FvH4_5g32310

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004086
Physical Location & Seq
Reverse (-)
23326182 .. 23328133
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32310.t1

Sequence Viewer

Length: 579 bp
ATGATGTCTTGTTGTTCAGCTGCATCCAGTGGGTCGCTGCTCTCCTCCGAATCGCTCCCAACTCGTTCGACTCAGCCACTCAAACCAGCTTCGCTTTCATGGGTATCTTCGTTTCCTCTCATCAACATTTCCATGACCTCCACAACCCTCCCTCCCACTCCCACCCCTCCCACCCCCAACAAGATGTCAATTGTCTGCGCTGCATATACACGGAGATCTCGAAGTGAAGCTGCTAAAAGACCAAACAGGAAGTCGTGGAAACAGAAGACAGATATGTATATGAGGCCATTCTTACTGAACGTTTTCTTTTCCAAAAAATTTATCCATGCAAAAGTGATGCATCGGGGAACAAGCAAAGTGATTTCAGTTGCTACCACAAATGCGAAGGATCTTCGGACTAACTTACCATCACTCACAGATCATAATGCATGCAGAGTTATCGGGAGGCTTATTGCTGAGCGATCCAAGGAGGCAGATGTATATGCATTGTCTTACGAACCCAGGAAAGAGGAGCGAATTGAAGGTAAGCTCGGGATTGTTCTTGATACCATTAAAGAAAATGGCATCTTATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

193

Amino Acids

21.34

Weight (kDa)

10.06

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 86 - 191 6.7e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 300
AclWI GGATC 2 cut(s) 396, 456
AcsI RAATTY 1 cut(s) 317
AgsI TTSAA 1 cut(s) 521
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 4 cut(s) 20, 89, 230, 529
AluI AGCT 4 cut(s) 20, 89, 230, 529
AlwI GGATC 2 cut(s) 396, 456
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 4 cut(s) 20, 37, 200, 230
ApoI RAATTY 1 cut(s) 317
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
Asp700I GAANNNNTTC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 7, 24, 187, 217
BccI CCATC 1 cut(s) 415
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 1 cut(s) 502
BglII AGATCT 1 cut(s) 215
BisI GCNGC 4 cut(s) 21, 38, 201, 231
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 4 cut(s) 22, 39, 202, 232
Bme1390I CCNGG 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 530
BmrFI CCNGG 1 cut(s) 502
BmsI GCATC 4 cut(s) 32, 327, 349, 573
BpiI GAAGAC 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 465, 500
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 2 cut(s) 465, 500
BseGI GGATG 1 cut(s) 23
BseMII CTCAG 2 cut(s) 86, 447
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 34, 524
BseXI GCAGC 4 cut(s) 7, 24, 187, 217
BshFI GGCC 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 530
BsnI GGCC 1 cut(s) 286
BsoBI CYCGRG 1 cut(s) 530
Bsp143I GATC 4 cut(s) 215, 388, 418, 461
Bsp1720I GCTNAGC 1 cut(s) 456
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 85, 448
BspPI GGATC 2 cut(s) 396, 456
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 465, 500
BssMI GATC 4 cut(s) 215, 388, 418, 461
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 2 cut(s) 72, 456
BstF5I GGATG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 4 cut(s) 218, 391, 421, 464
BstMBI GATC 4 cut(s) 215, 388, 418, 461
BstNI CCWGG 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 500
BstV1I GCAGC 4 cut(s) 7, 24, 187, 217
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 2 cut(s) 215, 388
BstYI RGATCY 2 cut(s) 215, 388
BsuRI GGCC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 430
CfoI GCGC 1 cut(s) 200
CviAII CATG 4 cut(s) 99, 133, 326, 429
CviJI RGCY 7 cut(s) 20, 76, 89, 230, 286, 448, 529
CviKI_1 RGCY 7 cut(s) 20, 76, 89, 230, 286, 448, 529
DdeI CTNAG 2 cut(s) 72, 456
DpnI GATC 4 cut(s) 217, 390, 420, 463
DpnII GATC 4 cut(s) 215, 388, 418, 461
Eco130I CCWWGG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 3 cut(s) 342, 430, 487
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 4 cut(s) 102, 136, 329, 432
FatI CATG 4 cut(s) 98, 132, 325, 428
Fnu4HI GCNGC 4 cut(s) 21, 38, 201, 231
FokI GGATG 1 cut(s) 10
Fsp4HI GCNGC 4 cut(s) 21, 38, 201, 231
GlaI GCGC 1 cut(s) 199
GluI GCNGC 4 cut(s) 21, 38, 201, 231
HaeIII GGCC 1 cut(s) 286
HhaI GCGC 1 cut(s) 200
Hin1II CATG 4 cut(s) 102, 136, 329, 432
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 2 cut(s) 50, 70
Hpy188I TCNGA 2 cut(s) 49, 396
Hpy188III TCNNGA 4 cut(s) 219, 442, 532, 542
HpyAV CCTTC 2 cut(s) 379, 515
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 7 cut(s) 23, 203, 329, 340, 428, 432, 485
HpyF3I CTNAG 2 cut(s) 72, 456
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 102, 136, 329, 432
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 4 cut(s) 215, 388, 418, 461
LmnI GCTCC 2 cut(s) 60, 511
LpnPI CCDG 5 cut(s) 40, 99, 232, 487, 514
Lsp1109I GCAGC 4 cut(s) 7, 24, 187, 217
LweI GCATC 4 cut(s) 32, 327, 349, 573
MaeII ACGT 1 cut(s) 300
MalI GATC 4 cut(s) 217, 390, 420, 463
MboI GATC 4 cut(s) 215, 388, 418, 461
MboII GAAGA 3 cut(s) 99, 277, 383
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 2 cut(s) 215, 388
MluCI AATT 3 cut(s) 189, 317, 516
MlyI GAGTC 1 cut(s) 64
Mph1103I ATGCAT 3 cut(s) 342, 430, 487
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 502
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 502
NdeII GATC 4 cut(s) 215, 388, 418, 461
NlaIII CATG 4 cut(s) 102, 136, 329, 432
NsiI ATGCAT 3 cut(s) 342, 430, 487
NspI RCATGY 1 cut(s) 432
PaeI GCATGC 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 4 cut(s) 22, 39, 202, 232
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp1406I AACGTT 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 500
PsuI RGATCY 2 cut(s) 215, 388
PvuII CAGCTG 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 4 cut(s) 21, 38, 201, 231
Sau3AI GATC 4 cut(s) 215, 388, 418, 461
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 502
SetI ASST 7 cut(s) 22, 91, 140, 232, 303, 526, 531
SfaNI GCATC 4 cut(s) 32, 327, 349, 573
SmiMI CAYNNNNRTG 1 cut(s) 131
SphI GCATGC 1 cut(s) 432
Sse9I AATT 3 cut(s) 189, 317, 516
StyD4I CCNGG 1 cut(s) 500
StyI CCWWGG 1 cut(s) 465
TaiI ACGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 68, 220
TasI AATT 3 cut(s) 189, 317, 516
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 1 cut(s) 34
TseI GCWGC 4 cut(s) 20, 37, 200, 230
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 302
Zsp2I ATGCAT 3 cut(s) 342, 430, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.