Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004086

Physical Location & Seq

Genomic Coordinates Forward (+)

17195780 .. 17197861

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCTGCATATCAGCTCCTCCTCTTTTGTCAAATCCATGTGGTTCAGTGAAACCCGCTCGGCTCTCATGGGCTTCTTCTTTTCCCAAGCTTGGCATCTCCTTCAATTGCATCACAGCCCCTCCTAGTTCCCTTCACACGCACAACAAGGATTCCTTCATTCGAGCTGCATGGACCCGGAGATCTCGAGGTGAGGCTGCAAAAAGACCTAATAGGAAATCATGGTCGCAAAGGACAGATATGTACATGAGGCCATTTTTACTGGATGTTTTCTTTTCAAAACGATTTATCCATGCCAAAGTGATGCACCGGGGTACCAGCAAAGTGATATCCGTGGCTAGCACAAATTCCAAGGATTTGAGGTATTCGTTGACGTCACTTGTCGACAACGATGCGTGTCGAGTGATAGGAAACCTGATCGCAGAGAGGTGCAAGGATGCTGATGTTTTTGCAATGTCTTTTGAGCCCAAAAAGAATGAGAGGATTGAGGGTAGGCTTGGAATTGTACTTGATACCATTAAGGAGAACGGAATCATGTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

182

Amino Acids

20.31

Weight (kDa)

10.08

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20230
fragaria_vesca	FvH4_5g32310 FvH4_7g08610
malus_domestica	MD07G1087000.v1.1 MD15G1410900.v1.1
prunus_persica	Prupe.1G551700_v2.0.a1 Prupe.2G113900_v2.0.a1
pyrus_communis	pycom07g06940 pycom15g36570
rosa_chinensis	RchiOBHm_Chr1g0343581 RchiOBHm_Chr7g0228601
rosa_laevigata	RLG00000001552 RLG00000028962
rosa_multiflora	Rmu_co8418143.1_g000001 Rmu_sc0000335.1_g000006 Rmu_sc0006972.1_g000001 Rmu_sc0024296.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231030 Rroxscaffold_4G00310460 Rroxscaffold_4G00310640
rosa_rugosa	Rorug01G0167600 Rorug07G0250700.1 Rorug07G0250800 Rorug07G0250900
rosa_samantha	Rh1AG183800 Rh1BG150900 Rh1CG170700 Rh1DG182700 Rh7BG383800 Rh7CG422300 Rh7DG398600
rosa_wichuraiana	Rw1G015210 Rw7G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	3 cut(s)	245, 316, 507
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	106, 279
AluBI	AGCT	3 cut(s)	17, 91, 167
AluI	AGCT	3 cut(s)	17, 91, 167
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	2 cut(s)	3, 251
ApeKI	GCWGC	2 cut(s)	167, 197
ApoI	RAATTY	1 cut(s)	346
Asp718I	GGTACC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	178, 311
AsuHPI	GGTGA	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	174
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	154, 184
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BcnI	CCSGG	2 cut(s)	178, 311
BfaI	CTAG	2 cut(s)	126, 339
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	2 cut(s)	168, 198
BlsI	GCNGC	2 cut(s)	169, 199
Bme1390I	CCNGG	2 cut(s)	178, 311
Bme18I	GGWCC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	176, 316
BmrFI	CCNGG	2 cut(s)	178, 311
BmsI	GCATC	5 cut(s)	105, 120, 294, 382, 427
BmtI	GCTAGC	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	178, 311
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	310, 333, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	310, 333, 351
BseGI	GGATG	2 cut(s)	271, 442
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	2 cut(s)	9, 12
BseXI	GCAGC	2 cut(s)	154, 184
BshFI	GGCC	2 cut(s)	5, 253
BshNI	GGYRCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	178, 310
BslI	CCNNNNNNNGG	1 cut(s)	92
BsnI	GGCC	2 cut(s)	5, 253
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	182, 417
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	5, 253
BspLI	GGNNCC	2 cut(s)	176, 316
BspOI	GCTAGC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	310, 333, 351
BssMI	GATC	2 cut(s)	182, 417
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	7, 340
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	271, 442
BstKTI	GATC	2 cut(s)	185, 420
BstMBI	GATC	2 cut(s)	182, 417
BstSCI	CCNGG	2 cut(s)	176, 309
BstV1I	GCAGC	2 cut(s)	154, 184
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	5, 253
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	271, 442
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	7, 340
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	3 cut(s)	244, 315, 506
CviAII	CATG	7 cut(s)	39, 69, 171, 222, 247, 293, 535
CviQI	GTAC	3 cut(s)	244, 315, 506
DpnI	GATC	2 cut(s)	184, 419
DpnII	GATC	2 cut(s)	182, 417
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	7 cut(s)	42, 72, 174, 225, 250, 296, 538
FaiI	YATR	9 cut(s)	11, 40, 70, 172, 223, 242, 248, 294, 536
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	7 cut(s)	38, 68, 170, 221, 246, 292, 534
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	168, 198
FokI	GGATG	2 cut(s)	278, 449
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	168, 198
FspBI	CTAG	2 cut(s)	126, 339
GluI	GCNGC	2 cut(s)	168, 198
HaeIII	GGCC	2 cut(s)	5, 253
HapII	CCGG	2 cut(s)	178, 310
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	7 cut(s)	42, 72, 174, 225, 250, 296, 538
HincII	GTYRAC	2 cut(s)	372, 385
HindII	GTYRAC	2 cut(s)	372, 385
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	152, 531
HpaII	CCGG	2 cut(s)	178, 310
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	372, 385
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	2 cut(s)	372, 385
HpyAV	CCTTC	3 cut(s)	112, 143, 166
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	7 cut(s)	9, 111, 170, 200, 307, 432, 452
HpySE526I	ACGT	1 cut(s)	374
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	7 cut(s)	42, 72, 174, 225, 250, 296, 538
KpnI	GGTACC	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	182, 417
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	6 cut(s)	19, 191, 248, 323, 331, 428
Lsp1109I	GCAGC	2 cut(s)	154, 184
LweI	GCATC	5 cut(s)	105, 120, 294, 382, 427
MaeI	CTAG	2 cut(s)	126, 339
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	2 cut(s)	184, 419
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	182, 417
MboII	GAAGA	1 cut(s)	69
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	3 cut(s)	106, 346, 501
MseI	TTAA	1 cut(s)	519
MspI	CCGG	2 cut(s)	178, 310
MspR9I	CCNGG	2 cut(s)	178, 311
MunI	CAATTG	1 cut(s)	106
NciI	CCSGG	2 cut(s)	178, 311
NdeII	GATC	2 cut(s)	182, 417
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	7 cut(s)	42, 72, 174, 225, 250, 296, 538
NlaIV	GGNNCC	2 cut(s)	176, 316
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	152, 531
PkrI	GCNGC	2 cut(s)	169, 199
PspN4I	GGNNCC	2 cut(s)	176, 316
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	3 cut(s)	245, 316, 507
RsaNI	GTAC	3 cut(s)	244, 315, 506
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	2 cut(s)	168, 198
Sau3AI	GATC	2 cut(s)	182, 417
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	178, 311
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	9 cut(s)	19, 93, 169, 193, 211, 365, 377, 417, 431
SfaNI	GCATC	5 cut(s)	105, 120, 294, 382, 427
Sfr274I	CTCGAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	106, 346, 501
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	2 cut(s)	126, 339
StyD4I	CCNGG	2 cut(s)	176, 309
StyI	CCWWGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	4 cut(s)	163, 187, 384, 400
TasI	AATT	3 cut(s)	106, 346, 501
TatI	WGTACW	2 cut(s)	243, 505
TfiI	GAWTC	2 cut(s)	152, 531
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	2 cut(s)	167, 197
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	1 cut(s)	148
TspGWI	ACGGA	2 cut(s)	322, 543
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	126, 339
ZraI	GACGTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.