Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001673.1

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Reverse (-)

211540 .. 216918

Gene Structure 5379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001673.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgccggtagccggattccagattccggtgaccggtcgccggattccggtcaccagagtcggcgcccgaccattggtcacaggagcccggcaagatcctcacccacttgacagattctcaaaactgtattggaatcccagaacaaaggggatggaagactcatactctgtatgtagtcccagaagaatgagtgtgtcaaagaagaggagggcggcaacagtgtcttttgcagatccagatgttaaggcttctggttttcatggtcccaaacctgctgaagtttatggctttgtaggttccatcacaactgttgtggctacagttatattcttggtgtgggcatatgttccagagtcttggctacattcaatcggaatcttttactaccccagcaggtactgggcattggcagtgccagcttatgcaatgatgactgttgtattagcattagtattttactgtggcctcaacttcatgtccacccctcccccatcttccttatatacggtatatgatgaatttagtagagatcctgtaagctctgctcgaattgccaatgatgatcaacccattgaacccatatctgatatcagtattgacagaatcaatcattccatgtttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

208

Amino Acids

23.23

Weight (kDa)

9.39

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	280, 384
AccB1I	GGYRCC	1 cut(s)	62
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	3 cut(s)	89, 227, 524
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	6 cut(s)	11, 25, 32, 39, 46, 73
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	369, 575
AhdI	GACNNNNNGTC	1 cut(s)	74
AluBI	AGCT	2 cut(s)	419, 540
AluI	AGCT	2 cut(s)	419, 540
AlwI	GGATC	3 cut(s)	89, 227, 524
AlwNI	CAGNNNCTG	1 cut(s)	399
AoxI	GGCC	1 cut(s)	463
ApoI	RAATTY	1 cut(s)	518
AsiGI	ACCGGT	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	40, 43, 92
AvaII	GGWCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	162
BccI	CCATC	3 cut(s)	145, 308, 499
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	88
BfmI	CTRYAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	66
BfuAI	ACCTGC	2 cut(s)	280, 384
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	263
BmeRI	GACNNNNNGTC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	4 cut(s)	64, 85, 265, 298
BmrFI	CCNGG	1 cut(s)	88
BmrI	ACTGGG	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	63
BsaWI	WCCGGW	3 cut(s)	25, 32, 46
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 25, 32, 39, 46, 73
Bse118I	RCCGGY	2 cut(s)	4, 32
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	6 cut(s)	11, 25, 32, 39, 46, 73
BseMI	GCAATG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	7 cut(s)	5, 12, 26, 33, 40, 47, 88
BslFI	GGGAC	2 cut(s)	162, 249
BslI	CCNNNNNNNGG	6 cut(s)	11, 25, 32, 39, 46, 73
BsmFI	GGGAC	2 cut(s)	162, 249
BsnI	GGCC	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	94, 232, 529, 562
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	465
BspLI	GGNNCC	4 cut(s)	64, 85, 265, 298
BspMI	ACCTGC	2 cut(s)	280, 384
BspPI	GGATC	3 cut(s)	89, 227, 524
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	2 cut(s)	4, 32
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	2 cut(s)	4, 32
BssMI	GATC	4 cut(s)	94, 232, 529, 562
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	7 cut(s)	126, 220, 310, 322, 436, 461, 508
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	417
BstEII	GGTNACC	2 cut(s)	28, 49
BstF5I	GGATG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	4 cut(s)	97, 235, 532, 565
BstMBI	GATC	4 cut(s)	94, 232, 529, 562
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 551
BstPI	GGTNACC	2 cut(s)	28, 49
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	3 cut(s)	94, 232, 529
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	3 cut(s)	94, 232, 529
BsuRI	GGCC	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	225, 417
BveI	ACCTGC	2 cut(s)	280, 384
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	399
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	2 cut(s)	4, 32
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	32
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	3 cut(s)	260, 475, 616
CviJI	RGCY	9 cut(s)	11, 86, 248, 288, 317, 361, 419, 465, 540
CviKI_1	RGCY	9 cut(s)	11, 86, 248, 288, 317, 361, 419, 465, 540
CviQI	GTAC	1 cut(s)	397
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	4 cut(s)	96, 234, 531, 564
DpnII	GATC	4 cut(s)	94, 232, 529, 562
DraI	TTTAAA	1 cut(s)	622
DriI	GACNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	197
Eam1105I	GACNNNNNGTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	297
Eco91I	GGTNACC	2 cut(s)	28, 49
EcoO65I	GGTNACC	2 cut(s)	28, 49
EcoRV	GATATC	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	88
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
FaeI	CATG	3 cut(s)	263, 478, 619
FaqI	GGGAC	2 cut(s)	162, 249
FatI	CATG	3 cut(s)	259, 474, 615
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	7 cut(s)	5, 12, 26, 33, 40, 47, 88
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	263, 478, 619
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HpaII	CCGG	7 cut(s)	5, 12, 26, 33, 40, 47, 88
HphI	GGTGA	3 cut(s)	40, 43, 92
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	2 cut(s)	374, 586
Hpy188III	TCNNGA	3 cut(s)	19, 236, 350
Hpy8I	GTNNAC	1 cut(s)	480
HpyCH4III	ACNGT	7 cut(s)	126, 220, 310, 322, 436, 461, 508
HpyCH4V	TGCA	2 cut(s)	230, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 551
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	263, 478, 619
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	4 cut(s)	94, 232, 529, 562
LmnI	GCTCC	1 cut(s)	83
MaeIII	GTNAC	3 cut(s)	28, 49, 76
MalI	GATC	4 cut(s)	96, 234, 531, 564
MboI	GATC	4 cut(s)	94, 232, 529, 562
MboII	GAAGA	4 cut(s)	167, 195, 214, 486
MflI	RGATCY	3 cut(s)	94, 232, 529
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	518, 549
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	3 cut(s)	66, 152, 362
MnlI	CCTC	5 cut(s)	108, 198, 201, 476, 495
MseI	TTAA	2 cut(s)	243, 621
MspI	CCGG	7 cut(s)	5, 12, 26, 33, 40, 47, 88
MspR9I	CCNGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	416, 551
NarI	GGCGCC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	88
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	4 cut(s)	94, 232, 529, 562
NlaIII	CATG	3 cut(s)	263, 478, 619
NlaIV	GGNNCC	4 cut(s)	64, 85, 265, 298
NmuCI	GTSAC	3 cut(s)	28, 49, 76
PfeI	GAWTC	7 cut(s)	15, 22, 43, 114, 133, 375, 603
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	3 cut(s)	65, 152, 361
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	3 cut(s)	65, 152, 361
PspEI	GGTNACC	2 cut(s)	28, 49
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	4 cut(s)	64, 85, 265, 298
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	399
PsuI	RGATCY	3 cut(s)	94, 232, 529
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	243, 621
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	4 cut(s)	94, 232, 529, 562
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	3 cut(s)	66, 152, 362
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	274, 298, 398, 421, 542
SfcI	CTRYAG	1 cut(s)	318
SfoI	GGCGCC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	2 cut(s)	518, 549
SsiI	CCGC	1 cut(s)	212
SspDI	GGCGCC	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	7 cut(s)	126, 220, 310, 322, 436, 461, 508
TaqI	TCGA	1 cut(s)	547
TasI	AATT	2 cut(s)	518, 549
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	7 cut(s)	15, 22, 43, 114, 133, 375, 603
Tru1I	TTAA	2 cut(s)	243, 621
Tru9I	TTAA	2 cut(s)	243, 621
TscAI	CASTG	2 cut(s)	225, 417
TseFI	GTSAC	3 cut(s)	28, 49, 76
Tsp45I	GTSAC	3 cut(s)	28, 49, 76
TspDTI	ATGAA	3 cut(s)	248, 463, 531
TspRI	CASTG	2 cut(s)	225, 417
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.