Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004086

Physical Location & Seq

Genomic Coordinates Reverse (-)

32453234 .. 32455075

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTTGCATATCAGCTCATCCGTCATGTGGTTCACTAAAACCCACCCAGCTATCGTGGGCATCTTCTTTTCCGAAGCCTGTCATCTCCTTCAATTGCACCACAACCCCTCCTAATCTCATTCACACACCCAACAAGGTTTCCTTCGTTCGAGCTGCGTGGACCCGGAGATCTCGAGGTGAGGCTGCAAAGAGACCTAATAAGAAGTCATGGGGTCAACGGACAGATATTAAAGTAATATCAGTGGCAAGCACAAATGCCAAGGATTTGAGATTTTCATTGCCATCGCTTACTGATGACGATGCTTGTCGAGTTATAGGAAACCTGATTGCAGAGAGGTCCAAGGATGCTGATGTATTTGCGATGTCTTTTGAGCCCAAAAAGAATGAGAAGATTGAGGGTAGGCTGGGACTTGTTCTTGATACCATTAAAGAGAACGGTATAATCTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

151

Amino Acids

16.6

Weight (kDa)

9.73

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20230
fragaria_vesca	FvH4_5g32310 FvH4_7g08610
malus_domestica	MD07G1087000.v1.1 MD15G1410900.v1.1
prunus_persica	Prupe.1G551700_v2.0.a1 Prupe.2G113900_v2.0.a1
pyrus_communis	pycom07g06940 pycom15g36570
rosa_chinensis	RchiOBHm_Chr1g0343581 RchiOBHm_Chr7g0228601
rosa_laevigata	RLG00000001552 RLG00000028962
rosa_multiflora	Rmu_co8418143.1_g000001 Rmu_sc0000335.1_g000006 Rmu_sc0006972.1_g000001 Rmu_sc0024296.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231030 Rroxscaffold_4G00310460 Rroxscaffold_4G00310640
rosa_rugosa	Rorug01G0167600 Rorug07G0250700.1 Rorug07G0250800 Rorug07G0250900
rosa_samantha	Rh1AG183800 Rh1BG150900 Rh1CG170700 Rh1DG182700 Rh7BG383800 Rh7CG422300 Rh7DG398600
rosa_wichuraiana	Rw1G015210 Rw7G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	3 cut(s)	17, 52, 155
AluI	AGCT	3 cut(s)	17, 52, 155
Alw26I	GTCTC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	155, 185
AspS9I	GGNCC	2 cut(s)	162, 339
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	2 cut(s)	162, 339
BanII	GRGCYC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	142, 172
BccI	CCATC	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	2 cut(s)	156, 186
BlsI	GCNGC	2 cut(s)	157, 187
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	162, 339
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	162, 339
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	71, 292, 337
BpuMI	CCSGG	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	261, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	261, 342
BseGI	GGATG	2 cut(s)	19, 352
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	142, 172
BseYI	CCCAGC	2 cut(s)	48, 406
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	261, 342
BssMI	GATC	1 cut(s)	170
BssT1I	CCWWGG	2 cut(s)	261, 342
Bst4CI	ACNGT	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	19, 352
BstKTI	GATC	1 cut(s)	173
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	142, 172
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BtgZI	GCGATG	2 cut(s)	270, 377
BtsCI	GGATG	2 cut(s)	19, 352
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	162, 339
CviAII	CATG	2 cut(s)	27, 210
CviJI	RGCY	7 cut(s)	17, 52, 79, 155, 185, 376, 406
CviKI_1	RGCY	7 cut(s)	17, 52, 79, 155, 185, 376, 406
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	261, 342
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	162, 339
Eco88I	CYCGRG	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	261, 342
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	2 cut(s)	261, 342
FaeI	CATG	2 cut(s)	30, 213
FaiI	YATR	5 cut(s)	11, 28, 211, 317, 443
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	2 cut(s)	26, 209
Fnu4HI	GCNGC	2 cut(s)	156, 186
FokI	GGATG	2 cut(s)	6, 359
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	156, 186
GluI	GCNGC	2 cut(s)	156, 186
GsaI	CCCAGC	2 cut(s)	52, 410
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	2 cut(s)	30, 213
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	3 cut(s)	35, 162, 218
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	174, 419
Hpy8I	GTNNAC	3 cut(s)	35, 162, 218
HpyAV	CCTTC	2 cut(s)	100, 154
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	4 cut(s)	9, 99, 188, 332
Hsp92II	CATG	2 cut(s)	30, 213
Kzo9I	GATC	1 cut(s)	170
LpnPI	CCDG	5 cut(s)	62, 93, 179, 338, 392
Lsp1109I	GCAGC	2 cut(s)	142, 172
LweI	GCATC	3 cut(s)	71, 292, 337
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	2 cut(s)	57, 403
MfeI	CAATTG	1 cut(s)	94
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	5 cut(s)	120, 170, 175, 330, 391
MseI	TTAA	2 cut(s)	231, 429
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	94
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	30, 213
NlaIV	GGNNCC	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	157, 187
PspFI	CCCAGC	2 cut(s)	48, 406
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	162, 339
PsuI	RGATCY	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	231, 429
SatI	GCNGC	2 cut(s)	156, 186
Sau3AI	GATC	1 cut(s)	170
Sau96I	GGNCC	2 cut(s)	162, 339
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	8 cut(s)	19, 54, 141, 157, 181, 199, 327, 341
SfaNI	GCATC	3 cut(s)	71, 292, 337
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	2 cut(s)	162, 339
SlaI	CTCGAG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	2 cut(s)	261, 342
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	3 cut(s)	151, 175, 310
TasI	AATT	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	231, 429
Tru9I	TTAA	2 cut(s)	231, 429
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	2 cut(s)	155, 185
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	2 cut(s)	12, 235
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	2 cut(s)	162, 339
XhoI	CTCGAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.