Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Forward (+)

12735227 .. 12736288

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCCCACAAAACTCAGAATGCGACACAAGATAATGAACACGGCAGTTCAGAAAATTCTAATGAAGAAAAGCAGTTTGGAGACAAAGAGATTAATACAAATAGCACTGAAGTGGTTGATGTTGATCAAAACAAGTCTGTCTCAAATGTGGAAGTGACTGAAAAGATTGAACTGAATGGTAATGAAAAGGCCAAGGAAACTGAAGTGGGCAGTGGTGAGAGTAATCTCTTGGAACCAGACAATGGTTCCACGCCTAATCCAACGGAACAGAAACAAGTGGACACCAAGACAGATGACTCTACACCGAAAAATTCAACCGATCAGCTGCAAATGGACACAAAGATGGATGACTCTACACCGCAAGGTTCTACAGATCAGCCTCAAGTGGAGACTAAGTCCGATGACTCTACACAGCAAAACGTTGTATTAGAGCAAACCGAGAGATCTGATGTAGCTGCCAAAAGTGAGCAACAAGACTCTAGCACAACAGCTTCGACTATAACTGAGAATGGTGATGCTACAAATGGAGTAACCCCAGATACTTCTAGTAATTCTGAATCTGGTGTCTCGGATGGTCAGACTGTCAACTCCAGTACACCTACGGAAACAGATAAAAGTTCTGCACCTTCAACCATGAGCATTGTTCAGACTCAAAAGCTCAGCAGTAACACCGAGGTAGAAGGAACACAGGAAAATATACTCTCTCAAAAAACAAACGAGAATGAAGATGCTGGCCAAAAGCAAGGTGGTGATTCTTCTTCCTTTCAACAAGAGAAAGATGCCCCCTCAAACCCAGATAACAAATTGGATGCGAGCCAGAACGAAAATGGCAGTGGTGTTCCAAACAAACCAAACGAAAACGCTGATACAGGTGCAGGCCATAAGGAAGAATCAGTTGACTCGTCAAATTCTTCAGCATCCCAGGACAAAGAAGAATCGTCAAACGCCAATACTAATGTTGAGGACAAAACTGCATCCCAGGACAAAGAAGAATCGTCATATTCTTCAGCATCCCAGGACAAAACTGCAACTAATAACAGTGATCATACGGCCGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

37.49

Weight (kDa)

4.14

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	242
AciI	CCGC	2 cut(s)	359, 1053
AclI	AACGTT	1 cut(s)	420
AcoI	YGGCCR	2 cut(s)	733, 1050
AcsI	RAATTY	3 cut(s)	55, 310, 907
AcuI	CTGAAG	4 cut(s)	129, 222, 897, 990
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	4 cut(s)	170, 315, 630, 767
AjnI	CCWGG	3 cut(s)	921, 978, 1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	4 cut(s)	325, 455, 491, 658
AluI	AGCT	4 cut(s)	325, 455, 491, 658
Alw26I	GTCTC	4 cut(s)	75, 145, 383, 571
AoxI	GGCC	5 cut(s)	3, 189, 733, 877, 1050
ApeKI	GCWGC	2 cut(s)	325, 455
ApoI	RAATTY	3 cut(s)	55, 310, 907
AseI	ATTAAT	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	227, 524, 761
BalI	TGGCCA	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	312, 442
BccI	CCATC	2 cut(s)	337, 566
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	3 cut(s)	923, 980, 1016
BclI	TGATCA	2 cut(s)	124, 1042
BcoDI	GTCTC	4 cut(s)	75, 145, 383, 571
BfaI	CTAG	2 cut(s)	480, 546
BfmI	CTRYAG	1 cut(s)	369
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	3 cut(s)	326, 456, 1053
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	3 cut(s)	327, 457, 1054
Bme1390I	CCNGG	3 cut(s)	923, 980, 1016
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	234, 247
BmrFI	CCNGG	3 cut(s)	923, 980, 1016
BmsI	GCATC	7 cut(s)	505, 718, 769, 799, 926, 983, 1019
BpmI	CTGGAG	1 cut(s)	574
Bpu1102I	GCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	192, 672, 921, 978, 1014
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	3 cut(s)	923, 980, 1016
BseDI	CCNNGG	5 cut(s)	192, 672, 921, 978, 1014
BseGI	GGATG	6 cut(s)	352, 577, 814, 917, 974, 1010
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	4 cut(s)	29, 495, 673, 1047
BseNI	ACTGG	1 cut(s)	591
BseX3I	CGGCCG	1 cut(s)	1050
BseXI	GCAGC	2 cut(s)	312, 442
BsgI	GTGCAG	2 cut(s)	606, 894
Bsh1285I	CGRYCG	1 cut(s)	1053
BshFI	GGCC	5 cut(s)	5, 191, 735, 879, 1052
BsiEI	CGRYCG	1 cut(s)	1053
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	4 cut(s)	75, 145, 383, 571
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	5 cut(s)	5, 191, 735, 879, 1052
Bsp143I	GATC	5 cut(s)	124, 319, 373, 443, 1042
Bsp1720I	GCTNAGC	1 cut(s)	659
BspACI	CCGC	2 cut(s)	359, 1053
BspANI	GGCC	5 cut(s)	5, 191, 735, 879, 1052
BspCNI	CTCAG	4 cut(s)	28, 496, 672, 1048
BspLI	GGNNCC	2 cut(s)	234, 247
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	5 cut(s)	192, 672, 921, 978, 1014
BssMI	GATC	5 cut(s)	124, 319, 373, 443, 1042
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	923, 980, 1016
Bst4CI	ACNGT	2 cut(s)	583, 1040
BstC8I	GCNNGC	3 cut(s)	733, 814, 877
BstDEI	CTNAG	5 cut(s)	15, 393, 504, 659, 1056
BstF5I	GGATG	6 cut(s)	352, 577, 814, 917, 974, 1010
BstKTI	GATC	5 cut(s)	127, 322, 376, 446, 1045
BstMAI	GTCTC	4 cut(s)	75, 145, 383, 571
BstMBI	GATC	5 cut(s)	124, 319, 373, 443, 1042
BstMCI	CGRYCG	1 cut(s)	1053
BstNI	CCWGG	3 cut(s)	923, 980, 1016
BstSCI	CCNGG	3 cut(s)	921, 978, 1014
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	312, 442
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BstZI	CGGCCG	1 cut(s)	1050
BsuRI	GGCC	5 cut(s)	5, 191, 735, 879, 1052
BtsCI	GGATG	6 cut(s)	352, 577, 814, 917, 974, 1010
BtsI	GCAGTG	2 cut(s)	217, 838
BtsIMutI	CAGTG	4 cut(s)	105, 217, 838, 1045
Cac8I	GCNNGC	3 cut(s)	733, 814, 877
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	1 cut(s)	634
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	5 cut(s)	15, 393, 504, 659, 1056
DpnI	GATC	5 cut(s)	126, 321, 375, 445, 1044
DpnII	GATC	5 cut(s)	124, 319, 373, 443, 1042
EaeI	YGGCCR	2 cut(s)	733, 1050
EagI	CGGCCG	1 cut(s)	1050
EclXI	CGGCCG	1 cut(s)	1050
Eco130I	CCWWGG	1 cut(s)	192
Eco52I	CGGCCG	1 cut(s)	1050
Eco57I	CTGAAG	4 cut(s)	129, 222, 897, 990
EcoRII	CCWGG	3 cut(s)	921, 978, 1014
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	637
FaiI	YATR	6 cut(s)	500, 635, 698, 882, 1000, 1047
FatI	CATG	1 cut(s)	633
FbaI	TGATCA	2 cut(s)	124, 1042
Fnu4HI	GCNGC	3 cut(s)	326, 456, 1053
FokI	GGATG	6 cut(s)	359, 584, 821, 904, 961, 997
Fsp4HI	GCNGC	3 cut(s)	326, 456, 1053
FspBI	CTAG	2 cut(s)	480, 546
GluI	GCNGC	3 cut(s)	326, 456, 1053
GsuI	CTGGAG	1 cut(s)	574
HaeIII	GGCC	5 cut(s)	5, 191, 735, 879, 1052
Hin1II	CATG	1 cut(s)	637
HincII	GTYRAC	2 cut(s)	586, 898
HindII	GTYRAC	2 cut(s)	586, 898
HphI	GGTGA	3 cut(s)	227, 524, 761
Hpy166II	GTNNAC	4 cut(s)	280, 586, 596, 898
Hpy188I	TCNGA	8 cut(s)	18, 52, 400, 448, 556, 571, 579, 648
Hpy8I	GTNNAC	4 cut(s)	280, 586, 596, 898
HpyAV	CCTTC	2 cut(s)	636, 674
HpyCH4III	ACNGT	2 cut(s)	583, 1040
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	5 cut(s)	328, 623, 875, 974, 1028
HpyF3I	CTNAG	5 cut(s)	15, 393, 504, 659, 1056
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	1 cut(s)	637
Ksp22I	TGATCA	2 cut(s)	124, 1042
Kzo9I	GATC	5 cut(s)	124, 319, 373, 443, 1042
Lsp1109I	GCAGC	2 cut(s)	312, 442
LweI	GCATC	7 cut(s)	505, 718, 769, 799, 926, 983, 1019
MaeI	CTAG	2 cut(s)	480, 546
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	3 cut(s)	154, 529, 665
MalI	GATC	5 cut(s)	126, 321, 375, 445, 1044
MboI	GATC	5 cut(s)	124, 319, 373, 443, 1042
MboII	GAAGA	9 cut(s)	77, 737, 747, 750, 899, 903, 944, 996, 1001
MflI	RGATCY	1 cut(s)	443
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	5 cut(s)	55, 310, 550, 803, 907
MluNI	TGGCCA	1 cut(s)	735
MlyI	GAGTC	6 cut(s)	290, 344, 398, 470, 643, 893
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	4 cut(s)	390, 667, 796, 955
Mox20I	TGGCCA	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	2 cut(s)	110, 341
Msp20I	TGGCCA	1 cut(s)	735
MspA1I	CMGCKG	2 cut(s)	325, 1055
MspR9I	CCNGG	3 cut(s)	923, 980, 1016
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	3 cut(s)	923, 980, 1016
NdeII	GATC	5 cut(s)	124, 319, 373, 443, 1042
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	2 cut(s)	234, 247
NmuCI	GTSAC	1 cut(s)	154
OliI	CACNNNNGTG	1 cut(s)	110
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	5 cut(s)	557, 752, 890, 935, 992
PflFI	GACNNNGTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	327, 457, 1054
PleI	GAGTC	6 cut(s)	290, 344, 398, 470, 643, 893
PpsI	GAGTC	6 cut(s)	290, 344, 398, 470, 643, 893
PshBI	ATTAAT	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	420
Psp6I	CCWGG	3 cut(s)	921, 978, 1014
PspGI	CCWGG	3 cut(s)	921, 978, 1014
PspN4I	GGNNCC	2 cut(s)	234, 247
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	443
PsyI	GACNNNGTC	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	2 cut(s)	110, 341
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	3 cut(s)	326, 456, 1053
Sau3AI	GATC	5 cut(s)	124, 319, 373, 443, 1042
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	6 cut(s)	290, 344, 398, 470, 643, 893
ScrFI	CCNGG	3 cut(s)	923, 980, 1016
SfaNI	GCATC	7 cut(s)	505, 718, 769, 799, 926, 983, 1019
SfcI	CTRYAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	2 cut(s)	110, 341
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	5 cut(s)	55, 310, 550, 803, 907
SsiI	CCGC	2 cut(s)	359, 1053
SspMI	CTAG	2 cut(s)	480, 546
StyD4I	CCNGG	3 cut(s)	921, 978, 1014
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	583, 1040
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	494
TasI	AATT	5 cut(s)	55, 310, 550, 803, 907
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	1 cut(s)	1055
TfiI	GAWTC	5 cut(s)	557, 752, 890, 935, 992
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	4 cut(s)	112, 217, 838, 1045
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	325, 455
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	51, 78, 198, 738
TspGWI	ACGGA	2 cut(s)	278, 617
TspRI	CASTG	4 cut(s)	112, 217, 838, 1045
Tth111I	GACNNNGTC	1 cut(s)	394
Van91I	CCANNNNNTGG	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	93
XapI	RAATTY	3 cut(s)	55, 310, 907
XcmI	CCANNNNNNNNNTGG	2 cut(s)	743, 824
XspI	CTAG	2 cut(s)	480, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.