Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Reverse (-)

44470794 .. 44474211

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G544100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTTGAAGCAATCACCCAGTAGGAACCAGAGGTCAAAAGGCTTCAAGGTGAAGCATGCTCTTCAGATATTTCTGCTGCTTGCTATTTGCATCTGGTTGCTTTACCAGCTCAAGCACTCCCATGATAAGAAAGCATATGAAGAGAGCTCTGCAAAGATTTCGGGAAAGATGCAGAATGGGCAAGAAACAATAAAACTTGGGAGGCGTAGCCTCCATCCTCGGGTGGAGGAAACTTCCTTGGATATTGGAAGGCATAGGGAAAAAGAAGAAGAATCTGAAGAAGAGGTAGATGAGAGTAAAGATGAAGAAAGTGAGGAGGAAGGAAGAGGTGCTGAAGATGATGAAATAGACGGGCATGATCAAGAGAGAGCTGAGGACGAGTCTGAAGGAGTAGAGGATTTGATTGATGAAGAAGATACGGAGAGGGAAGAGGAAAGTGAAGAGAAGGGAAATGATTTGGAGATTCCCAGATTGCTAGAGGATCAAGCCCAAAATGAAGATACAAGGAGCACCCAGGAGGCCAGAGAGGAACAGTACAAGGGTGATGATGCATCCAGTGCTGTGAAACAGAACACCCAAAAACTAAGCAGTGAAATTGAAGTCGGAAGCTTGAGAAAAGTGAAGGAAGAAGAGGTAGATAAAGAGAATAAAACCAATGGTATCCTAGATTTTAGAGTTGATACAGATGATTCAGGCCCTAAATTTGGTAATATTGGCACAGCTAAATATGCTGCTGTTGACAATGCTGTGTATGGTGAAGAAAGAGGTAATCATTTTGGTTCGTCCAACTTAGATGTTCAGGCATATACTAATTCATCAATCAACACGATTGAACAAGCAAAAATGAGCAATGATTCGACGGTGGCGCTGGTTGAATTCGCTGATTCTCTTGATGGAACAGAGATGTTACCAAAGTTGTACAAGGATGCAAGTCTAACTTCTAGCCGAAGGCACTCATACTTGGAAGCTGTTTCGGGGAAGGAGAACGAAAACCCCAAATCCAAGGATATGCAGTTAGGTTCCAGTATGACATTATCTGCAACTGAGAATTTAGATGCACCCAAGCAAGAAATGAAAGTTTCTATTGGTTCTGAAACAGAAAGTGTTGTCGTATCAGAAGCAATTGCAGATCTTGAGAAAAGCTCTGCTCCTAAAACCACCAATGAGAATGACCAGGAAGTTGCTAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

44.35

Weight (kDa)

4.54

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	489
AcsI	RAATTY	3 cut(s)	701, 875, 1048
AcuI	CTGAAG	4 cut(s)	47, 297, 354, 405
AfaI	GTAC	2 cut(s)	536, 920
AfiI	CCNNNNNNNGG	2 cut(s)	220, 704
AgsI	TTSAA	5 cut(s)	7, 46, 599, 833, 875
AjnI	CCWGG	2 cut(s)	513, 1173
AluBI	AGCT	7 cut(s)	109, 147, 371, 609, 722, 968, 1143
AluI	AGCT	7 cut(s)	109, 147, 371, 609, 722, 968, 1143
Alw21I	GWGCWC	2 cut(s)	149, 512
AlwI	GGATC	1 cut(s)	489
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	2 cut(s)	519, 694
ApeKI	GCWGC	2 cut(s)	76, 731
ApoI	RAATTY	3 cut(s)	701, 875, 1048
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	4 cut(s)	6, 61, 554, 767
AvaI	CYCGRG	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	2 cut(s)	149, 512
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	63, 718
BccI	CCATC	2 cut(s)	222, 887
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	2 cut(s)	515, 1175
BciVI	GTATCC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	358
BfaI	CTAG	3 cut(s)	476, 665, 942
BfoI	RGCGCY	1 cut(s)	869
BfuI	GTATCC	1 cut(s)	671
BglII	AGATCT	1 cut(s)	1129
BisI	GCNGC	2 cut(s)	77, 732
BlsI	GCNGC	2 cut(s)	78, 733
Bme1390I	CCNGG	2 cut(s)	515, 1175
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	26, 1021
BmrFI	CCNGG	2 cut(s)	515, 1175
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	6 cut(s)	99, 159, 538, 560, 916, 1045
BmuI	ACTGGG	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	1127, 1159
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	3 cut(s)	95, 631, 1154
BsaJI	CCNNGG	4 cut(s)	218, 237, 513, 1002
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 704
Bse1I	ACTGG	3 cut(s)	18, 555, 1023
Bse3DI	GCAATG	1 cut(s)	856
BseBI	CCWGG	2 cut(s)	515, 1175
BseDI	CCNNGG	4 cut(s)	218, 237, 513, 1002
BseGI	GGATG	3 cut(s)	214, 551, 931
BseLI	CCNNNNNNNGG	2 cut(s)	220, 704
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	2 cut(s)	363, 1035
BseNI	ACTGG	3 cut(s)	18, 555, 1023
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	63, 718
BshFI	GGCC	2 cut(s)	521, 696
BsiHKAI	GWGCWC	2 cut(s)	149, 512
BsiHKCI	CYCGRG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	220, 704
BsnI	GGCC	2 cut(s)	521, 696
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	149, 512
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	3 cut(s)	358, 481, 1129
BspANI	GGCC	2 cut(s)	521, 696
BspCNI	CTCAG	2 cut(s)	364, 1036
BspLI	GGNNCC	2 cut(s)	26, 1021
BspPI	GGATC	1 cut(s)	489
BspQI	GCTCTTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	856
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	3 cut(s)	18, 555, 1023
BssECI	CCNNGG	4 cut(s)	218, 237, 513, 1002
BssMI	GATC	3 cut(s)	358, 481, 1129
BssT1I	CCWWGG	2 cut(s)	237, 1002
Bst2UI	CCWGG	2 cut(s)	515, 1175
Bst4CI	ACNGT	2 cut(s)	534, 862
Bst6I	CTCTTC	7 cut(s)	66, 135, 276, 319, 423, 435, 624
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	918
BstC8I	GCNNGC	2 cut(s)	57, 81
BstDEI	CTNAG	4 cut(s)	372, 584, 790, 1044
BstF5I	GGATG	3 cut(s)	214, 551, 931
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	3 cut(s)	361, 484, 1132
BstMBI	GATC	3 cut(s)	358, 481, 1129
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 178, 557, 728
BstNI	CCWGG	2 cut(s)	515, 1175
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	513, 1173
BstV1I	GCAGC	2 cut(s)	63, 718
BstX2I	RGATCY	1 cut(s)	1129
BstYI	RGATCY	1 cut(s)	1129
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	521, 696
BtsCI	GGATG	3 cut(s)	214, 551, 931
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	562, 595
Cac8I	GCNNGC	2 cut(s)	57, 81
CfoI	GCGC	1 cut(s)	868
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	2 cut(s)	535, 919
CviAII	CATG	3 cut(s)	56, 122, 356
CviQI	GTAC	2 cut(s)	535, 919
DdeI	CTNAG	4 cut(s)	372, 584, 790, 1044
DpnI	GATC	3 cut(s)	360, 483, 1131
DpnII	GATC	3 cut(s)	358, 481, 1129
Eam1104I	CTCTTC	7 cut(s)	66, 135, 276, 319, 423, 435, 624
EarI	CTCTTC	7 cut(s)	66, 135, 276, 319, 423, 435, 624
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	237, 1002
Eco24I	GRGCYC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	147
Eco57I	CTGAAG	4 cut(s)	47, 297, 354, 405
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	875
EcoRII	CCWGG	2 cut(s)	513, 1173
EcoT14I	CCWWGG	2 cut(s)	237, 1002
EcoT22I	ATGCAT	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	2 cut(s)	237, 1002
FaeI	CATG	3 cut(s)	59, 125, 359
FalI	AAGNNNNNCTT	2 cut(s)	922, 954
FatI	CATG	3 cut(s)	55, 121, 355
FauNDI	CATATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	77, 732
FokI	GGATG	3 cut(s)	201, 538, 938
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	77, 732
FspBI	CTAG	3 cut(s)	476, 665, 942
GlaI	GCGC	1 cut(s)	867
GluI	GCNGC	2 cut(s)	77, 732
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	2 cut(s)	521, 696
HhaI	GCGC	1 cut(s)	868
Hin1II	CATG	3 cut(s)	59, 125, 359
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	6 cut(s)	272, 380, 463, 689, 854, 884
HphI	GGTGA	4 cut(s)	6, 61, 554, 767
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	6 cut(s)	66, 277, 385, 605, 1093, 1117
Hpy188III	TCNNGA	4 cut(s)	162, 362, 890, 1133
Hpy8I	GTNNAC	1 cut(s)	739
Hpy99I	CGWCG	1 cut(s)	862
HpyAV	CCTTC	7 cut(s)	243, 314, 380, 439, 616, 942, 973
HpyCH4III	ACNGT	2 cut(s)	534, 862
HpyCH4V	TGCA	9 cut(s)	90, 152, 172, 551, 929, 1012, 1040, 1058, 1127
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 178, 557, 728
HpyF3I	CTNAG	4 cut(s)	372, 584, 790, 1044
Hsp92II	CATG	3 cut(s)	59, 125, 359
HspAI	GCGC	1 cut(s)	866
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	358, 481, 1129
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	507, 1153
Lsp1109I	GCAGC	2 cut(s)	63, 718
LweI	GCATC	6 cut(s)	99, 159, 538, 560, 916, 1045
MaeI	CTAG	3 cut(s)	476, 665, 942
MaeIII	GTNAC	1 cut(s)	906
MalI	GATC	3 cut(s)	360, 483, 1131
MboI	GATC	3 cut(s)	358, 481, 1129
MfeI	CAATTG	1 cut(s)	1122
MflI	RGATCY	1 cut(s)	1129
MhlI	GDGCHC	2 cut(s)	149, 512
MluCI	AATT	6 cut(s)	594, 701, 811, 875, 1048, 1122
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	2 cut(s)	583, 810
Mph1103I	ATGCAT	1 cut(s)	553
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	2 cut(s)	515, 1175
MunI	CAATTG	1 cut(s)	1122
MvaI	CCWGG	2 cut(s)	515, 1175
MwoI	GCNNNNNNNGC	4 cut(s)	106, 178, 557, 728
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	3 cut(s)	358, 481, 1129
NlaIII	CATG	3 cut(s)	59, 125, 359
NlaIV	GGNNCC	2 cut(s)	26, 1021
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	66
PfeI	GAWTC	5 cut(s)	272, 463, 689, 854, 884
PkrI	GCNGC	2 cut(s)	78, 733
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	513, 1173
PspGI	CCWGG	2 cut(s)	513, 1173
PspN4I	GGNNCC	2 cut(s)	26, 1021
PspPI	GGNCC	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	1129
RsaI	GTAC	2 cut(s)	536, 920
RsaNI	GTAC	2 cut(s)	535, 919
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	2 cut(s)	77, 732
Sau3AI	GATC	3 cut(s)	358, 481, 1129
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	515, 1175
SduI	GDGCHC	2 cut(s)	149, 512
SfaNI	GCATC	6 cut(s)	99, 159, 538, 560, 916, 1045
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	3 cut(s)	110, 610, 1133
SmoI	CTYRAG	3 cut(s)	110, 610, 1133
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	6 cut(s)	594, 701, 811, 875, 1048, 1122
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	3 cut(s)	476, 665, 942
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	513, 1173
StyI	CCWWGG	2 cut(s)	237, 1002
TaaI	ACNGT	2 cut(s)	534, 862
TaqI	TCGA	1 cut(s)	857
TasI	AATT	6 cut(s)	594, 701, 811, 875, 1048, 1122
TatI	WGTACW	2 cut(s)	534, 918
TfiI	GAWTC	5 cut(s)	272, 463, 689, 854, 884
TscAI	CASTG	2 cut(s)	562, 595
TseI	GCWGC	2 cut(s)	76, 731
TspDTI	ATGAA	7 cut(s)	153, 318, 357, 423, 510, 804, 1088
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	2 cut(s)	562, 595
XapI	RAATTY	3 cut(s)	701, 875, 1048
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	3 cut(s)	476, 665, 942
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.