RLG00000001552

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004086
Physical Location & Seq
Forward (+)
17372439 .. 17374170
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001552

Sequence Viewer

Length: 564 bp
ATGTCTTGTTCAGCTGCATCAAGTGGGTCGCTGCTCTCCTCCGAATTGCTCCCAACTCGTTCGACTCAGCGAGTTAAACCAGCTTCGCTTTCATGGGTTTCTTCGTTTCCTCTGATGAACATTTCCATGACCTCCACAACACTCCCTGCCACTCCCACACCCAACAAGATGTCAATTGTATGTGCTGCATATACCCGGAGATCTCGAGGTGAAGCTGCTAAAAGACCAAACAGGAAGTCATGGAAACAGAAGACAGATATGTATATGAGGCCATTCTTACTAAACGTTTTCTTTTCCAAAAAATTTATCCATGCAAAAGTGATGCATCGGGGAACAAGCAAAGTGATATCAGTCGCAACAACGAATGCGAAGGATCTTCGGACCAACTTACCATCACTCACAGATCATAATGCATGCAGAGTTATTGGGAGGCTTATCGCTGAGCGGTCCAAGGAGGCAGATGTATATGCATTGTCTTACGAACCCAGGAAAGATGAACGAATTGAAGGTAAGCTCGGGATTGTTCTTGATACCATTAAAGAAAATGGGATCTTATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

188

Amino Acids

20.82

Weight (kDa)

10.23

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 85 - 186 8.6e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 445
AciI CCGC 1 cut(s) 445
AclI AACGTT 1 cut(s) 285
AclWI GGATC 2 cut(s) 381, 557
AcsI RAATTY 1 cut(s) 302
AgsI TTSAA 1 cut(s) 506
AjnI CCWGG 1 cut(s) 485
AluBI AGCT 4 cut(s) 14, 83, 215, 514
AluI AGCT 4 cut(s) 14, 83, 215, 514
AlwI GGATC 2 cut(s) 381, 557
Ama87I CYCGRG 2 cut(s) 204, 515
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 4 cut(s) 14, 31, 185, 215
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AspS9I GGNCC 2 cut(s) 381, 447
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 2 cut(s) 204, 515
AvaII GGWCC 2 cut(s) 381, 447
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 18, 172, 202
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 487
BcnI CCSGG 1 cut(s) 196
BglII AGATCT 1 cut(s) 200
BisI GCNGC 4 cut(s) 15, 32, 186, 216
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 4 cut(s) 16, 33, 187, 217
Bme1390I CCNGG 2 cut(s) 196, 487
Bme18I GGWCC 2 cut(s) 381, 447
BmeT110I CYCGRG 2 cut(s) 204, 515
BmgT120I GGNCC 2 cut(s) 381, 447
BmrFI CCNGG 2 cut(s) 196, 487
BmsI GCATC 3 cut(s) 26, 312, 334
BpiI GAAGAC 1 cut(s) 257
Bpu1102I GCTNAGC 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 450, 485
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 450, 485
BseMII CTCAG 2 cut(s) 80, 432
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 18, 172, 202
BshFI GGCC 1 cut(s) 271
BsiHKCI CYCGRG 2 cut(s) 204, 515
BsiSI CCGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 2 cut(s) 204, 515
Bsp143I GATC 4 cut(s) 200, 373, 403, 549
Bsp1720I GCTNAGC 1 cut(s) 441
BspACI CCGC 1 cut(s) 445
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 2 cut(s) 79, 433
BspPI GGATC 2 cut(s) 381, 557
BsrBI CCGCTC 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 450, 485
BssMI GATC 4 cut(s) 200, 373, 403, 549
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 66, 441
BstKTI GATC 4 cut(s) 203, 376, 406, 552
BstMBI GATC 4 cut(s) 200, 373, 403, 549
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 417
BstSCI CCNGG 2 cut(s) 194, 485
BstV1I GCAGC 3 cut(s) 18, 172, 202
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 3 cut(s) 200, 373, 549
BstYI RGATCY 3 cut(s) 200, 373, 549
BsuRI GGCC 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 381, 447
CviAII CATG 5 cut(s) 93, 127, 240, 311, 414
CviJI RGCY 6 cut(s) 14, 83, 215, 271, 433, 514
CviKI_1 RGCY 6 cut(s) 14, 83, 215, 271, 433, 514
DdeI CTNAG 2 cut(s) 66, 441
DpnI GATC 4 cut(s) 202, 375, 405, 551
DpnII GATC 4 cut(s) 200, 373, 403, 549
Eco130I CCWWGG 1 cut(s) 450
Eco32I GATATC 1 cut(s) 348
Eco47I GGWCC 2 cut(s) 381, 447
Eco88I CYCGRG 2 cut(s) 204, 515
EcoRII CCWGG 1 cut(s) 485
EcoRV GATATC 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 450
EcoT22I ATGCAT 3 cut(s) 327, 415, 472
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 5 cut(s) 96, 130, 243, 314, 417
FatI CATG 5 cut(s) 92, 126, 239, 310, 413
Fnu4HI GCNGC 4 cut(s) 15, 32, 186, 216
Fsp4HI GCNGC 4 cut(s) 15, 32, 186, 216
GluI GCNGC 4 cut(s) 15, 32, 186, 216
HaeIII GGCC 1 cut(s) 271
HapII CCGG 1 cut(s) 196
Hin1II CATG 5 cut(s) 96, 130, 243, 314, 417
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 3 cut(s) 43, 114, 381
Hpy188III TCNNGA 3 cut(s) 204, 517, 527
HpyAV CCTTC 2 cut(s) 364, 500
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 7 cut(s) 17, 188, 314, 325, 413, 417, 470
HpyF3I CTNAG 2 cut(s) 66, 441
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 5 cut(s) 96, 130, 243, 314, 417
Kzo9I GATC 4 cut(s) 200, 373, 403, 549
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 93, 159, 209, 217, 472, 499
Lsp1109I GCAGC 3 cut(s) 18, 172, 202
LweI GCATC 3 cut(s) 26, 312, 334
MaeII ACGT 1 cut(s) 285
MalI GATC 4 cut(s) 202, 375, 405, 551
MbiI CCGCTC 1 cut(s) 445
MboI GATC 4 cut(s) 200, 373, 403, 549
MboII GAAGA 3 cut(s) 93, 262, 368
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 3 cut(s) 200, 373, 549
MluCI AATT 4 cut(s) 44, 174, 302, 501
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 7 cut(s) 49, 120, 142, 200, 261, 423, 448
Mph1103I ATGCAT 3 cut(s) 327, 415, 472
MseI TTAA 2 cut(s) 75, 537
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 2 cut(s) 196, 487
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 487
NciI CCSGG 1 cut(s) 196
NdeII GATC 4 cut(s) 200, 373, 403, 549
NlaIII CATG 5 cut(s) 96, 130, 243, 314, 417
NsiI ATGCAT 3 cut(s) 327, 415, 472
NspI RCATGY 1 cut(s) 417
PaeI GCATGC 1 cut(s) 417
PaeR7I CTCGAG 1 cut(s) 204
PctI GAATGC 1 cut(s) 370
PkrI GCNGC 4 cut(s) 16, 33, 187, 217
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspPI GGNCC 2 cut(s) 381, 447
PsuI RGATCY 3 cut(s) 200, 373, 549
PvuII CAGCTG 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 2 cut(s) 75, 537
SatI GCNGC 4 cut(s) 15, 32, 186, 216
Sau3AI GATC 4 cut(s) 200, 373, 403, 549
Sau96I GGNCC 2 cut(s) 381, 447
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 196, 487
SetI ASST 8 cut(s) 16, 85, 134, 211, 217, 288, 511, 516
SfaNI GCATC 3 cut(s) 26, 312, 334
Sfr274I CTCGAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 381, 447
SlaI CTCGAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SphI GCATGC 1 cut(s) 417
Sse9I AATT 4 cut(s) 44, 174, 302, 501
SsiI CCGC 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 194, 485
StyI CCWWGG 1 cut(s) 450
TaiI ACGT 1 cut(s) 288
TaqI TCGA 2 cut(s) 62, 205
TasI AATT 4 cut(s) 44, 174, 302, 501
Tru1I TTAA 2 cut(s) 75, 537
Tru9I TTAA 2 cut(s) 75, 537
TseI GCWGC 4 cut(s) 14, 31, 185, 215
TspDTI ATGAA 3 cut(s) 81, 131, 510
VpaK11BI GGWCC 2 cut(s) 381, 447
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 417
XhoI CTCGAG 1 cut(s) 204
Zsp2I ATGCAT 3 cut(s) 327, 415, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.