Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004086

Physical Location & Seq

Genomic Coordinates Forward (+)

45110049 .. 45111732

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G551700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTGTCAACGATATCTTCTTCTTCAGCTCCATCAAGTTGTTCGCTTCTCTCCTCCGAGTTCTTTCCAACTCGGTCGACTCAGCCATTCAAAGCCGCTTCGCTTTCATGGGTTTCTTCTTTTCCTCCGGTAAACATATCCATAAGCTCCATTGCAGACCCTCCCACTCCCACTCTCAACAAGAATTCTGTTGTTCGAGCTGCATGGACGCGGAGATCTCGAGGAGAAGCTGCAAAGAAGCCTAACAGGAAATCGTGGAAACAGAAGACTGATATGTATATGAGGCCTTTCTTACTGAATGTTTTCTTTTCAAAAAAGTTTATCCACGCAAAAGTGATGCATCGGGGAACAAGCAAAGTGATATCAGTCGCTACCACGAATGCCAAGGATGTTCGGAGCAACTTACCCTCACTCACAGATCACAACGCTTGCAGAGTTATAGGGAGGCTTATTGCTGAGCGATCAAAGGAAGCTGATGTTTATGCATTGTCTTATGAGCCCAGGAAAGATGAACGGATTGAAGGTAAGCTTGGGATTGTTCTTGATACCATTAAAGAAAACGGGATCATATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

193

Amino Acids

21.33

Weight (kDa)

10.22

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20230
fragaria_vesca	FvH4_5g32310 FvH4_7g08610
malus_domestica	MD07G1087000.v1.1 MD15G1410900.v1.1
prunus_persica	Prupe.1G551700_v2.0.a1 Prupe.2G113900_v2.0.a1
pyrus_communis	pycom07g06940 pycom15g36570
rosa_chinensis	RchiOBHm_Chr1g0343581 RchiOBHm_Chr7g0228601
rosa_laevigata	RLG00000001552 RLG00000028962
rosa_multiflora	Rmu_co8418143.1_g000001 Rmu_sc0000335.1_g000006 Rmu_sc0006972.1_g000001 Rmu_sc0024296.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231030 Rroxscaffold_4G00310460 Rroxscaffold_4G00310640
rosa_rugosa	Rorug01G0167600 Rorug07G0250700.1 Rorug07G0250800 Rorug07G0250900
rosa_samantha	Rh1AG183800 Rh1BG150900 Rh1CG170700 Rh1DG182700 Rh7BG383800 Rh7CG422300 Rh7DG398600
rosa_wichuraiana	Rw1G015210 Rw7G033480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	96, 211
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	91, 312, 521
AjnI	CCWGG	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	6 cut(s)	29, 147, 200, 230, 473, 529
AluI	AGCT	6 cut(s)	29, 147, 200, 230, 473, 529
AlwI	GGATC	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	200, 230
ApoI	RAATTY	1 cut(s)	184
Asp700I	GAANNNNTTC	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	187, 217
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	502
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	3 cut(s)	96, 201, 231
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	3 cut(s)	97, 202, 232
Bme1390I	CCNGG	1 cut(s)	502
BmeT110I	CYCGRG	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	2 cut(s)	327, 349
BpiI	GAAGAC	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	384, 500
BsaWI	WCCGGW	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	384, 500
BseGI	GGATG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	95, 447
BseRI	GAGGAG	2 cut(s)	43, 237
BseXI	GCAGC	2 cut(s)	187, 217
Bsh1236I	CGCG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	286
BsiEI	CGRYCG	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	215, 418, 461, 564
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	2 cut(s)	96, 211
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	2 cut(s)	94, 448
BspFNI	CGCG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	384, 500
BssMI	GATC	4 cut(s)	215, 418, 461, 564
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	81, 456
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	218, 421, 464, 567
BstMBI	GATC	4 cut(s)	215, 418, 461, 564
BstMCI	CGRYCG	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	187, 217
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	430
CseI	GACGC	1 cut(s)	217
CviAII	CATG	2 cut(s)	108, 204
DdeI	CTNAG	2 cut(s)	81, 456
DpnI	GATC	4 cut(s)	217, 420, 463, 566
DpnII	GATC	4 cut(s)	215, 418, 461, 564
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	501
Eco32I	GATATC	2 cut(s)	15, 363
Eco57I	CTGAAG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	500
EcoRV	GATATC	2 cut(s)	15, 363
EcoT14I	CCWWGG	1 cut(s)	384
EcoT22I	ATGCAT	2 cut(s)	342, 487
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	111, 207
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FatI	CATG	2 cut(s)	107, 203
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	96, 201, 231
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	3 cut(s)	96, 201, 231
GluI	GCNGC	3 cut(s)	96, 201, 231
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	111, 207
HincII	GTYRAC	2 cut(s)	9, 78
HindII	GTYRAC	2 cut(s)	9, 78
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	9, 78, 133
Hpy188I	TCNGA	2 cut(s)	58, 396
Hpy188III	TCNNGA	2 cut(s)	219, 542
Hpy8I	GTNNAC	3 cut(s)	9, 78, 133
HpyAV	CCTTC	1 cut(s)	515
HpyCH4V	TGCA	6 cut(s)	155, 203, 233, 340, 432, 485
HpyF3I	CTNAG	2 cut(s)	81, 456
Hsp92II	CATG	2 cut(s)	111, 207
Kzo9I	GATC	4 cut(s)	215, 418, 461, 564
LmnI	GCTCC	3 cut(s)	34, 152, 396
LpnPI	CCDG	4 cut(s)	141, 232, 487, 514
Lsp1109I	GCAGC	2 cut(s)	187, 217
LweI	GCATC	2 cut(s)	327, 349
MalI	GATC	4 cut(s)	217, 420, 463, 566
MboI	GATC	4 cut(s)	215, 418, 461, 564
MboII	GAAGA	5 cut(s)	9, 12, 15, 108, 277
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	64, 135, 171, 215, 276, 418, 438
Mph1103I	ATGCAT	2 cut(s)	342, 487
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	1 cut(s)	552
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	502
MvnI	CGCG	1 cut(s)	211
NdeII	GATC	4 cut(s)	215, 418, 461, 564
NlaIII	CATG	2 cut(s)	111, 207
NsiI	ATGCAT	2 cut(s)	342, 487
PaeR7I	CTCGAG	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	286
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	97, 202, 232
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	3 cut(s)	96, 201, 231
Sau3AI	GATC	4 cut(s)	215, 418, 461, 564
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	7 cut(s)	31, 149, 202, 232, 475, 526, 531
SfaNI	GCATC	2 cut(s)	327, 349
Sfr274I	CTCGAG	1 cut(s)	219
SlaI	CTCGAG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	1 cut(s)	184
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	2 cut(s)	96, 211
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	384
TaqI	TCGA	3 cut(s)	77, 196, 220
TaqII	GACCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	184
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TseI	GCWGC	2 cut(s)	200, 230
TspDTI	ATGAA	2 cut(s)	96, 525
TspGWI	ACGGA	1 cut(s)	529
XapI	RAATTY	1 cut(s)	184
XhoI	CTCGAG	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	302
Zsp2I	ATGCAT	2 cut(s)	342, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.