Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Forward (+)

21267991 .. 21268351

Gene Structure 361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAAGACTCATACTCTGTTTGTAGTCCCAGAAGAATTCTGAGTGTGTCAAAGAAGAGGAGGGAGGCAACATTGTCCTTTGCAGATGCTGATATTAAGGCTTCTGGGTTTCACGGTCCCAAACTTGCTGAAGTGTATGGCTTTGTGGGTTCTATCACAACTGTTGTGGCTACAGTTATTCTCTTGGTGTGGGCATATGTGCCAGAGTCTTGGCTACATTGGATTGGAATCTTTTACTACCCCAGCAGGTCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

85

Amino Acids

9.53

Weight (kDa)

8.85

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-P	PF08510	43 - 83	6.6e-14	PIG-P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	227
BseJI	GATNNNNATC	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	12, 102
BsmFI	GGGAC	2 cut(s)	12, 102
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	116, 163, 175
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviJI	RGCY	4 cut(s)	101, 141, 170, 214
CviKI_1	RGCY	4 cut(s)	101, 141, 170, 214
DdeI	CTNAG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	36
FaiI	YATR	5 cut(s)	13, 138, 196, 198, 256
FaqI	GGGAC	2 cut(s)	12, 102
FauNDI	CATATG	1 cut(s)	196
GsaI	CCCAGC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	8, 206, 228
Hpy188I	TCNGA	1 cut(s)	42
HpyCH4III	ACNGT	3 cut(s)	116, 163, 175
HpyCH4V	TGCA	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	41
LpnPI	CCDG	4 cut(s)	43, 90, 216, 232
LweI	GCATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	17, 45, 67
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	2, 215
MnlI	CCTC	3 cut(s)	51, 54, 58
MseI	TTAA	1 cut(s)	96
NdeI	CATATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	228
PleI	GAGTC	2 cut(s)	2, 214
PpsI	GAGTC	2 cut(s)	2, 214
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	2, 215
SetI	ASST	1 cut(s)	251
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	171
SgeI	CNNG	7 cut(s)	42, 117, 125, 137, 196, 215, 222
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	116, 163, 175
TasI	AATT	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.