Rroxscaffold_3G00231030

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004086
Physical Location & Seq
Forward (+)
15980148 .. 15982053
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231030.1

Sequence Viewer

Length: 567 bp
ATGATGTCTTGTTCAGCTGCATCAAGTGGGTCGCTGCTCTCCTCCGAATTGCTCCCAACTCGTTCGACTCAGCGAGTCAAACCAGCTTCGCTTTCATGGGTTTCTTCGTTTCCTCTGATGAACATTTCCATGACCTCCACAACACTCCCTGCCACTCCCACACCCAACAAGATGTCAATTGTATGTGCTGCATATACCCGGAGATCTCGAGGTGAAGCTGCTAAAAGACCAAACAGGAAATCATGGAAACAGAAGACAGATATGTATATGAGGCCATTCTTACTAAACGTTTTCTTTTCCAAAAAATTTATCCATGCAAAAGTGATGCATCGGGGAACAAGCAAAGTGATATCAGTCGCAACAACGAATGCGAAGGATCTTCGGACCAACTTACCATCACTCACAGATCATAATGCATGCAGAGTTATCGGGAGGCTTATCGCTGAGCGATCCAAGGAGGCAGATGTATATGCCTTGTCTTACGAACCCAGGAAAGATGAACGAATTGAAGGTAAGCTCGGGATTGTTCTTGATACCATTAAAGAAAATGGGATCTTATTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

188

Amino Acids

20.96

Weight (kDa)

10.23

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 86 - 187 8.7e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 288
AclWI GGATC 3 cut(s) 384, 444, 560
AcsI RAATTY 1 cut(s) 305
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 4 cut(s) 17, 86, 218, 517
AluI AGCT 4 cut(s) 17, 86, 218, 517
AlwI GGATC 3 cut(s) 384, 444, 560
Ama87I CYCGRG 2 cut(s) 207, 518
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 17, 34, 188, 218
ApoI RAATTY 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 384
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 2 cut(s) 207, 518
AvaII GGWCC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 4, 21, 175, 205
BccI CCATC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 490
BcnI CCSGG 1 cut(s) 199
BglII AGATCT 1 cut(s) 203
BisI GCNGC 4 cut(s) 18, 35, 189, 219
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 4 cut(s) 19, 36, 190, 220
Bme1390I CCNGG 2 cut(s) 199, 490
Bme18I GGWCC 1 cut(s) 384
BmeT110I CYCGRG 2 cut(s) 207, 518
BmgT120I GGNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 199, 490
BmsI GCATC 3 cut(s) 29, 315, 337
BpiI GAAGAC 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 453, 488
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 453, 488
BseMII CTCAG 2 cut(s) 83, 435
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 4 cut(s) 4, 21, 175, 205
BshFI GGCC 1 cut(s) 274
BsiHKCI CYCGRG 2 cut(s) 207, 518
BsiSI CCGG 1 cut(s) 199
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 274
BsoBI CYCGRG 2 cut(s) 207, 518
Bsp143I GATC 5 cut(s) 203, 376, 406, 449, 552
Bsp1720I GCTNAGC 1 cut(s) 444
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 82, 436
BspPI GGATC 3 cut(s) 384, 444, 560
BssECI CCNNGG 2 cut(s) 453, 488
BssMI GATC 5 cut(s) 203, 376, 406, 449, 552
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 69, 444
BstKTI GATC 5 cut(s) 206, 379, 409, 452, 555
BstMBI GATC 5 cut(s) 203, 376, 406, 449, 552
BstNI CCWGG 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 197, 488
BstV1I GCAGC 4 cut(s) 4, 21, 175, 205
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 3 cut(s) 203, 376, 552
BstYI RGATCY 3 cut(s) 203, 376, 552
BsuRI GGCC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 384
CviAII CATG 5 cut(s) 96, 130, 243, 314, 417
CviJI RGCY 6 cut(s) 17, 86, 218, 274, 436, 517
CviKI_1 RGCY 6 cut(s) 17, 86, 218, 274, 436, 517
DdeI CTNAG 2 cut(s) 69, 444
DpnI GATC 5 cut(s) 205, 378, 408, 451, 554
DpnII GATC 5 cut(s) 203, 376, 406, 449, 552
Eco130I CCWWGG 1 cut(s) 453
Eco32I GATATC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 207, 518
EcoRII CCWGG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 453
EcoT22I ATGCAT 2 cut(s) 330, 418
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 5 cut(s) 99, 133, 246, 317, 420
FatI CATG 5 cut(s) 95, 129, 242, 313, 416
Fnu4HI GCNGC 4 cut(s) 18, 35, 189, 219
Fsp4HI GCNGC 4 cut(s) 18, 35, 189, 219
GluI GCNGC 4 cut(s) 18, 35, 189, 219
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 199
Hin1II CATG 5 cut(s) 99, 133, 246, 317, 420
HinfI GANTC 2 cut(s) 67, 75
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 3 cut(s) 46, 117, 384
Hpy188III TCNNGA 4 cut(s) 207, 430, 520, 530
HpyAV CCTTC 2 cut(s) 367, 503
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 6 cut(s) 20, 191, 317, 328, 416, 420
HpyF3I CTNAG 2 cut(s) 69, 444
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 5 cut(s) 99, 133, 246, 317, 420
Kzo9I GATC 5 cut(s) 203, 376, 406, 449, 552
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 6 cut(s) 96, 162, 212, 220, 475, 502
Lsp1109I GCAGC 4 cut(s) 4, 21, 175, 205
LweI GCATC 3 cut(s) 29, 315, 337
MaeII ACGT 1 cut(s) 288
MalI GATC 5 cut(s) 205, 378, 408, 451, 554
MboI GATC 5 cut(s) 203, 376, 406, 449, 552
MboII GAAGA 3 cut(s) 96, 265, 371
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 3 cut(s) 203, 376, 552
MluCI AATT 4 cut(s) 47, 177, 305, 504
MlyI GAGTC 2 cut(s) 61, 84
MnlI CCTC 7 cut(s) 52, 123, 145, 203, 264, 426, 451
Mph1103I ATGCAT 2 cut(s) 330, 418
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 2 cut(s) 199, 490
MunI CAATTG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 490
NciI CCSGG 1 cut(s) 199
NdeII GATC 5 cut(s) 203, 376, 406, 449, 552
NlaIII CATG 5 cut(s) 99, 133, 246, 317, 420
NsiI ATGCAT 2 cut(s) 330, 418
NspI RCATGY 1 cut(s) 420
PaeI GCATGC 1 cut(s) 420
PaeR7I CTCGAG 1 cut(s) 207
PctI GAATGC 1 cut(s) 373
PkrI GCNGC 4 cut(s) 19, 36, 190, 220
PleI GAGTC 2 cut(s) 61, 83
PpsI GAGTC 2 cut(s) 61, 83
Psp1406I AACGTT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspPI GGNCC 1 cut(s) 384
PsuI RGATCY 3 cut(s) 203, 376, 552
PvuII CAGCTG 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 4 cut(s) 18, 35, 189, 219
Sau3AI GATC 5 cut(s) 203, 376, 406, 449, 552
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 2 cut(s) 61, 84
ScrFI CCNGG 2 cut(s) 199, 490
SetI ASST 8 cut(s) 19, 88, 137, 214, 220, 291, 514, 519
SfaNI GCATC 3 cut(s) 29, 315, 337
Sfr274I CTCGAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 384
SlaI CTCGAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
SphI GCATGC 1 cut(s) 420
Sse9I AATT 4 cut(s) 47, 177, 305, 504
StyD4I CCNGG 2 cut(s) 197, 488
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 65, 208
TasI AATT 4 cut(s) 47, 177, 305, 504
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseI GCWGC 4 cut(s) 17, 34, 188, 218
TspDTI ATGAA 3 cut(s) 84, 134, 513
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 420
XhoI CTCGAG 1 cut(s) 207
Zsp2I ATGCAT 2 cut(s) 330, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.