RchiOBHm_Chr5g0055501

Phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004032
Physical Location & Seq
Reverse (-)
58636188 .. 58640478
4291 bp
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UTR
Exon/CDS
Intron
PRQ33250

Sequence Viewer

Length: 477 bp
ATGGAAGACTCATACTCTATATGTAGTCCCAGAAGAATGAGTGTGTCAAAGAAGAGGAGGGCGGCAACAGTGTCTTTTGCAGATCCAGATGTTAAGGCTTCTGGTTTTCATGGTCCCAAACCTGCTGAAGTTTATGGCTTTGTAGGTTCCATCACAACTGTTGTGGCTACAGTTATATTCTTGGTGTGGGCATATGTTCCAGAGTCTTGGCTACATTCAATCGGAATCTTTTACTACCCCAGCAGGTACTGGGCATTGGCAGTGCCAGCTTATGCAATGATGACTGTTGTATTAGCATTAGTATTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCCCCATCTTCCTTATATACGGTATATGATGAATTTAGTAGAGATCCTGTAAGCTCTGCTCGAATTGCCAATGATGATCAACCCATTGAACCCATATCTGATATCAGTATTGACAGAATCAATCGTTCCATGTTTAAATAA

Protein Analysis

158

Amino Acids

17.67

Weight (kDa)

6.71

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-P PF08510 42 - 157 4e-39 PIG-P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 130, 234
AciI CCGC 1 cut(s) 62
AclWI GGATC 2 cut(s) 77, 374
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 2 cut(s) 219, 425
AluBI AGCT 2 cut(s) 269, 390
AluI AGCT 2 cut(s) 269, 390
AlwI GGATC 2 cut(s) 77, 374
AlwNI CAGNNNCTG 1 cut(s) 249
AoxI GGCC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 2 cut(s) 158, 349
BclI TGATCA 1 cut(s) 412
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 2 cut(s) 130, 234
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 115, 148
BmrI ACTGGG 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 282
BseMI GCAATG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 315
BslFI GGGAC 2 cut(s) 12, 99
BsmFI GGGAC 2 cut(s) 12, 99
BsnI GGCC 1 cut(s) 315
Bsp143I GATC 3 cut(s) 82, 379, 412
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 115, 148
BspMI ACCTGC 2 cut(s) 130, 234
BspPI GGATC 2 cut(s) 77, 374
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 254
BssMI GATC 3 cut(s) 82, 379, 412
Bst4CI ACNGT 6 cut(s) 70, 160, 172, 286, 311, 358
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 267
BstKTI GATC 3 cut(s) 85, 382, 415
BstMBI GATC 3 cut(s) 82, 379, 412
BstMWI GCNNNNNNNGC 2 cut(s) 266, 401
BstSFI CTRYAG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 82, 379
BstXI CCANNNNNNTGG 1 cut(s) 207
BstYI RGATCY 2 cut(s) 82, 379
BsuRI GGCC 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 75, 267
BveI ACCTGC 2 cut(s) 130, 234
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 247
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 3 cut(s) 110, 325, 466
CviJI RGCY 7 cut(s) 98, 138, 167, 211, 269, 315, 390
CviKI_1 RGCY 7 cut(s) 98, 138, 167, 211, 269, 315, 390
CviQI GTAC 1 cut(s) 247
DpnI GATC 3 cut(s) 84, 381, 414
DpnII GATC 3 cut(s) 82, 379, 412
DraI TTTAAA 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 147
EcoRV GATATC 1 cut(s) 439
FaeI CATG 3 cut(s) 113, 328, 469
FaqI GGGAC 2 cut(s) 12, 99
FatI CATG 3 cut(s) 109, 324, 465
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 315
Hin1II CATG 3 cut(s) 113, 328, 469
HinfI GANTC 4 cut(s) 8, 203, 225, 453
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 2 cut(s) 224, 436
Hpy188III TCNNGA 2 cut(s) 86, 200
Hpy8I GTNNAC 1 cut(s) 330
HpyCH4III ACNGT 6 cut(s) 70, 160, 172, 286, 311, 358
HpyCH4V TGCA 2 cut(s) 80, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 401
Hsp92II CATG 3 cut(s) 113, 328, 469
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 82, 379, 412
MalI GATC 3 cut(s) 84, 381, 414
MboI GATC 3 cut(s) 82, 379, 412
MboII GAAGA 4 cut(s) 17, 45, 64, 336
MflI RGATCY 2 cut(s) 82, 379
MluCI AATT 2 cut(s) 368, 399
MlyI GAGTC 2 cut(s) 2, 212
MnlI CCTC 4 cut(s) 48, 51, 326, 345
MseI TTAA 2 cut(s) 93, 471
MwoI GCNNNNNNNGC 2 cut(s) 266, 401
NdeI CATATG 1 cut(s) 193
NdeII GATC 3 cut(s) 82, 379, 412
NlaIII CATG 3 cut(s) 113, 328, 469
NlaIV GGNNCC 2 cut(s) 115, 148
PfeI GAWTC 2 cut(s) 225, 453
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 2 cut(s) 2, 211
PpsI GAGTC 2 cut(s) 2, 211
PspFI CCCAGC 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 115, 148
PspPI GGNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 249
PsuI RGATCY 2 cut(s) 82, 379
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 93, 471
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 82, 379, 412
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 2 cut(s) 2, 212
SetI ASST 5 cut(s) 124, 148, 248, 271, 392
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 113
Sse9I AATT 2 cut(s) 368, 399
SsiI CCGC 1 cut(s) 62
TaaI ACNGT 6 cut(s) 70, 160, 172, 286, 311, 358
TaqI TCGA 1 cut(s) 397
TasI AATT 2 cut(s) 368, 399
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 225, 453
Tru1I TTAA 2 cut(s) 93, 471
Tru9I TTAA 2 cut(s) 93, 471
TscAI CASTG 2 cut(s) 75, 267
TspDTI ATGAA 3 cut(s) 98, 313, 381
TspRI CASTG 2 cut(s) 75, 267
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.