MD15G1410900.v1.1

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004086
Physical Location & Seq
Reverse (-)
51039971 .. 51041657
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1410900.v1.1.491

Sequence Viewer

Length: 567 bp
ATGGTGACAATAATATCTTGTTCAGCGGCTCCTCCATCAAGCGTGTGTGGGTCGCTCAGCCTCTCCTCCTCCGGGTTGCTTCCAACTCGGTCGACTCAGCTTTCATGGGTTTCTTCCTTTCCTCTGATTAACATCTCCATAGCAGACCCTCCCGCTCCCGCACTGAGCAGGAATTCTGTTGTTCGAGCTGCATGGACCCGGAGATCTCGAGGTGAAGCTGCAAAGAAGCCTAACAGGAAATCCTGGAAACAGAAGACTGATATGTATATGAGGCCATTCTTACTAAATGTTTTCTTTTCGAAAAAATTTATCCACGCAAAAGTAATGCATCGGGGAACCAGCAAAGTGATATCAGTTGCTACCACCAATGCCAAGGATCTTCGGAGCAACTTACCTTCACTCACAGATCACAACGCGTGCAGAGTTATAGGGCGGCTTATTGCTGAGCGGTCCAAGGAAGCTGATGTATATGCATTGTCTTATGAGGCCCGAAAAGGTGAACGGATTGAAGGTAAGCTTGGGATTGTTCTTGATACCATTAAAGAGAACGGGATCATGTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

189

Amino Acids

20.68

Weight (kDa)

10.36

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 89 - 187 6.7e-10 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 155, 448
AccI GTMKAC 1 cut(s) 92
AccII CGCG 1 cut(s) 416
AciI CCGC 5 cut(s) 26, 153, 159, 433, 448
AclWI GGATC 2 cut(s) 384, 560
AcsI RAATTY 2 cut(s) 172, 305
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AluBI AGCT 5 cut(s) 100, 188, 218, 461, 517
AluI AGCT 5 cut(s) 100, 188, 218, 461, 517
AlwI GGATC 2 cut(s) 384, 560
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 2 cut(s) 272, 486
ApeKI GCWGC 2 cut(s) 188, 218
ApoI RAATTY 2 cut(s) 172, 305
AspS9I GGNCC 3 cut(s) 195, 450, 487
AsuC2I CCSGG 2 cut(s) 73, 199
AsuHPI GGTGA 3 cut(s) 16, 224, 509
AsuII TTCGAA 1 cut(s) 299
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 2 cut(s) 195, 450
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 175, 205
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 244
BcnI CCSGG 2 cut(s) 73, 199
BglII AGATCT 1 cut(s) 203
BisI GCNGC 4 cut(s) 27, 189, 219, 434
BlpI GCTNAGC 2 cut(s) 56, 444
BlsI GCNGC 4 cut(s) 28, 190, 220, 435
Bme1390I CCNGG 3 cut(s) 73, 199, 244
Bme18I GGWCC 2 cut(s) 195, 450
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 3 cut(s) 195, 450, 487
BmiI GGNNCC 3 cut(s) 30, 197, 337
BmrFI CCNGG 3 cut(s) 73, 199, 244
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 260
Bpu1102I GCTNAGC 2 cut(s) 56, 444
Bpu14I TTCGAA 1 cut(s) 299
BpuMI CCSGG 2 cut(s) 73, 199
BsaBI GATNNNNATC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 372, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 372, 453
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 4 cut(s) 70, 110, 155, 435
BseRI GAGGAG 3 cut(s) 21, 55, 58
BseXI GCAGC 2 cut(s) 175, 205
BsgI GTGCAG 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 274, 488
BsiEI CGRYCG 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 2 cut(s) 72, 199
BslI CCNNNNNNNGG 1 cut(s) 72
BsnI GGCC 2 cut(s) 274, 488
BsoBI CYCGRG 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 299
Bsp143I GATC 4 cut(s) 203, 376, 406, 552
Bsp1720I GCTNAGC 2 cut(s) 56, 444
BspACI CCGC 5 cut(s) 26, 153, 159, 433, 448
BspANI GGCC 2 cut(s) 274, 488
BspCNI CTCAG 4 cut(s) 69, 109, 156, 436
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 3 cut(s) 30, 197, 337
BspPI GGATC 2 cut(s) 384, 560
BspT104I TTCGAA 1 cut(s) 299
BsrBI CCGCTC 2 cut(s) 155, 448
BssECI CCNNGG 2 cut(s) 372, 453
BssMI GATC 4 cut(s) 203, 376, 406, 552
BssT1I CCWWGG 2 cut(s) 372, 453
Bst2UI CCWGG 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 4 cut(s) 56, 96, 164, 444
BstFNI CGCG 1 cut(s) 416
BstKTI GATC 4 cut(s) 206, 379, 409, 555
BstMBI GATC 4 cut(s) 203, 376, 406, 552
BstMCI CGRYCG 1 cut(s) 92
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 3 cut(s) 71, 197, 242
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 2 cut(s) 175, 205
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 203, 376
BstYI RGATCY 2 cut(s) 203, 376
BsuRI GGCC 2 cut(s) 274, 488
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 418
Cfr13I GGNCC 3 cut(s) 195, 450, 487
CviAII CATG 3 cut(s) 105, 192, 556
DdeI CTNAG 4 cut(s) 56, 96, 164, 444
DpnI GATC 4 cut(s) 205, 378, 408, 554
DpnII GATC 4 cut(s) 203, 376, 406, 552
Eco130I CCWWGG 2 cut(s) 372, 453
Eco32I GATATC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 195, 450
Eco88I CYCGRG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 242
EcoRV GATATC 1 cut(s) 351
EcoT14I CCWWGG 2 cut(s) 372, 453
EcoT22I ATGCAT 2 cut(s) 330, 475
ErhI CCWWGG 2 cut(s) 372, 453
FaeI CATG 3 cut(s) 108, 195, 559
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 3 cut(s) 104, 191, 555
FauI CCCGC 2 cut(s) 160, 166
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 4 cut(s) 27, 189, 219, 434
Fsp4HI GCNGC 4 cut(s) 27, 189, 219, 434
GluI GCNGC 4 cut(s) 27, 189, 219, 434
HaeIII GGCC 2 cut(s) 274, 488
HapII CCGG 2 cut(s) 72, 199
Hin1II CATG 3 cut(s) 108, 195, 559
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 72, 199
HphI GGTGA 3 cut(s) 16, 224, 509
Hpy166II GTNNAC 2 cut(s) 93, 500
Hpy188I TCNGA 2 cut(s) 126, 384
Hpy188III TCNNGA 2 cut(s) 207, 530
Hpy8I GTNNAC 2 cut(s) 93, 500
HpyAV CCTTC 2 cut(s) 405, 503
HpyCH4V TGCA 5 cut(s) 191, 221, 328, 420, 473
HpyF3I CTNAG 4 cut(s) 56, 96, 164, 444
Hsp92II CATG 3 cut(s) 108, 195, 559
Kzo9I GATC 4 cut(s) 203, 376, 406, 552
LmnI GCTCC 3 cut(s) 34, 160, 384
LpnPI CCDG 7 cut(s) 85, 154, 212, 220, 229, 256, 352
Lsp1109I GCAGC 2 cut(s) 175, 205
LweI GCATC 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 4
MalI GATC 4 cut(s) 205, 378, 408, 554
MbiI CCGCTC 2 cut(s) 155, 448
MboI GATC 4 cut(s) 203, 376, 406, 552
MboII GAAGA 3 cut(s) 105, 265, 371
MflI RGATCY 2 cut(s) 203, 376
MluCI AATT 2 cut(s) 172, 305
MluI ACGCGT 1 cut(s) 414
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 9 cut(s) 42, 71, 76, 79, 132, 159, 203, 264, 478
Mph1103I ATGCAT 2 cut(s) 330, 475
MseI TTAA 2 cut(s) 129, 540
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 2 cut(s) 72, 199
MspR9I CCNGG 3 cut(s) 73, 199, 244
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 1 cut(s) 416
NciI CCSGG 2 cut(s) 73, 199
NdeII GATC 4 cut(s) 203, 376, 406, 552
NlaIII CATG 3 cut(s) 108, 195, 559
NlaIV GGNNCC 3 cut(s) 30, 197, 337
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 2 cut(s) 330, 475
NspV TTCGAA 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 207
PfoI TCCNGGA 1 cut(s) 242
PkrI GCNGC 4 cut(s) 28, 190, 220, 435
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 3 cut(s) 30, 197, 337
PspPI GGNCC 3 cut(s) 195, 450, 487
PsuI RGATCY 2 cut(s) 203, 376
SalI GTCGAC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 129, 540
SatI GCNGC 4 cut(s) 27, 189, 219, 434
Sau3AI GATC 4 cut(s) 203, 376, 406, 552
Sau96I GGNCC 3 cut(s) 195, 450, 487
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 3 cut(s) 73, 199, 244
SetI ASST 9 cut(s) 102, 190, 214, 220, 397, 463, 499, 514, 519
SfaNI GCATC 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 299
SinI GGWCC 2 cut(s) 195, 450
SlaI CTCGAG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 2 cut(s) 172, 305
SsiI CCGC 5 cut(s) 26, 153, 159, 433, 448
StyD4I CCNGG 3 cut(s) 71, 197, 242
StyI CCWWGG 2 cut(s) 372, 453
TaqI TCGA 4 cut(s) 92, 184, 208, 299
TaqII GACCGA 1 cut(s) 78
TasI AATT 2 cut(s) 172, 305
TauI GCSGC 2 cut(s) 29, 436
Tru1I TTAA 2 cut(s) 129, 540
Tru9I TTAA 2 cut(s) 129, 540
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 188, 218
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 2 cut(s) 195, 450
XapI RAATTY 2 cut(s) 172, 305
XhoI CTCGAG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 92
Zsp2I ATGCAT 2 cut(s) 330, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.