Rmu_co8418143.1_g000001

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8418143.1
OG0004086
Physical Location & Seq
Forward (+)
172 .. 573
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8418143.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atgcaggtttccttcgttcgagctgcatggacccggagatctcgaggcgaggctgcaaaaagacctaataagaaatcatggggtcaacggacagatatgttcctaaggccatttttactggatgttttcttttcaaaacgatttatccatgccaaagtgatgcaccgtggtaccagcaaagtaatatctgtggcaagcacaaatgccaaggatttgagatttacactgccgtcgcttaccgatgacaatgcttgtcgagttataggaagcctgattgcagagaggtccaaggatgctgatgtatttgcgatgtcttttgagcccaaaaagaatgagaagattgagggtaggctcggacttgttcttgataccattaaagagaacggtatcatttttgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

133

Amino Acids

15.12

Weight (kDa)

10.42

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 1 cut(s) 135
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 23, 53
Asp718I GGTACC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 30, 285
AsuC2I CCSGG 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 42
AvaII GGWCC 2 cut(s) 30, 285
AxyI CCTNAGG 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 10, 40
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BcnI CCSGG 1 cut(s) 34
BglII AGATCT 1 cut(s) 38
BisI GCNGC 2 cut(s) 24, 54
BlsI GCNGC 2 cut(s) 25, 55
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 2 cut(s) 30, 285
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 30, 285
BmiI GGNNCC 2 cut(s) 32, 172
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 150, 283
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 3 cut(s) 166, 207, 288
Bse1I ACTGG 1 cut(s) 123
Bse21I CCTNAGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 166, 207, 288
BseGI GGATG 2 cut(s) 127, 298
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 10, 40
BshFI GGCC 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 34
BsnI GGCC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 38
BspANI GGCC 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 32, 172
BspT107I GGYRCC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 166, 207, 288
BssMI GATC 1 cut(s) 38
BssT1I CCWWGG 2 cut(s) 207, 288
Bst4CI ACNGT 2 cut(s) 167, 386
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 127, 298
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 10, 40
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
Bsu36I CCTNAGG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 127, 298
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 30, 285
Csp6I GTAC 1 cut(s) 171
CviAII CATG 3 cut(s) 27, 78, 149
CviJI RGCY 6 cut(s) 23, 53, 109, 270, 322, 352
CviKI_1 RGCY 6 cut(s) 23, 53, 109, 270, 322, 352
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 207, 288
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 30, 285
Eco81I CCTNAGG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 207, 288
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 207, 288
FaeI CATG 3 cut(s) 30, 81, 152
FaiI YATR 5 cut(s) 28, 79, 98, 150, 263
FatI CATG 3 cut(s) 26, 77, 148
Fnu4HI GCNGC 2 cut(s) 24, 54
FokI GGATG 2 cut(s) 134, 305
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 24, 54
GluI GCNGC 2 cut(s) 24, 54
HaeIII GGCC 1 cut(s) 109
HapII CCGG 1 cut(s) 34
Hin1II CATG 3 cut(s) 30, 81, 152
HincII GTYRAC 1 cut(s) 86
HindII GTYRAC 1 cut(s) 86
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 2 cut(s) 42, 365
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 167, 386
HpyCH4V TGCA 5 cut(s) 4, 26, 56, 163, 278
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 3 cut(s) 30, 81, 152
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 47, 104, 187, 284
Lsp1109I GCAGC 2 cut(s) 10, 40
LweI GCATC 2 cut(s) 150, 283
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 349
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 324
MnlI CCTC 4 cut(s) 38, 43, 276, 337
MseI TTAA 1 cut(s) 375
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 34
NciI CCSGG 1 cut(s) 34
NdeII GATC 1 cut(s) 38
NlaIII CATG 3 cut(s) 30, 81, 152
NlaIV GGNNCC 2 cut(s) 32, 172
PaeR7I CTCGAG 1 cut(s) 42
PkrI GCNGC 2 cut(s) 25, 55
PspN4I GGNNCC 2 cut(s) 32, 172
PspPI GGNCC 2 cut(s) 30, 285
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 24, 54
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 2 cut(s) 30, 285
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 324
SetI ASST 4 cut(s) 9, 25, 67, 287
SfaNI GCATC 2 cut(s) 150, 283
Sfr274I CTCGAG 1 cut(s) 42
SinI GGWCC 2 cut(s) 30, 285
SlaI CTCGAG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 2 cut(s) 207, 288
TaaI ACNGT 2 cut(s) 167, 386
TaqI TCGA 3 cut(s) 19, 43, 256
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 231
TseI GCWGC 2 cut(s) 23, 53
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 2 cut(s) 30, 285
XhoI CTCGAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.