FvH4_7g08610

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004086
Physical Location & Seq
Forward (+)
8465654 .. 8467985
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08610.t1

Sequence Viewer

Length: 534 bp
ATGGCATGCGTATCAGTACGTCCGTCATGTGGTTCACTAAAACCCATCCAGCTTTCGTGGGCATCTTCTCTCCCGAATCCCTCAATCTCCTTCAGTTGCACCACGACCCCTCCTAATCTCATTCGCACACCCAACAAGGTTTCCTTTGTTCGATCTGCATGGACACGAAGATCTCGAGGTGAGGCTGCAAAGAGACCTAGTAAGAAATCATGGGGTCAACGGACAGATATGTTTCTAAGGCCATTTTTACTGGATGTTTTCTTTTCAAAGCGATTTATCCATGCCAAAGTGATGCACCGGGGTACGAGCAAAGTAATATCTGCGGCAAGCACAAATGCCAATGATTTGAGATTTTCATTGCATTCGCTTACTGATGACAATGCTTGTCGAGTTATAGGAAACCTGATTGCAGAGAGGGCCAAGGATGCTGATGTATTTGCAATGTCTTTTGAGCCCAAAAAGAATGAGAAGATTGAGGGTAAGCTGGGACTTATCCTTGATACCATTAAAGAGAACGGTATCATATTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

10.25

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 80 - 176 1.3e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 2 cut(s) 18, 304
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 267
AluBI AGCT 2 cut(s) 52, 484
AluI AGCT 2 cut(s) 52, 484
Alw26I GTCTC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 2 cut(s) 239, 417
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 417
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 174
BanII GRGCYC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 198
BglII AGATCT 1 cut(s) 170
BisI GCNGC 2 cut(s) 186, 324
BlsI GCNGC 2 cut(s) 187, 325
Bme1390I CCNGG 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 3 cut(s) 71, 282, 415
BpuMI CCSGG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 298, 420
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 2 cut(s) 356, 447
BseDI CCNNGG 2 cut(s) 298, 420
BseGI GGATG 3 cut(s) 45, 259, 430
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 2 cut(s) 356, 447
BseNI ACTGG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 484
BshFI GGCC 2 cut(s) 241, 419
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 501
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 501
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 2 cut(s) 241, 419
Bso31I GGTCTC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 152, 170
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 241, 419
BspTNI GGTCTC 1 cut(s) 187
BsrDI GCAATG 2 cut(s) 356, 447
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 298, 420
BssMI GATC 2 cut(s) 152, 170
BssT1I CCWWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 7, 328
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 3 cut(s) 45, 259, 430
BstKTI GATC 2 cut(s) 155, 173
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 2 cut(s) 152, 170
BstMWI GCNNNNNNNGC 2 cut(s) 416, 425
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 2 cut(s) 241, 419
BtsCI GGATG 3 cut(s) 45, 259, 430
Cac8I GCNNGC 2 cut(s) 7, 328
Cfr13I GGNCC 1 cut(s) 417
Csp6I GTAC 2 cut(s) 17, 303
CviAII CATG 5 cut(s) 6, 27, 159, 210, 281
CviJI RGCY 6 cut(s) 52, 185, 241, 419, 454, 484
CviKI_1 RGCY 6 cut(s) 52, 185, 241, 419, 454, 484
CviQI GTAC 2 cut(s) 17, 303
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 154, 172
DpnII GATC 2 cut(s) 152, 170
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 5 cut(s) 9, 30, 162, 213, 284
FaiI YATR 8 cut(s) 7, 28, 160, 211, 230, 282, 395, 524
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 501
FatI CATG 5 cut(s) 5, 26, 158, 209, 280
Fnu4HI GCNGC 2 cut(s) 186, 324
FokI GGATG 3 cut(s) 32, 266, 437
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 2 cut(s) 186, 324
FspBI CTAG 1 cut(s) 198
GluI GCNGC 2 cut(s) 186, 324
GsaI CCCAGC 1 cut(s) 488
HaeIII GGCC 2 cut(s) 241, 419
HapII CCGG 1 cut(s) 298
Hin1II CATG 5 cut(s) 9, 30, 162, 213, 284
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 298
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 35, 218
Hpy188III TCNNGA 2 cut(s) 73, 174
Hpy8I GTNNAC 2 cut(s) 35, 218
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 7 cut(s) 99, 158, 188, 295, 361, 410, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 425
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 5 cut(s) 9, 30, 162, 213, 284
Kzo9I GATC 2 cut(s) 152, 170
LpnPI CCDG 5 cut(s) 62, 236, 311, 416, 470
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 3 cut(s) 71, 282, 415
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 19
MalI GATC 2 cut(s) 154, 172
MboI GATC 2 cut(s) 152, 170
MboII GAAGA 3 cut(s) 57, 180, 481
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 456
MnlI CCTC 6 cut(s) 91, 120, 170, 175, 408, 469
MseI TTAA 1 cut(s) 507
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 416, 425
NciI CCSGG 1 cut(s) 299
NdeII GATC 2 cut(s) 152, 170
NlaIII CATG 5 cut(s) 9, 30, 162, 213, 284
NspI RCATGY 1 cut(s) 9
PaeI GCATGC 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 2 cut(s) 187, 325
PspFI CCCAGC 1 cut(s) 484
PspPI GGNCC 1 cut(s) 417
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 18, 304
RsaNI GTAC 2 cut(s) 17, 303
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 2 cut(s) 186, 324
Sau3AI GATC 2 cut(s) 152, 170
Sau96I GGNCC 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 456
SetI ASST 7 cut(s) 22, 54, 141, 181, 199, 405, 486
SfaNI GCATC 3 cut(s) 71, 282, 415
Sfr274I CTCGAG 1 cut(s) 174
SlaI CTCGAG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
SphI GCATGC 1 cut(s) 9
SsiI CCGC 1 cut(s) 323
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 151, 175, 388
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 2 cut(s) 12, 235
XceI RCATGY 1 cut(s) 9
XhoI CTCGAG 1 cut(s) 174
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.