Rh7BG383800

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004086
Physical Location & Seq
Reverse (-)
41550684 .. 41552348
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG383800.1

Sequence Viewer

Length: 567 bp
ATGATGTCTTGTTCAGCTGCATCAAGTGGGTCGCTGCTCTCCTCCGAATTGCTCCCAACTCGTTCGACTCAGCGAGTCAAACCAGTTTCGCTTTCATGGGTTTCTTCGTTTCCTCTGATGAACATTTCCATGACCTCCACGACACTCCCTGCCACTCCCACAGCCAACAAGATGTCAATTGTATGTGCTGCATATACCCGGAGATCTCGAGGTGAAGCTGCTAAAAGACCAAACAGGAAGTCATGGAAACAGAAGACAGATATGTATATGAGGCCATTCTTACTAAACGTTTTCTTTTCCAAAAAATTTATCCATGCAAAAGTGATGCATCGGGGAACAAGCAAAGTGATTTCAGTCGCAACAACGAATGCGAAGGATCTTCGGACCAACTTACCATCACTCACAGATCATAATGCATGCAGAGTTATCGGGAGGCTTATCGCTGAGCGGTCCAAGGAGGCAGATGTATATGCATTGTCTTACGAACCCAGGAAAGATGAACGAATTGAAGGTAAGCTCGGGATTGTTCTTGATACCATTAAAGAAAATGGAATCTTATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

188

Amino Acids

20.96

Weight (kDa)

10.23

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 86 - 187 8.7e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 448
AciI CCGC 1 cut(s) 448
AclI AACGTT 1 cut(s) 288
AclWI GGATC 1 cut(s) 384
AcsI RAATTY 1 cut(s) 305
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 3 cut(s) 17, 218, 517
AluI AGCT 3 cut(s) 17, 218, 517
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 2 cut(s) 207, 518
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 17, 34, 188, 218
ApoI RAATTY 1 cut(s) 305
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspS9I GGNCC 2 cut(s) 384, 450
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 2 cut(s) 207, 518
AvaII GGWCC 2 cut(s) 384, 450
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 4, 21, 175, 205
BccI CCATC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 490
BcnI CCSGG 1 cut(s) 199
BglII AGATCT 1 cut(s) 203
BisI GCNGC 4 cut(s) 18, 35, 189, 219
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 4 cut(s) 19, 36, 190, 220
Bme1390I CCNGG 2 cut(s) 199, 490
Bme18I GGWCC 2 cut(s) 384, 450
BmeT110I CYCGRG 2 cut(s) 207, 518
BmgT120I GGNCC 2 cut(s) 384, 450
BmrFI CCNGG 2 cut(s) 199, 490
BmsI GCATC 3 cut(s) 29, 315, 337
BpiI GAAGAC 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 453, 488
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 453, 488
BseMII CTCAG 2 cut(s) 83, 435
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 4 cut(s) 4, 21, 175, 205
BshFI GGCC 1 cut(s) 274
BsiHKCI CYCGRG 2 cut(s) 207, 518
BsiSI CCGG 1 cut(s) 199
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 274
BsoBI CYCGRG 2 cut(s) 207, 518
Bsp143I GATC 3 cut(s) 203, 376, 406
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 1 cut(s) 448
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 82, 436
BspPI GGATC 1 cut(s) 384
BsrBI CCGCTC 1 cut(s) 448
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 453, 488
BssMI GATC 3 cut(s) 203, 376, 406
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 69, 444
BstKTI GATC 3 cut(s) 206, 379, 409
BstMBI GATC 3 cut(s) 203, 376, 406
BstNI CCWGG 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 197, 488
BstV1I GCAGC 4 cut(s) 4, 21, 175, 205
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 203, 376
BstYI RGATCY 2 cut(s) 203, 376
BsuRI GGCC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 384, 450
CviAII CATG 5 cut(s) 96, 130, 243, 314, 417
CviJI RGCY 6 cut(s) 17, 164, 218, 274, 436, 517
CviKI_1 RGCY 6 cut(s) 17, 164, 218, 274, 436, 517
DdeI CTNAG 2 cut(s) 69, 444
DpnI GATC 3 cut(s) 205, 378, 408
DpnII GATC 3 cut(s) 203, 376, 406
Eco130I CCWWGG 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 384, 450
Eco88I CYCGRG 2 cut(s) 207, 518
EcoRII CCWGG 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 453
EcoT22I ATGCAT 3 cut(s) 330, 418, 475
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 5 cut(s) 99, 133, 246, 317, 420
FatI CATG 5 cut(s) 95, 129, 242, 313, 416
Fnu4HI GCNGC 4 cut(s) 18, 35, 189, 219
Fsp4HI GCNGC 4 cut(s) 18, 35, 189, 219
GluI GCNGC 4 cut(s) 18, 35, 189, 219
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 199
Hin1II CATG 5 cut(s) 99, 133, 246, 317, 420
HinfI GANTC 3 cut(s) 67, 75, 552
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 3 cut(s) 46, 117, 384
Hpy188III TCNNGA 4 cut(s) 207, 430, 520, 530
HpyAV CCTTC 2 cut(s) 367, 503
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 7 cut(s) 20, 191, 317, 328, 416, 420, 473
HpyF3I CTNAG 2 cut(s) 69, 444
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 5 cut(s) 99, 133, 246, 317, 420
Kzo9I GATC 3 cut(s) 203, 376, 406
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 6 cut(s) 96, 162, 212, 220, 475, 502
Lsp1109I GCAGC 4 cut(s) 4, 21, 175, 205
LweI GCATC 3 cut(s) 29, 315, 337
MaeII ACGT 1 cut(s) 288
MalI GATC 3 cut(s) 205, 378, 408
MbiI CCGCTC 1 cut(s) 448
MboI GATC 3 cut(s) 203, 376, 406
MboII GAAGA 3 cut(s) 96, 265, 371
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 2 cut(s) 203, 376
MluCI AATT 4 cut(s) 47, 177, 305, 504
MlyI GAGTC 2 cut(s) 61, 84
MnlI CCTC 7 cut(s) 52, 123, 145, 203, 264, 426, 451
Mph1103I ATGCAT 3 cut(s) 330, 418, 475
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 2 cut(s) 199, 490
MunI CAATTG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 490
NciI CCSGG 1 cut(s) 199
NdeII GATC 3 cut(s) 203, 376, 406
NlaIII CATG 5 cut(s) 99, 133, 246, 317, 420
NsiI ATGCAT 3 cut(s) 330, 418, 475
NspI RCATGY 1 cut(s) 420
PaeI GCATGC 1 cut(s) 420
PaeR7I CTCGAG 1 cut(s) 207
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 552
PkrI GCNGC 4 cut(s) 19, 36, 190, 220
PleI GAGTC 2 cut(s) 61, 83
PpsI GAGTC 2 cut(s) 61, 83
Psp1406I AACGTT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspPI GGNCC 2 cut(s) 384, 450
PsuI RGATCY 2 cut(s) 203, 376
PvuII CAGCTG 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 4 cut(s) 18, 35, 189, 219
Sau3AI GATC 3 cut(s) 203, 376, 406
Sau96I GGNCC 2 cut(s) 384, 450
SchI GAGTC 2 cut(s) 61, 84
ScrFI CCNGG 2 cut(s) 199, 490
SetI ASST 7 cut(s) 19, 137, 214, 220, 291, 514, 519
SfaNI GCATC 3 cut(s) 29, 315, 337
Sfr274I CTCGAG 1 cut(s) 207
SinI GGWCC 2 cut(s) 384, 450
SlaI CTCGAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
SphI GCATGC 1 cut(s) 420
Sse9I AATT 4 cut(s) 47, 177, 305, 504
SsiI CCGC 1 cut(s) 448
StyD4I CCNGG 2 cut(s) 197, 488
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 65, 208
TasI AATT 4 cut(s) 47, 177, 305, 504
TfiI GAWTC 1 cut(s) 552
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseI GCWGC 4 cut(s) 17, 34, 188, 218
TspDTI ATGAA 3 cut(s) 84, 134, 513
VpaK11BI GGWCC 2 cut(s) 384, 450
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 420
XhoI CTCGAG 1 cut(s) 207
Zsp2I ATGCAT 3 cut(s) 330, 418, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.