Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Forward (+)

24141997 .. 24144790

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33410.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTTGAAGCAATCACCCAGTAGAAACCAGAGGGTAAAAGGCTTCAAGGTAAAGCATGCTGTTCAGATATCTTTGTTGCTTGCTATATGCATCTGGCTGGTTTACCAACTCGATCACTCCCATGGTAAAAAAGAACTTGAAGTGAGCTCTGCAGAGAAGATATCTGGAGAAATGCAAATTGAGCATGGAGTACTAGAACTTGGGAGGCGGGGCCTCCATCCTCGCATGGAAGAAACTCCTGTGGATGTTGGAAGGAATATGGAAAAGGAGGAAGAATATGAAGAAGAGGTAGATGAGACTAAAGCTGAAGAAAGTGAGGGGGGAGGAAGAGGAGGTAGAGATGAAGTTGACGGGAATGATCAAGAGAAATCTGAGGAATCTGAGGGGGTAGAGGATTTGATTGATGTAGATGATACGGTGAGAGGAGAAGAAGAAGAAAATGAAGAACAAGAGAGTGAAGAGAAAGGAAATGACTTGGAGGATCAAGTACAAATTAAAGATAAAAGGTACAGCCAAGAGGCAAGAGAGGAGCAATACAAGGGTGATGATGCATCCAGTGCTGTGAAGCAGAACATTGGCACTACAAACAACCAAATCGAAGTTGGAAGCTTGAGAAGAGTGAAGGAAGAAGAGGTAGACAGTGCAGAAACTTTTGATTTACAGATAGATAATAAAGCCACTGGTGAAGAAAGAGGTGATCAGTTTGGTTCAGCCAAGATAGATGGTCAAACATATGCTGGTTCATCAACCAATACAAGTGAAAAAACAAAAATGGAGCAATGGTTCTCTTTATGGTACAGAAATGCAGCTACTCAAGTTATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

31.11

Weight (kDa)

4.51

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	826
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	4 cut(s)	192, 489, 509, 797
AgsI	TTSAA	3 cut(s)	7, 46, 140
AloI	GAACNNNNNNTCC	2 cut(s)	767, 799
AluBI	AGCT	4 cut(s)	147, 305, 609, 809
AluI	AGCT	4 cut(s)	147, 305, 609, 809
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	806
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	5 cut(s)	6, 430, 554, 695, 707
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	818
BccI	CCATC	2 cut(s)	225, 716
BclI	TGATCA	2 cut(s)	358, 697
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	807
BlsI	GCNGC	1 cut(s)	808
BmcAI	AGTACT	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	3 cut(s)	99, 538, 560
BmuI	ACTGGG	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	2 cut(s)	631, 798
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bse1I	ACTGG	3 cut(s)	18, 555, 685
Bse3DI	GCAATG	1 cut(s)	785
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	3 cut(s)	217, 250, 551
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	2 cut(s)	363, 372
BseNI	ACTGG	3 cut(s)	18, 555, 685
BseRI	GAGGAG	3 cut(s)	345, 438, 542
BseXI	GCAGC	1 cut(s)	818
BsgI	GTGCAG	1 cut(s)	663
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	112, 358, 481, 697
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	364, 373
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	3 cut(s)	18, 555, 685
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	4 cut(s)	112, 358, 481, 697
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	418, 641
Bst6I	CTCTTC	5 cut(s)	279, 322, 453, 610, 624
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	57, 81
BstDEI	CTNAG	2 cut(s)	372, 381
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	3 cut(s)	217, 250, 551
BstKTI	GATC	4 cut(s)	115, 361, 484, 700
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	4 cut(s)	112, 358, 481, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 557
BstNSI	RCATGY	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	818
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	217, 250, 551
BtsIMutI	CAGTG	3 cut(s)	562, 646, 678
Cac8I	GCNNGC	2 cut(s)	57, 81
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	4 cut(s)	191, 488, 508, 796
CviAII	CATG	4 cut(s)	56, 122, 185, 226
CviQI	GTAC	4 cut(s)	191, 488, 508, 796
DdeI	CTNAG	2 cut(s)	372, 381
DpnI	GATC	4 cut(s)	114, 360, 483, 699
DpnII	GATC	4 cut(s)	112, 358, 481, 697
Eam1104I	CTCTTC	5 cut(s)	279, 322, 453, 610, 624
EarI	CTCTTC	5 cut(s)	279, 322, 453, 610, 624
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	149
Eco32I	GATATC	2 cut(s)	69, 162
Eco53kI	GAGCTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRV	GATATC	2 cut(s)	69, 162
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	2 cut(s)	92, 553
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	4 cut(s)	59, 125, 188, 229
FatI	CATG	4 cut(s)	55, 121, 184, 225
FauI	CCCGC	1 cut(s)	201
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	2 cut(s)	358, 697
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	1 cut(s)	807
FokI	GGATG	3 cut(s)	204, 257, 538
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	807
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	807
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	59, 125, 188, 229
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	1 cut(s)	377
HphI	GGTGA	5 cut(s)	6, 430, 554, 695, 707
Hpy166II	GTNNAC	3 cut(s)	103, 349, 637
Hpy188I	TCNGA	3 cut(s)	66, 373, 382
Hpy188III	TCNNGA	2 cut(s)	165, 362
Hpy8I	GTNNAC	3 cut(s)	103, 349, 637
HpyAV	CCTTC	2 cut(s)	246, 616
HpyCH4III	ACNGT	2 cut(s)	418, 641
HpyCH4V	TGCA	6 cut(s)	90, 152, 175, 551, 644, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 557
HpyF3I	CTNAG	2 cut(s)	372, 381
Hsp92II	CATG	4 cut(s)	59, 125, 188, 229
Ksp22I	TGATCA	2 cut(s)	358, 697
Kzo9I	GATC	4 cut(s)	112, 358, 481, 697
LmnI	GCTCC	2 cut(s)	529, 775
LpnPI	CCDG	9 cut(s)	31, 41, 79, 83, 150, 252, 568, 666, 723
Lsp1109I	GCAGC	1 cut(s)	818
LweI	GCATC	3 cut(s)	99, 538, 560
MaeI	CTAG	1 cut(s)	194
MalI	GATC	4 cut(s)	114, 360, 483, 699
MboI	GATC	4 cut(s)	112, 358, 481, 697
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	2 cut(s)	177, 492
MmeI	TCCRAC	2 cut(s)	229, 583
Mph1103I	ATGCAT	2 cut(s)	92, 553
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	181, 557
NcoI	CCATGG	1 cut(s)	121
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	4 cut(s)	112, 358, 481, 697
NlaIII	CATG	4 cut(s)	59, 125, 188, 229
NlaIV	GGNNCC	1 cut(s)	212
NsiI	ATGCAT	2 cut(s)	92, 553
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	808
PsiI	TTATAA	1 cut(s)	826
Psp124BI	GAGCTC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	154
RsaI	GTAC	4 cut(s)	192, 489, 509, 797
RsaNI	GTAC	4 cut(s)	191, 488, 508, 796
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	1 cut(s)	807
Sau3AI	GATC	4 cut(s)	112, 358, 481, 697
Sau96I	GGNCC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	149
SfaNI	GCATC	3 cut(s)	99, 538, 560
SfcI	CTRYAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	610, 813
SmoI	CTYRAG	2 cut(s)	610, 813
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	2 cut(s)	177, 492
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	418, 641
TaqI	TCGA	2 cut(s)	111, 597
TasI	AATT	2 cut(s)	177, 492
TatI	WGTACW	2 cut(s)	190, 487
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	3 cut(s)	562, 646, 685
TseI	GCWGC	1 cut(s)	806
TspDTI	ATGAA	4 cut(s)	294, 357, 456, 732
TspRI	CASTG	3 cut(s)	562, 646, 685
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	192
Zsp2I	ATGCAT	2 cut(s)	92, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.