MD07G1087000.v1.1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0004086
Physical Location & Seq
Forward (+)
9084367 .. 9084759
393 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1087000.v1.1.491

Sequence Viewer

Length: 306 bp
ATGTACATGAGGCCATTTTTACTGGATGTTTTCTTTTCAAAACGATTCATCCATGCCAAAGTGATGCACAGGGGTACCAGCAAAGTGATATCCGTGGCCAGCACAAACTCCAAGGATTTGAGGTATTCGTTGCCGTCGCTTACCGATAACGAGGCATGTCGAGTTGTAGGAACCCTGATTGCAGAGAGGTGCAAGGATGCTGATGTGTTTGCAATGTCTTTTGAACCCAAAAAGAATGAGAGGATTGAGGGTAGGCTTGGAATCGTTCTCGATACCATTAAGGATAATGGCATCGTATTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

102

Amino Acids

11.46

Weight (kDa)

9.3

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 8 - 100 7.5e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 96
AfaI GTAC 2 cut(s) 5, 76
AgsI TTSAA 2 cut(s) 39, 224
AoxI GGCC 2 cut(s) 11, 96
Asp718I GGTACC 1 cut(s) 74
BaeI ACNNNNGTAYC 2 cut(s) 58, 91
BalI TGGCCA 1 cut(s) 98
BanI GGYRCC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 76, 172
BmsI GCATC 3 cut(s) 54, 187, 300
BsaJI CCNNGG 2 cut(s) 93, 111
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 93, 111
BseGI GGATG 3 cut(s) 31, 48, 202
BseMI GCAATG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 27
BshFI GGCC 2 cut(s) 13, 98
BshNI GGYRCC 1 cut(s) 74
BsnI GGCC 2 cut(s) 13, 98
Bsp1407I TGTACA 1 cut(s) 3
BspANI GGCC 2 cut(s) 13, 98
BspLI GGNNCC 2 cut(s) 76, 172
BspT107I GGYRCC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 93, 111
BssT1I CCWWGG 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 3 cut(s) 31, 48, 202
BstNSI RCATGY 1 cut(s) 159
BsuRI GGCC 2 cut(s) 13, 98
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 3 cut(s) 31, 48, 202
Cac8I GCNNGC 1 cut(s) 100
Csp6I GTAC 2 cut(s) 4, 75
CviAII CATG 3 cut(s) 7, 53, 156
CviJI RGCY 3 cut(s) 13, 98, 256
CviKI_1 RGCY 3 cut(s) 13, 98, 256
CviQI GTAC 2 cut(s) 4, 75
EaeI YGGCCR 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 111
Eco32I GATATC 1 cut(s) 90
EcoRV GATATC 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 3 cut(s) 10, 56, 159
FaiI YATR 3 cut(s) 8, 54, 157
FatI CATG 3 cut(s) 6, 52, 155
FokI GGATG 3 cut(s) 35, 38, 209
HaeIII GGCC 2 cut(s) 13, 98
Hin1II CATG 3 cut(s) 10, 56, 159
HinfI GANTC 2 cut(s) 45, 261
Hpy188III TCNNGA 1 cut(s) 269
Hpy99I CGWCG 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 67, 182, 192, 212
Hsp92II CATG 3 cut(s) 10, 56, 159
KpnI GGTACC 1 cut(s) 78
LpnPI CCDG 5 cut(s) 8, 55, 91, 112, 188
LweI GCATC 3 cut(s) 54, 187, 300
MlsI TGGCCA 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 98
MnlI CCTC 6 cut(s) 3, 114, 145, 180, 234, 241
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
MseI TTAA 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 98
NlaIII CATG 3 cut(s) 10, 56, 159
NlaIV GGNNCC 2 cut(s) 76, 172
NspI RCATGY 1 cut(s) 159
PfeI GAWTC 2 cut(s) 45, 261
PspN4I GGNNCC 2 cut(s) 76, 172
RsaI GTAC 2 cut(s) 5, 76
RsaNI GTAC 2 cut(s) 4, 75
SaqAI TTAA 1 cut(s) 279
SetI ASST 2 cut(s) 125, 191
SfaNI GCATC 3 cut(s) 54, 187, 300
StyI CCWWGG 1 cut(s) 111
TaqI TCGA 2 cut(s) 160, 270
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 45, 261
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 82
XceI RCATGY 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.