Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024296.1

Orthogroup ID

OG0004086

Physical Location & Seq

Genomic Coordinates Forward (+)

707 .. 2238

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024296.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgggttgcatagctcctccctcatgtggttcgctaagacccatccagctttcgtgggcatcttcttttccgaagcctcccatctccttcaattgcaccacaacctctcccaatctcattcactcacccaacaaggtttccttcgttcgagctgcatggacccggagatctcgaggcgaggctgcaaaaagacctaataagaaatcatggggtcaacggacagatatgttcctaaggccatttttactggatgttttcttttcaaaacgatttatccatgccaaagtgatgcaccgtggtaccagcaaagtaatatctgtggcaagcacaaatgccaaggatttgagatttacactgccgtcgcttaccgatgacaatgcttgtcgagttataggaagcctgattgcagagaggtccaaggatgctgatgtatttgcgatgtcttttgagcccaaaaagaatgagaagattgagggtaggctcggacttgttcttgataccattaaagagaacggtatcatttttgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

176

Amino Acids

19.63

Weight (kDa)

10.25

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20230
fragaria_vesca	FvH4_5g32310 FvH4_7g08610
malus_domestica	MD07G1087000.v1.1 MD15G1410900.v1.1
prunus_persica	Prupe.1G551700_v2.0.a1 Prupe.2G113900_v2.0.a1
pyrus_communis	pycom07g06940 pycom15g36570
rosa_chinensis	RchiOBHm_Chr1g0343581 RchiOBHm_Chr7g0228601
rosa_laevigata	RLG00000001552 RLG00000028962
rosa_multiflora	Rmu_co8418143.1_g000001 Rmu_sc0000335.1_g000006 Rmu_sc0006972.1_g000001 Rmu_sc0024296.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231030 Rroxscaffold_4G00310460 Rroxscaffold_4G00310640
rosa_rugosa	Rorug01G0167600 Rorug07G0250700.1 Rorug07G0250800 Rorug07G0250900
rosa_samantha	Rh1AG183800 Rh1BG150900 Rh1CG170700 Rh1DG182700 Rh7BG383800 Rh7CG422300 Rh7DG398600
rosa_wichuraiana	Rw1G015210 Rw7G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	91, 264
AluBI	AGCT	3 cut(s)	14, 49, 152
AluI	AGCT	3 cut(s)	14, 49, 152
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	152, 182
Asp718I	GGTACC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	159, 414
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	159, 414
AxyI	CCTNAGG	1 cut(s)	233
BaeI	ACNNNNGTAYC	2 cut(s)	283, 316
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	139, 169
BccI	CCATC	2 cut(s)	50, 89
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcnI	CCSGG	1 cut(s)	163
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	2 cut(s)	153, 183
BlsI	GCNGC	2 cut(s)	154, 184
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	159, 414
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	159, 414
BmiI	GGNNCC	2 cut(s)	161, 301
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	3 cut(s)	68, 279, 412
BpuMI	CCSGG	1 cut(s)	163
BsaJI	CCNNGG	3 cut(s)	295, 336, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	252
Bse21I	CCTNAGG	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	295, 336, 417
BseGI	GGATG	3 cut(s)	42, 256, 427
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	139, 169
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	26
BsnI	GGCC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	161, 301
BspT107I	GGYRCC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	3 cut(s)	295, 336, 417
BssMI	GATC	1 cut(s)	167
BssT1I	CCWWGG	2 cut(s)	336, 417
Bst4CI	ACNGT	2 cut(s)	296, 515
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	35, 233
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	42, 256, 427
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	139, 169
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
Bsu36I	CCTNAGG	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	42, 256, 427
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	159, 414
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	4 cut(s)	24, 156, 207, 278
CviJI	RGCY	9 cut(s)	14, 49, 76, 152, 182, 238, 399, 451, 481
CviKI_1	RGCY	9 cut(s)	14, 49, 76, 152, 182, 238, 399, 451, 481
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	35, 233
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	336, 417
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	159, 414
Eco81I	CCTNAGG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	336, 417
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	336, 417
FaeI	CATG	4 cut(s)	27, 159, 210, 281
FaiI	YATR	7 cut(s)	11, 25, 157, 208, 227, 279, 392
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	4 cut(s)	23, 155, 206, 277
Fnu4HI	GCNGC	2 cut(s)	153, 183
FokI	GGATG	3 cut(s)	29, 263, 434
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	153, 183
GluI	GCNGC	2 cut(s)	153, 183
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	4 cut(s)	27, 159, 210, 281
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	72, 485
Hpy188III	TCNNGA	2 cut(s)	171, 494
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	97, 151
HpyCH4III	ACNGT	2 cut(s)	296, 515
HpyCH4V	TGCA	6 cut(s)	9, 96, 155, 185, 292, 407
HpyF3I	CTNAG	2 cut(s)	35, 233
Hsp92II	CATG	4 cut(s)	27, 159, 210, 281
KpnI	GGTACC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	59, 176, 233, 316, 413
Lsp1109I	GCAGC	2 cut(s)	139, 169
LweI	GCATC	3 cut(s)	68, 279, 412
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	2 cut(s)	54, 478
MfeI	CAATTG	1 cut(s)	91
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	8 cut(s)	27, 31, 87, 115, 167, 172, 405, 466
MseI	TTAA	1 cut(s)	504
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	4 cut(s)	27, 159, 210, 281
NlaIV	GGNNCC	2 cut(s)	161, 301
PaeR7I	CTCGAG	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	154, 184
PspN4I	GGNNCC	2 cut(s)	161, 301
PspPI	GGNCC	2 cut(s)	159, 414
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	2 cut(s)	153, 183
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	2 cut(s)	159, 414
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	7 cut(s)	16, 51, 107, 138, 154, 196, 416
SfaNI	GCATC	3 cut(s)	68, 279, 412
Sfr274I	CTCGAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	159, 414
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	2 cut(s)	336, 417
TaaI	ACNGT	2 cut(s)	296, 515
TaqI	TCGA	3 cut(s)	148, 172, 385
TasI	AATT	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	2 cut(s)	152, 182
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	360
VpaK11BI	GGWCC	2 cut(s)	159, 414
XhoI	CTCGAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.