Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006972.1

Orthogroup ID

OG0004086

Physical Location & Seq

Genomic Coordinates Forward (+)

5935 .. 8641

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006972.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgcccggaaggcatgttattgagaggatgagagtgtcggataaggccatgagctgcccaggaagctataggaggccaggctacaggaaagggacccgagttgagagttcgggttatggtgatgaaccgccaaggaggcttgggtatggaagtcctggtgattatgggggaagggaggagactgcatcaagtgggtcgctgctctcctccgaattgctcccaactcgttcgactcagcgagttaaaccagcttcgctttcatgggtttcttcgtttcctctgatgaacatttccatgacctccacgacactccctgccactcccacacccaacaagatgtcaattgtatgtgctgcatatacccggagatctcgaggtgaagctgctaaaagaccaaacaggaagtcatggaaacagaagacagatatgtatatgaggccatttttactaaacgttttcttttccaaaaaatttatccatgcaaaagtgatgcatcggggaacaagcaaagtgatatcagtcgcaacaacgaatgcgaaggatcttcggaccaacttaccatcactcacagatcataatgcatgcagagttatcgggaggcttatcgctgagcgatccaaggaggcagatgtatatgcattgtcttacgaacccaggaaagatgaacgaattgaaggtaaactcgggattgttcttgataccattaaagaaaatgggatcttatttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

243

Amino Acids

27.13

Weight (kDa)

10.19

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20230
fragaria_vesca	FvH4_5g32310 FvH4_7g08610
malus_domestica	MD07G1087000.v1.1 MD15G1410900.v1.1
prunus_persica	Prupe.1G551700_v2.0.a1 Prupe.2G113900_v2.0.a1
pyrus_communis	pycom07g06940 pycom15g36570
rosa_chinensis	RchiOBHm_Chr1g0343581 RchiOBHm_Chr7g0228601
rosa_laevigata	RLG00000001552 RLG00000028962
rosa_multiflora	Rmu_co8418143.1_g000001 Rmu_sc0000335.1_g000006 Rmu_sc0006972.1_g000001 Rmu_sc0024296.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231030 Rroxscaffold_4G00310460 Rroxscaffold_4G00310640
rosa_rugosa	Rorug01G0167600 Rorug07G0250700.1 Rorug07G0250800 Rorug07G0250900
rosa_samantha	Rh1AG183800 Rh1BG150900 Rh1CG170700 Rh1DG182700 Rh7BG383800 Rh7CG422300 Rh7DG398600
rosa_wichuraiana	Rw1G015210 Rw7G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	128
AclI	AACGTT	1 cut(s)	453
AclWI	GGATC	3 cut(s)	549, 609, 725
AcsI	RAATTY	1 cut(s)	470
AgsI	TTSAA	1 cut(s)	674
AjnI	CCWGG	4 cut(s)	58, 76, 154, 653
AluBI	AGCT	4 cut(s)	54, 66, 251, 383
AluI	AGCT	4 cut(s)	54, 66, 251, 383
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	3 cut(s)	549, 609, 725
Ama87I	CYCGRG	3 cut(s)	96, 372, 683
AoxI	GGCC	3 cut(s)	45, 74, 437
ApeKI	GCWGC	4 cut(s)	54, 199, 353, 383
ApoI	RAATTY	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspS9I	GGNCC	2 cut(s)	93, 549
AsuC2I	CCSGG	2 cut(s)	6, 364
AsuHPI	GGTGA	3 cut(s)	131, 170, 389
AvaI	CYCGRG	3 cut(s)	96, 372, 683
AvaII	GGWCC	2 cut(s)	93, 549
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	41, 186, 340, 370
BccI	CCATC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BciT130I	CCWGG	4 cut(s)	60, 78, 156, 655
BcnI	CCSGG	2 cut(s)	6, 364
BcoDI	GTCTC	1 cut(s)	173
BfmI	CTRYAG	2 cut(s)	67, 82
BglI	GCCNNNNNGGC	2 cut(s)	10, 136
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	4 cut(s)	55, 200, 354, 384
BlpI	GCTNAGC	1 cut(s)	609
BlsI	GCNGC	4 cut(s)	56, 201, 355, 385
Bme1390I	CCNGG	6 cut(s)	6, 60, 78, 156, 364, 655
Bme18I	GGWCC	2 cut(s)	93, 549
BmeT110I	CYCGRG	3 cut(s)	96, 372, 683
BmgT120I	GGNCC	2 cut(s)	93, 549
BmiI	GGNNCC	2 cut(s)	94, 95
BmrFI	CCNGG	6 cut(s)	6, 60, 78, 156, 364, 655
BmsI	GCATC	3 cut(s)	194, 480, 502
BpiI	GAAGAC	1 cut(s)	425
Bpu1102I	GCTNAGC	1 cut(s)	609
BpuMI	CCSGG	2 cut(s)	6, 364
BsaJI	CCNNGG	4 cut(s)	58, 131, 618, 653
BseBI	CCWGG	4 cut(s)	60, 78, 156, 655
BseDI	CCNNGG	4 cut(s)	58, 131, 618, 653
BseGI	GGATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	248, 600
BseRI	GAGGAG	2 cut(s)	191, 196
BseXI	GCAGC	4 cut(s)	41, 186, 340, 370
BshFI	GGCC	3 cut(s)	47, 76, 439
BsiHKCI	CYCGRG	3 cut(s)	96, 372, 683
BsiSI	CCGG	2 cut(s)	6, 364
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	47, 76, 439
BsoBI	CYCGRG	3 cut(s)	96, 372, 683
Bsp143I	GATC	5 cut(s)	368, 541, 571, 614, 717
Bsp1720I	GCTNAGC	1 cut(s)	609
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	3 cut(s)	47, 76, 439
BspCNI	CTCAG	2 cut(s)	247, 601
BspLI	GGNNCC	2 cut(s)	94, 95
BspPI	GGATC	3 cut(s)	549, 609, 725
BssECI	CCNNGG	4 cut(s)	58, 131, 618, 653
BssMI	GATC	5 cut(s)	368, 541, 571, 614, 717
BssT1I	CCWWGG	2 cut(s)	131, 618
Bst2UI	CCWGG	4 cut(s)	60, 78, 156, 655
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	234, 609
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	5 cut(s)	371, 544, 574, 617, 720
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	5 cut(s)	368, 541, 571, 614, 717
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 63, 136
BstNI	CCWGG	4 cut(s)	60, 78, 156, 655
BstNSI	RCATGY	2 cut(s)	17, 585
BstSCI	CCNGG	6 cut(s)	4, 58, 76, 154, 362, 653
BstSFI	CTRYAG	2 cut(s)	67, 82
BstV1I	GCAGC	4 cut(s)	41, 186, 340, 370
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	3 cut(s)	368, 541, 717
BstYI	RGATCY	3 cut(s)	368, 541, 717
BsuRI	GGCC	3 cut(s)	47, 76, 439
BtsCI	GGATG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	93, 549
CviAII	CATG	7 cut(s)	14, 49, 261, 295, 408, 479, 582
DdeI	CTNAG	2 cut(s)	234, 609
DpnI	GATC	5 cut(s)	370, 543, 573, 616, 719
DpnII	GATC	5 cut(s)	368, 541, 571, 614, 717
Eco130I	CCWWGG	2 cut(s)	131, 618
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	93, 549
Eco88I	CYCGRG	3 cut(s)	96, 372, 683
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	4 cut(s)	58, 76, 154, 653
EcoRV	GATATC	1 cut(s)	516
EcoT14I	CCWWGG	2 cut(s)	131, 618
EcoT22I	ATGCAT	3 cut(s)	495, 583, 640
ErhI	CCWWGG	2 cut(s)	131, 618
FaeI	CATG	7 cut(s)	17, 52, 264, 298, 411, 482, 585
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	7 cut(s)	13, 48, 260, 294, 407, 478, 581
Fnu4HI	GCNGC	4 cut(s)	55, 200, 354, 384
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	4 cut(s)	55, 200, 354, 384
GluI	GCNGC	4 cut(s)	55, 200, 354, 384
HaeIII	GGCC	3 cut(s)	47, 76, 439
HapII	CCGG	2 cut(s)	6, 364
Hin1II	CATG	7 cut(s)	17, 52, 264, 298, 411, 482, 585
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	2 cut(s)	6, 364
HphI	GGTGA	3 cut(s)	131, 170, 389
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	4 cut(s)	40, 211, 282, 549
Hpy188III	TCNNGA	4 cut(s)	372, 595, 685, 695
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	4 cut(s)	3, 165, 532, 668
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	7 cut(s)	185, 356, 482, 493, 581, 585, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 63, 136
HpyF3I	CTNAG	2 cut(s)	234, 609
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	7 cut(s)	17, 52, 264, 298, 411, 482, 585
KflI	GGGWCCC	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	368, 541, 571, 614, 717
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	4 cut(s)	41, 186, 340, 370
LweI	GCATC	3 cut(s)	194, 480, 502
MaeII	ACGT	1 cut(s)	453
MalI	GATC	5 cut(s)	370, 543, 573, 616, 719
MboI	GATC	5 cut(s)	368, 541, 571, 614, 717
MboII	GAAGA	3 cut(s)	261, 430, 536
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	3 cut(s)	368, 541, 717
MluCI	AATT	4 cut(s)	212, 342, 470, 669
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	18
Mph1103I	ATGCAT	3 cut(s)	495, 583, 640
MseI	TTAA	2 cut(s)	243, 705
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	2 cut(s)	6, 364
MspR9I	CCNGG	6 cut(s)	6, 60, 78, 156, 364, 655
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	4 cut(s)	60, 78, 156, 655
MwoI	GCNNNNNNNGC	3 cut(s)	10, 63, 136
NciI	CCSGG	2 cut(s)	6, 364
NdeII	GATC	5 cut(s)	368, 541, 571, 614, 717
NlaIII	CATG	7 cut(s)	17, 52, 264, 298, 411, 482, 585
NlaIV	GGNNCC	2 cut(s)	94, 95
NsiI	ATGCAT	3 cut(s)	495, 583, 640
NspI	RCATGY	2 cut(s)	17, 585
PaeI	GCATGC	1 cut(s)	585
PaeR7I	CTCGAG	1 cut(s)	372
PctI	GAATGC	1 cut(s)	538
PkrI	GCNGC	4 cut(s)	56, 201, 355, 385
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	4 cut(s)	58, 76, 154, 653
PspGI	CCWGG	4 cut(s)	58, 76, 154, 653
PspN4I	GGNNCC	2 cut(s)	94, 95
PspPI	GGNCC	2 cut(s)	93, 549
PspPPI	RGGWCCY	1 cut(s)	93
PsuI	RGATCY	3 cut(s)	368, 541, 717
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	243, 705
SatI	GCNGC	4 cut(s)	55, 200, 354, 384
Sau3AI	GATC	5 cut(s)	368, 541, 571, 614, 717
Sau96I	GGNCC	2 cut(s)	93, 549
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	6 cut(s)	6, 60, 78, 156, 364, 655
SetI	ASST	8 cut(s)	56, 68, 253, 302, 379, 385, 456, 679
SfaNI	GCATC	3 cut(s)	194, 480, 502
SfcI	CTRYAG	2 cut(s)	67, 82
Sfr274I	CTCGAG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	93, 549
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SphI	GCATGC	1 cut(s)	585
Sse9I	AATT	4 cut(s)	212, 342, 470, 669
SsiI	CCGC	1 cut(s)	128
StyD4I	CCNGG	6 cut(s)	4, 58, 76, 154, 362, 653
StyI	CCWWGG	2 cut(s)	131, 618
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	230, 373
TasI	AATT	4 cut(s)	212, 342, 470, 669
Tru1I	TTAA	2 cut(s)	243, 705
Tru9I	TTAA	2 cut(s)	243, 705
TseI	GCWGC	4 cut(s)	54, 199, 353, 383
TspDTI	ATGAA	4 cut(s)	138, 249, 299, 678
VpaK11BI	GGWCC	2 cut(s)	93, 549
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	2 cut(s)	17, 585
XhoI	CTCGAG	1 cut(s)	372
Zsp2I	ATGCAT	3 cut(s)	495, 583, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.