 2 cut(s) 133, 192
BspPI GGATC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 238
BsrI ACTGG 1 cut(s) 253
BssMI GATC 2 cut(s) 337, 370
Bst4CI ACNGT 5 cut(s) 73, 116, 242, 269, 316
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 2 cut(s) 340, 373
BstMBI GATC 2 cut(s) 337, 370
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 165
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 78
BveI ACCTGC 2 cut(s) 133, 192
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 283, 424
CviJI RGCY 8 cut(s) 101, 169, 211, 216, 225, 273, 348, 362
CviKI_1 RGCY 8 cut(s) 101, 169, 211, 216, 225, 273, 348, 362
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 339, 372
DpnII GATC 2 cut(s) 337, 370
DraI TTTAAA 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 285
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 36
EcoRV GATATC 1 cut(s) 397
FaeI CATG 2 cut(s) 286, 427
FaqI GGGAC 2 cut(s) 12, 102
FatI CATG 2 cut(s) 282, 423
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 370
FokI GGATG 1 cut(s) 286
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 273
Hin1II CATG 2 cut(s) 286, 427
HinfI GANTC 3 cut(s) 8, 161, 183
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 42, 394
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4III ACNGT 5 cut(s) 73, 116, 242, 269, 316
HpyCH4V TGCA 2 cut(s) 83, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 2 cut(s) 286, 427
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 337, 370
LweI GCATC 1 cut(s) 76
MalI GATC 2 cut(s) 339, 372
MboI GATC 2 cut(s) 337, 370
MboII GAAGA 3 cut(s) 17, 45, 67
MflI RGATCY 1 cut(s) 337
MluCI AATT 3 cut(s) 36, 131, 326
MlyI GAGTC 2 cut(s) 2, 170
MnlI CCTC 6 cut(s) 51, 54, 58, 284, 303, 313
MseI TTAA 2 cut(s) 96, 429
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeI CATATG 1 cut(s) 151
NdeII GATC 2 cut(s) 337, 370
NlaIII CATG 2 cut(s) 286, 427
NlaIV GGNNCC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 183
PleI GAGTC 2 cut(s) 2, 169
PpsI GAGTC 2 cut(s) 2, 169
PspFI CCCAGC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 96, 429
Sau3AI GATC 2 cut(s) 337, 370
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 2, 170
SetI ASST 4 cut(s) 127, 206, 227, 350
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 116
Sse9I AATT 3 cut(s) 36, 131, 326
SsiI CCGC 1 cut(s) 296
TaaI ACNGT 5 cut(s) 73, 116, 242, 269, 316
TasI AATT 3 cut(s) 36, 131, 326
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 96, 429
Tru9I TTAA 2 cut(s) 96, 429
TscAI CASTG 1 cut(s) 78
TspDTI ATGAA 2 cut(s) 271, 339
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 2 cut(s) 36, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.