Rh7CG422300

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004086
Physical Location & Seq
Reverse (-)
54584398 .. 54586137
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG422300.1

Sequence Viewer

Length: 567 bp
ATGATGTCTTGTTCAGCTGCATCAAGTGGGTCGCTGCTCTCCTCCGAATTGCTCCCAACTCGTTCGACTCAGCGAGTTAAACCAGCTTCGCTTTCATGGGTTTCTTCGTTTCCTCTGATGAACATTTCCATGACCTCCATAACACTCCCTGCCACTCCCACACCCAACAAGATGTCAATTGTATGTGCTGCATATACCCGGAGATCTCGAGGTGAAGCTGCTAAAAGACCAAACAGGAAGTCGTGGAAACAGAAGACAGATATGTATATGAGGCCATTCTTACTAAATGTTTTTTTTTCCAAAAAATTTATCCATGCAAAAGTGATGCATCGGGGAACAAGCAAAGTGATATCAGTCGCAACAACGAATGCGAAGGATCTTCGGACCAACTTACCATCACTTACAGATCATAATGCGTGCAGAGTTATCGGGAGGCTTATCGCTGAGCGATCCAAGGAGGCAGATGTATATGCATTGTCTTATGAACCCAGGAAAGATGAACGAATTGAAGGTAAGCTCGGGATTGTTCTTGATACCATTAAAGAAAATGGGATTTTATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

188

Amino Acids

20.97

Weight (kDa)

10.23

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 86 - 187 8.7e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 384, 444
AcsI RAATTY 1 cut(s) 305
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 4 cut(s) 17, 86, 218, 517
AluI AGCT 4 cut(s) 17, 86, 218, 517
AlwI GGATC 2 cut(s) 384, 444
Ama87I CYCGRG 2 cut(s) 207, 518
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 17, 34, 188, 218
ApoI RAATTY 1 cut(s) 305
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspS9I GGNCC 1 cut(s) 384
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 2 cut(s) 207, 518
AvaII GGWCC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 4, 21, 175, 205
BccI CCATC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 490
BcnI CCSGG 1 cut(s) 199
BglII AGATCT 1 cut(s) 203
BisI GCNGC 4 cut(s) 18, 35, 189, 219
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 4 cut(s) 19, 36, 190, 220
Bme1390I CCNGG 2 cut(s) 199, 490
Bme18I GGWCC 1 cut(s) 384
BmeT110I CYCGRG 2 cut(s) 207, 518
BmgT120I GGNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 199, 490
BmsI GCATC 3 cut(s) 29, 315, 337
BpiI GAAGAC 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 453, 488
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 453, 488
BseMII CTCAG 2 cut(s) 83, 435
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 4 cut(s) 4, 21, 175, 205
BsgI GTGCAG 1 cut(s) 439
BshFI GGCC 1 cut(s) 274
BsiHKCI CYCGRG 2 cut(s) 207, 518
BsiSI CCGG 1 cut(s) 199
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 274
BsoBI CYCGRG 2 cut(s) 207, 518
Bsp143I GATC 4 cut(s) 203, 376, 406, 449
Bsp1720I GCTNAGC 1 cut(s) 444
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 82, 436
BspPI GGATC 2 cut(s) 384, 444
BssECI CCNNGG 2 cut(s) 453, 488
BssMI GATC 4 cut(s) 203, 376, 406, 449
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 69, 444
BstKTI GATC 4 cut(s) 206, 379, 409, 452
BstMBI GATC 4 cut(s) 203, 376, 406, 449
BstNI CCWGG 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 197, 488
BstV1I GCAGC 4 cut(s) 4, 21, 175, 205
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 203, 376
BstYI RGATCY 2 cut(s) 203, 376
BsuRI GGCC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 384
CviAII CATG 3 cut(s) 96, 130, 314
CviJI RGCY 6 cut(s) 17, 86, 218, 274, 436, 517
CviKI_1 RGCY 6 cut(s) 17, 86, 218, 274, 436, 517
DdeI CTNAG 2 cut(s) 69, 444
DpnI GATC 4 cut(s) 205, 378, 408, 451
DpnII GATC 4 cut(s) 203, 376, 406, 449
Eco130I CCWWGG 1 cut(s) 453
Eco32I GATATC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 207, 518
EcoRII CCWGG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 453
EcoT22I ATGCAT 2 cut(s) 330, 475
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 3 cut(s) 99, 133, 317
FatI CATG 3 cut(s) 95, 129, 313
Fnu4HI GCNGC 4 cut(s) 18, 35, 189, 219
Fsp4HI GCNGC 4 cut(s) 18, 35, 189, 219
GluI GCNGC 4 cut(s) 18, 35, 189, 219
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 199
Hin1II CATG 3 cut(s) 99, 133, 317
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 3 cut(s) 46, 117, 384
Hpy188III TCNNGA 4 cut(s) 207, 430, 520, 530
HpyAV CCTTC 2 cut(s) 367, 503
HpyCH4V TGCA 6 cut(s) 20, 191, 317, 328, 420, 473
HpyF3I CTNAG 2 cut(s) 69, 444
Hsp92II CATG 3 cut(s) 99, 133, 317
Kzo9I GATC 4 cut(s) 203, 376, 406, 449
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 6 cut(s) 96, 162, 212, 220, 475, 502
Lsp1109I GCAGC 4 cut(s) 4, 21, 175, 205
LweI GCATC 3 cut(s) 29, 315, 337
MalI GATC 4 cut(s) 205, 378, 408, 451
MboI GATC 4 cut(s) 203, 376, 406, 449
MboII GAAGA 3 cut(s) 96, 265, 371
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 2 cut(s) 203, 376
MluCI AATT 4 cut(s) 47, 177, 305, 504
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 7 cut(s) 52, 123, 145, 203, 264, 426, 451
Mph1103I ATGCAT 2 cut(s) 330, 475
MseI TTAA 2 cut(s) 78, 540
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 2 cut(s) 199, 490
MunI CAATTG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 490
NciI CCSGG 1 cut(s) 199
NdeII GATC 4 cut(s) 203, 376, 406, 449
NlaIII CATG 3 cut(s) 99, 133, 317
NsiI ATGCAT 2 cut(s) 330, 475
PaeR7I CTCGAG 1 cut(s) 207
PctI GAATGC 1 cut(s) 373
PkrI GCNGC 4 cut(s) 19, 36, 190, 220
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspPI GGNCC 1 cut(s) 384
PsuI RGATCY 2 cut(s) 203, 376
PvuII CAGCTG 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 78, 540
SatI GCNGC 4 cut(s) 18, 35, 189, 219
Sau3AI GATC 4 cut(s) 203, 376, 406, 449
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 199, 490
SetI ASST 7 cut(s) 19, 88, 137, 214, 220, 514, 519
SfaNI GCATC 3 cut(s) 29, 315, 337
Sfr274I CTCGAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 384
SlaI CTCGAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 4 cut(s) 47, 177, 305, 504
StyD4I CCNGG 2 cut(s) 197, 488
StyI CCWWGG 1 cut(s) 453
TaqI TCGA 2 cut(s) 65, 208
TasI AATT 4 cut(s) 47, 177, 305, 504
Tru1I TTAA 2 cut(s) 78, 540
Tru9I TTAA 2 cut(s) 78, 540
TseI GCWGC 4 cut(s) 17, 34, 188, 218
TspDTI ATGAA 4 cut(s) 84, 134, 498, 513
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 207
Zsp2I ATGCAT 2 cut(s) 330, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.