Rw1G015210

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004086
Physical Location & Seq
Forward (+)
33964422 .. 33966214
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015210.1

Sequence Viewer

Length: 588 bp
ATGGTAATACTGTGGAAACCTTTATCTCTGCTGCAGAGCAAGTTTAAAGCAGAGAGAGATGGTTGCATAGCTCCTCCCTCATGTGGTTCGCTAAGACCCACTCAGCTTTCGTGGGCATCTTCTTTTCCGAAGCCTGCCATCTCCTTCAATTGCACCACAACCTCTCCCAATCTCATTCACTCACCCAACAAGGTTTCCTTCGTTCGAGCTGCATGGACCCGGAGATCTCGAGGCGAGGCTGCAAAAAGACCTAATAAGAAATCATGGGGTCAACGGACAGATATGTTCCTAAGGCCATTTTTACTGGATGTTTTCTTTTCAAAACGATTTATCCATGCCAAAGTGATGCACCGTGGTACCAGCAAAGTAATATCTGTGGCAAGCACAAATGCCAAGGATTTGAGATTTACATTGCCGTCGCTTACCGATGACAATGCTTGTCGAGTTATAGGAAACCTGATTGCAGAGAGGTCCAAGGATGCTGATGTATTTGCGATGTCTTTTGAGCCCAAAAAGAATGAGAAGATTGAGGGTAGGCTAGGACTTGTTCTTGATACCATTAAAGAGAACGGTATCATTTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

195

Amino Acids

21.87

Weight (kDa)

10.26

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 98 - 194 6e-09 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 2 cut(s) 148, 321
AluBI AGCT 3 cut(s) 71, 106, 209
AluI AGCT 3 cut(s) 71, 106, 209
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 3 cut(s) 31, 209, 239
Asp718I GGTACC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 216, 471
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 174
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 2 cut(s) 216, 471
AxyI CCTNAGG 1 cut(s) 290
BaeI ACNNNNGTAYC 2 cut(s) 340, 373
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 18, 196, 226
BccI CCATC 2 cut(s) 53, 146
BceAI ACGGC 1 cut(s) 400
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BcnI CCSGG 1 cut(s) 220
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 32
BglII AGATCT 1 cut(s) 224
BisI GCNGC 3 cut(s) 32, 210, 240
BlsI GCNGC 3 cut(s) 33, 211, 241
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 2 cut(s) 216, 471
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 216, 471
BmiI GGNNCC 2 cut(s) 218, 358
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 3 cut(s) 125, 336, 469
BpuMI CCSGG 1 cut(s) 220
BsaJI CCNNGG 3 cut(s) 352, 393, 474
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 309
Bse21I CCTNAGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 410
BseDI CCNNGG 3 cut(s) 352, 393, 474
BseGI GGATG 2 cut(s) 313, 484
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 18, 196, 226
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 83
BsnI GGCC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 1 cut(s) 224
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 218, 358
BspMAI CTGCAG 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 410
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 3 cut(s) 352, 393, 474
BssMI GATC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 393, 474
Bst4CI ACNGT 3 cut(s) 12, 353, 572
BstC8I GCNNGC 2 cut(s) 135, 382
BstDEI CTNAG 3 cut(s) 92, 102, 290
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 313, 484
BstKTI GATC 1 cut(s) 227
BstMBI GATC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 18, 196, 226
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu36I CCTNAGG 1 cut(s) 290
BsuRI GGCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 352
BtgZI GCGATG 1 cut(s) 509
BtsCI GGATG 2 cut(s) 313, 484
Cac8I GCNNGC 2 cut(s) 135, 382
Cfr13I GGNCC 2 cut(s) 216, 471
Csp6I GTAC 1 cut(s) 357
CviAII CATG 4 cut(s) 81, 213, 264, 335
CviJI RGCY 8 cut(s) 71, 106, 133, 209, 239, 295, 508, 538
CviKI_1 RGCY 8 cut(s) 71, 106, 133, 209, 239, 295, 508, 538
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 3 cut(s) 92, 102, 290
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
DraI TTTAAA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 393, 474
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 216, 471
Eco81I CCTNAGG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 228
EcoT14I CCWWGG 2 cut(s) 393, 474
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 2 cut(s) 393, 474
FaeI CATG 4 cut(s) 84, 216, 267, 338
FaiI YATR 7 cut(s) 68, 82, 214, 265, 284, 336, 449
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 4 cut(s) 80, 212, 263, 334
Fnu4HI GCNGC 3 cut(s) 32, 210, 240
FokI GGATG 2 cut(s) 320, 491
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 3 cut(s) 32, 210, 240
FspBI CTAG 1 cut(s) 539
GluI GCNGC 3 cut(s) 32, 210, 240
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 220
Hin1II CATG 4 cut(s) 84, 216, 267, 338
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 228, 551
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 154, 208
HpyCH4III ACNGT 3 cut(s) 12, 353, 572
HpyCH4V TGCA 7 cut(s) 34, 66, 153, 212, 242, 349, 464
HpyF3I CTNAG 3 cut(s) 92, 102, 290
Hsp92II CATG 4 cut(s) 84, 216, 267, 338
KpnI GGTACC 1 cut(s) 360
Kzo9I GATC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 147, 233, 290, 373, 470
Lsp1109I GCAGC 3 cut(s) 18, 196, 226
LweI GCATC 3 cut(s) 125, 336, 469
MaeI CTAG 1 cut(s) 539
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 2 cut(s) 111, 535
MfeI CAATTG 1 cut(s) 148
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 1 cut(s) 148
MnlI CCTC 7 cut(s) 84, 88, 172, 224, 229, 462, 523
MseI TTAA 2 cut(s) 45, 561
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 220
MunI CAATTG 1 cut(s) 148
NciI CCSGG 1 cut(s) 220
NdeII GATC 1 cut(s) 224
NlaIII CATG 4 cut(s) 84, 216, 267, 338
NlaIV GGNNCC 2 cut(s) 218, 358
PaeR7I CTCGAG 1 cut(s) 228
PkrI GCNGC 3 cut(s) 33, 211, 241
PspN4I GGNNCC 2 cut(s) 218, 358
PspPI GGNCC 2 cut(s) 216, 471
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 45, 561
SatI GCNGC 3 cut(s) 32, 210, 240
Sau3AI GATC 1 cut(s) 224
Sau96I GGNCC 2 cut(s) 216, 471
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 510
SetI ASST 9 cut(s) 22, 73, 108, 164, 195, 211, 253, 459, 473
SfaNI GCATC 3 cut(s) 125, 336, 469
SfcI CTRYAG 1 cut(s) 32
Sfr274I CTCGAG 1 cut(s) 228
SinI GGWCC 2 cut(s) 216, 471
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 2 cut(s) 393, 474
TaaI ACNGT 3 cut(s) 12, 353, 572
TaqI TCGA 3 cut(s) 205, 229, 442
TasI AATT 1 cut(s) 148
Tru1I TTAA 2 cut(s) 45, 561
Tru9I TTAA 2 cut(s) 45, 561
TseI GCWGC 3 cut(s) 31, 209, 239
TspGWI ACGGA 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 216, 471
XhoI CTCGAG 1 cut(s) 228
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.