Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004086

Physical Location & Seq

Genomic Coordinates Reverse (-)

36557535 .. 36559651

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGTGACAATAATATCCTGCTCAGCATCTCCTCCATTAAGTGTCTGTGGGTCGCTCAGCCTCTCCTCCTCCGAGTTACTTCCAACCCGGTCGACTCAGCAGCTTTCATGGGTTTCTTCCTTTCCTCCGATTAACATCTCCATTGCAGACCCGCCCACTCCCACACTGAGTAGGAATTCTGTTGTTCGAGCTGCATGGACCCGGAGATCTCGAGGTGAAGCTGCAAAGAAGCCTAACAGGAAATCCTGGAAACAGAAGACTGATATGTATATGAGGCCATTCTTACTAAATGTTTTCTTTTCGAAAAAGTTTATCCACGCAAAAGTGATGCATCGGGGAACAAGCAAAGTGATATCAGTTGCTACCACCAACGCCAAGGATCTTCGGAGCAACTTACCTTCACTCACAGATCACAACGCGTGCAGAGTTATAGGGAGGCTTATTGCTGAGCGATCGAAGGAAGCCGATGTATATGCTTTGTCTTATGAGGCCCGAAAAGGTGAACGGATTGAAGGTAAGCTTGGGATTGTTCTTGATACCATTAAAGAGAACGGGATCATGTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

190

Amino Acids

20.96

Weight (kDa)

10.25

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20230
fragaria_vesca	FvH4_5g32310 FvH4_7g08610
malus_domestica	MD07G1087000.v1.1 MD15G1410900.v1.1
prunus_persica	Prupe.1G551700_v2.0.a1 Prupe.2G113900_v2.0.a1
pyrus_communis	pycom07g06940 pycom15g36570
rosa_chinensis	RchiOBHm_Chr1g0343581 RchiOBHm_Chr7g0228601
rosa_laevigata	RLG00000001552 RLG00000028962
rosa_multiflora	Rmu_co8418143.1_g000001 Rmu_sc0000335.1_g000006 Rmu_sc0006972.1_g000001 Rmu_sc0024296.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231030 Rroxscaffold_4G00310460 Rroxscaffold_4G00310640
rosa_rugosa	Rorug01G0167600 Rorug07G0250700.1 Rorug07G0250800 Rorug07G0250900
rosa_samantha	Rh1AG183800 Rh1BG150900 Rh1CG170700 Rh1DG182700 Rh7BG383800 Rh7CG422300 Rh7DG398600
rosa_wichuraiana	Rw1G015210 Rw7G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	92
AccII	CGCG	1 cut(s)	419
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	387, 563
AcsI	RAATTY	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	4 cut(s)	103, 191, 221, 520
AluI	AGCT	4 cut(s)	103, 191, 221, 520
AlwI	GGATC	2 cut(s)	387, 563
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	2 cut(s)	275, 489
ApeKI	GCWGC	3 cut(s)	100, 191, 221
ApoI	RAATTY	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	198, 490
AsuC2I	CCSGG	2 cut(s)	88, 202
AsuHPI	GGTGA	3 cut(s)	16, 227, 512
AsuII	TTCGAA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	112, 178, 208
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	1 cut(s)	247
BcnI	CCSGG	2 cut(s)	88, 202
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	3 cut(s)	101, 192, 222
BlpI	GCTNAGC	3 cut(s)	22, 56, 447
BlsI	GCNGC	3 cut(s)	102, 193, 223
Bme1390I	CCNGG	3 cut(s)	88, 202, 247
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	198, 490
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	3 cut(s)	88, 202, 247
BmsI	GCATC	3 cut(s)	35, 318, 340
BpiI	GAAGAC	1 cut(s)	263
Bpu1102I	GCTNAGC	3 cut(s)	22, 56, 447
Bpu14I	TTCGAA	1 cut(s)	302
BpuMI	CCSGG	2 cut(s)	88, 202
BsaBI	GATNNNNATC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	375
BseJI	GATNNNNATC	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	5 cut(s)	36, 70, 110, 158, 438
BseRI	GAGGAG	3 cut(s)	21, 55, 58
BseXI	GCAGC	3 cut(s)	112, 178, 208
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	419
Bsh1285I	CGRYCG	2 cut(s)	92, 455
BshFI	GGCC	2 cut(s)	277, 491
BsiEI	CGRYCG	2 cut(s)	92, 455
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	88, 202
BsnI	GGCC	2 cut(s)	277, 491
BsoBI	CYCGRG	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	206, 379, 409, 452, 555
Bsp1720I	GCTNAGC	3 cut(s)	22, 56, 447
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	2 cut(s)	277, 491
BspCNI	CTCAG	5 cut(s)	35, 69, 109, 159, 439
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	387, 563
BspT104I	TTCGAA	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	5 cut(s)	206, 379, 409, 452, 555
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	5 cut(s)	22, 56, 96, 167, 447
BstFNI	CGCG	1 cut(s)	419
BstKTI	GATC	5 cut(s)	209, 382, 412, 455, 558
BstMBI	GATC	5 cut(s)	206, 379, 409, 452, 555
BstMCI	CGRYCG	2 cut(s)	92, 455
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	3 cut(s)	86, 200, 245
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	112, 178, 208
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	2 cut(s)	206, 379
BstYI	RGATCY	2 cut(s)	206, 379
BsuRI	GGCC	2 cut(s)	277, 491
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	198, 490
CviAII	CATG	3 cut(s)	108, 195, 559
DdeI	CTNAG	5 cut(s)	22, 56, 96, 167, 447
DpnI	GATC	5 cut(s)	208, 381, 411, 454, 557
DpnII	GATC	5 cut(s)	206, 379, 409, 452, 555
Eco130I	CCWWGG	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	245
EcoRV	GATATC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	111, 198, 562
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	3 cut(s)	107, 194, 558
FauI	CCCGC	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	3 cut(s)	101, 192, 222
Fsp4HI	GCNGC	3 cut(s)	101, 192, 222
GluI	GCNGC	3 cut(s)	101, 192, 222
HaeIII	GGCC	2 cut(s)	277, 491
HapII	CCGG	2 cut(s)	88, 202
Hin1II	CATG	3 cut(s)	111, 198, 562
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	2 cut(s)	88, 202
HphI	GGTGA	3 cut(s)	16, 227, 512
Hpy166II	GTNNAC	2 cut(s)	93, 503
Hpy188I	TCNGA	3 cut(s)	73, 129, 387
Hpy188III	TCNNGA	2 cut(s)	210, 533
Hpy8I	GTNNAC	2 cut(s)	93, 503
HpyAV	CCTTC	3 cut(s)	408, 451, 506
HpyCH4V	TGCA	5 cut(s)	146, 194, 224, 331, 423
HpyF3I	CTNAG	5 cut(s)	22, 56, 96, 167, 447
Hsp92II	CATG	3 cut(s)	111, 198, 562
Kzo9I	GATC	5 cut(s)	206, 379, 409, 452, 555
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	6 cut(s)	31, 101, 215, 223, 232, 259
Lsp1109I	GCAGC	3 cut(s)	112, 178, 208
LweI	GCATC	3 cut(s)	35, 318, 340
MaeIII	GTNAC	2 cut(s)	4, 75
MalI	GATC	5 cut(s)	208, 381, 411, 454, 557
MboI	GATC	5 cut(s)	206, 379, 409, 452, 555
MboII	GAAGA	3 cut(s)	108, 268, 374
MflI	RGATCY	2 cut(s)	206, 379
MluCI	AATT	1 cut(s)	175
MluI	ACGCGT	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	9 cut(s)	42, 71, 76, 79, 135, 206, 267, 429, 481
Mph1103I	ATGCAT	1 cut(s)	333
MseI	TTAA	4 cut(s)	38, 132, 543, 568
MspI	CCGG	2 cut(s)	88, 202
MspR9I	CCNGG	3 cut(s)	88, 202, 247
MvaI	CCWGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	419
NciI	CCSGG	2 cut(s)	88, 202
NdeII	GATC	5 cut(s)	206, 379, 409, 452, 555
NlaIII	CATG	3 cut(s)	111, 198, 562
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	333
NspV	TTCGAA	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	210
PfoI	TCCNGGA	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	102, 193, 223
Ple19I	CGATCG	1 cut(s)	455
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	198, 490
PsuI	RGATCY	2 cut(s)	206, 379
PvuI	CGATCG	1 cut(s)	455
SalI	GTCGAC	1 cut(s)	91
SaqAI	TTAA	4 cut(s)	38, 132, 543, 568
SatI	GCNGC	3 cut(s)	101, 192, 222
Sau3AI	GATC	5 cut(s)	206, 379, 409, 452, 555
Sau96I	GGNCC	2 cut(s)	198, 490
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	88, 202, 247
SetI	ASST	8 cut(s)	105, 193, 217, 223, 400, 502, 517, 522
SfaNI	GCATC	3 cut(s)	35, 318, 340
Sfr274I	CTCGAG	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	302
SinI	GGWCC	1 cut(s)	198
SlaI	CTCGAG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	152
StyD4I	CCNGG	3 cut(s)	86, 200, 245
StyI	CCWWGG	1 cut(s)	375
TaqI	TCGA	5 cut(s)	92, 187, 211, 302, 455
TasI	AATT	1 cut(s)	175
Tru1I	TTAA	4 cut(s)	38, 132, 543, 568
Tru9I	TTAA	4 cut(s)	38, 132, 543, 568
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	3 cut(s)	100, 191, 221
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.