Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Reverse (-)

14960277 .. 14962393

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001388

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAGCTTTGTGTGACTTTTCTTCAGCTCCATTCAAGGACAGACACAGAGACAGAGAGCATTATTCACACCCCTCAACGACTTCTCTGTCCTCCTCTCCTCAGCCACATATTTGAAGAGCAGAAAGAAAAGGGTGTCTTGAGAGTGGAGTTTGTTTGGCCCGTCATTGTTTTCATTGTCTACCAATCAAGACTTCCAAGATTGGCTCACAACTTGCTGCTGCTAATTGGTGAAGTTATATACAATTTCGTATTAACCATGTTGAAGCAATCACCCAGCAGAAACCAGAGGGTAAAAGGCTTCAAGGTAAAGCATGCTGTTCAGATATCTTTGTTGCTTGCTATTTGCATCTGGCTGGTTTACCAACTCAATCACTCCCATGGTAAAAAAGCACTTGAAGTCAGCTCTGCAGAGAAGATATCAGGAGAGGTGCAAAATGAGCATGGAGTACTAGAACTTGGGAGACGGGGCCTCCGTCCTCGTGTGGAAGAAACTTCGATGGATGTTGGAAGGCATAGGGAAAAAGAGGAAGAATCAGAAGAAGAGGCAGATGAGACTAAAGCTGAAGAAAGTGAGGAGGAAGGAAGAGGCGGTGAAGATGAAGTTGACGGGCATGATCAAGAGAAATCCGAGGAAGAATCTGAGGGGGTAGAGGATTTGATTGATGAAGATGATACGGAGAGAGAAGAAGAAAGTGAAGAACAAGAGAGTGAAGAGCAAGGAAATGATTTGGAGGATCAAGTTCAAAATAGAGATACAAGGTATAGCCAAGATGCAAGAGAGGAGCAATACAAGGGTGATGATACATCCAGTGCTGTGAAGCAGAACATCCGCACTATAAGCAACCAAATCGAAATTGGAAGCTTGAGAAGAGTGAAGGAAGAAGAGGTAGACACTGCAGAAAATATTGATTTAGAGAAAGATAATAAAGCCACTGGTGAAACAAAAGGTAATCAGTTTGGTTCAGTCAAGATAGATGGTCAAACAGATGCTGGTTCATCAACCACTGCAAGTGAAAAACCAAAAAGGAGCCATGGTTCTCTTTATGGAACAGAGATGCTACTTAAGTTATATTACGATTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

41.24

Weight (kDa)

4.73

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
AccI	GTMKAC	2 cut(s)	180, 891
AciI	CCGC	2 cut(s)	591, 832
AclWI	GGATC	1 cut(s)	744
AcuI	CTGAAG	2 cut(s)	8, 585
AfaI	GTAC	1 cut(s)	450
AflII	CTTAAG	1 cut(s)	1064
AgsI	TTSAA	7 cut(s)	36, 116, 265, 304, 398, 746, 1083
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AloI	GAACNNNNNNTCC	2 cut(s)	1021, 1053
AluBI	AGCT	5 cut(s)	7, 28, 405, 563, 864
AluI	AGCT	5 cut(s)	7, 28, 405, 563, 864
Alw26I	GTCTC	3 cut(s)	44, 457, 548
AlwI	GGATC	1 cut(s)	744
AlwNI	CAGNNNCTG	1 cut(s)	992
AoxI	GGCC	2 cut(s)	158, 469
ApeKI	GCWGC	2 cut(s)	217, 220
AspS9I	GGNCC	2 cut(s)	159, 469
AsuHPI	GGTGA	5 cut(s)	242, 264, 605, 809, 950
BauI	CACGAG	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	204, 207
BccI	CCATC	2 cut(s)	493, 971
BcgI	CGANNNNNNTGC	2 cut(s)	832, 866
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	3 cut(s)	44, 457, 548
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	2 cut(s)	408, 897
BfrI	CTTAAG	1 cut(s)	1064
BisI	GCNGC	2 cut(s)	218, 221
BlsI	GCNGC	2 cut(s)	219, 222
BmcAI	AGTACT	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	159, 469
BmiI	GGNNCC	2 cut(s)	470, 1031
BmsI	GCATC	4 cut(s)	357, 763, 979, 1047
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	2 cut(s)	160, 886
BsaJI	CCNNGG	3 cut(s)	379, 630, 1033
BsaXI	ACNNNNNCTCC	4 cut(s)	456, 486, 1021, 1051
Bse1I	ACTGG	2 cut(s)	810, 940
BseDI	CCNNGG	3 cut(s)	379, 630, 1033
BseGI	GGATG	3 cut(s)	508, 806, 828
BseMII	CTCAG	2 cut(s)	115, 633
BseNI	ACTGG	2 cut(s)	810, 940
BseRI	GAGGAG	4 cut(s)	84, 89, 590, 797
BseXI	GCAGC	2 cut(s)	204, 207
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	160, 471
BsmAI	GTCTC	3 cut(s)	44, 457, 548
BsmBI	CGTCTC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	160, 471
Bsp143I	GATC	2 cut(s)	616, 736
Bsp19I	CCATGG	2 cut(s)	379, 1033
BspACI	CCGC	2 cut(s)	591, 832
BspANI	GGCC	2 cut(s)	160, 471
BspCNI	CTCAG	2 cut(s)	114, 634
BspLI	GGNNCC	2 cut(s)	470, 1031
BspMAI	CTGCAG	2 cut(s)	412, 901
BspPI	GGATC	1 cut(s)	744
BspQI	GCTCTTC	2 cut(s)	111, 708
BspTI	CTTAAG	1 cut(s)	1064
BsrI	ACTGG	2 cut(s)	810, 940
BssECI	CCNNGG	3 cut(s)	379, 630, 1033
BssMI	GATC	2 cut(s)	616, 736
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	379, 1033
Bst2BI	CACGAG	1 cut(s)	480
Bst6I	CTCTTC	6 cut(s)	111, 537, 580, 708, 865, 879
BstAFI	CTTAAG	1 cut(s)	1064
BstC8I	GCNNGC	2 cut(s)	315, 339
BstDEI	CTNAG	2 cut(s)	101, 642
BstDSI	CCRYGG	2 cut(s)	379, 1033
BstF5I	GGATG	3 cut(s)	508, 806, 828
BstKTI	GATC	2 cut(s)	619, 739
BstMAI	GTCTC	3 cut(s)	44, 457, 548
BstMBI	GATC	2 cut(s)	616, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 840
BstNSI	RCATGY	1 cut(s)	317
BstSFI	CTRYAG	2 cut(s)	408, 897
BstV1I	GCAGC	2 cut(s)	204, 207
BsuRI	GGCC	2 cut(s)	160, 471
BtgI	CCRYGG	2 cut(s)	379, 1033
BtsCI	GGATG	3 cut(s)	508, 806, 828
BtsI	GCAGTG	2 cut(s)	894, 1005
BtsIMutI	CAGTG	4 cut(s)	817, 894, 933, 1005
Cac8I	GCNNGC	2 cut(s)	315, 339
CaiI	CAGNNNCTG	1 cut(s)	992
Cfr13I	GGNCC	2 cut(s)	159, 469
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	6 cut(s)	259, 314, 380, 443, 614, 1034
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	2 cut(s)	101, 642
DpnI	GATC	2 cut(s)	618, 738
DpnII	GATC	2 cut(s)	616, 736
DrdI	GACNNNNNNGTC	1 cut(s)	87
DseDI	GACNNNNNNGTC	1 cut(s)	87
Eam1104I	CTCTTC	6 cut(s)	111, 537, 580, 708, 865, 879
EarI	CTCTTC	6 cut(s)	111, 537, 580, 708, 865, 879
Eco130I	CCWWGG	2 cut(s)	379, 1033
Eco32I	GATATC	2 cut(s)	327, 420
Eco57I	CTGAAG	2 cut(s)	8, 585
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRV	GATATC	2 cut(s)	327, 420
EcoT14I	CCWWGG	2 cut(s)	379, 1033
ErhI	CCWWGG	2 cut(s)	379, 1033
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	6 cut(s)	262, 317, 383, 446, 617, 1037
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	6 cut(s)	258, 313, 379, 442, 613, 1033
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	2 cut(s)	180, 891
Fnu4HI	GCNGC	2 cut(s)	218, 221
FokI	GGATG	3 cut(s)	515, 793, 815
Fsp4HI	GCNGC	2 cut(s)	218, 221
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	2 cut(s)	218, 221
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	160, 471
Hin1II	CATG	6 cut(s)	262, 317, 383, 446, 617, 1037
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	2 cut(s)	5, 862
HinfI	GANTC	3 cut(s)	533, 638, 1079
HphI	GGTGA	5 cut(s)	242, 264, 605, 809, 950
Hpy166II	GTNNAC	4 cut(s)	181, 361, 607, 892
Hpy188I	TCNGA	4 cut(s)	324, 538, 631, 643
Hpy188III	TCNNGA	5 cut(s)	139, 189, 423, 620, 970
Hpy8I	GTNNAC	4 cut(s)	181, 361, 607, 892
HpyAV	CCTTC	3 cut(s)	504, 575, 871
HpyCH4V	TGCA	6 cut(s)	348, 410, 433, 776, 899, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 840
HpyF3I	CTNAG	2 cut(s)	101, 642
Hsp92II	CATG	6 cut(s)	262, 317, 383, 446, 617, 1037
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	616, 736
LguI	GCTCTTC	2 cut(s)	111, 708
LmnI	GCTCC	3 cut(s)	33, 784, 1029
LpnPI	CCDG	8 cut(s)	289, 299, 337, 341, 408, 823, 921, 978
Lsp1109I	GCAGC	2 cut(s)	204, 207
LweI	GCATC	4 cut(s)	357, 763, 979, 1047
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	618, 738
MboI	GATC	2 cut(s)	616, 736
MluCI	AATT	3 cut(s)	225, 244, 855
MmeI	TCCRAC	1 cut(s)	487
MseI	TTAA	2 cut(s)	254, 1065
MslI	CAYNNNNRTG	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	2 cut(s)	439, 840
NcoI	CCATGG	2 cut(s)	379, 1033
NdeII	GATC	2 cut(s)	616, 736
NlaIII	CATG	6 cut(s)	262, 317, 383, 446, 617, 1037
NlaIV	GGNNCC	2 cut(s)	470, 1031
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	317
PaeI	GCATGC	1 cut(s)	317
PciSI	GCTCTTC	2 cut(s)	111, 708
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	533, 638, 1079
PkrI	GCNGC	2 cut(s)	219, 222
PspFI	CCCAGC	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	470, 1031
PspPI	GGNCC	2 cut(s)	159, 469
PstI	CTGCAG	2 cut(s)	412, 901
PstNI	CAGNNNCTG	1 cut(s)	992
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	1 cut(s)	378
SapI	GCTCTTC	2 cut(s)	111, 708
SaqAI	TTAA	2 cut(s)	254, 1065
SatI	GCNGC	2 cut(s)	218, 221
Sau3AI	GATC	2 cut(s)	616, 736
Sau96I	GGNCC	2 cut(s)	159, 469
ScaI	AGTACT	1 cut(s)	450
SfaNI	GCATC	4 cut(s)	357, 763, 979, 1047
SfcI	CTRYAG	2 cut(s)	408, 897
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	3 cut(s)	139, 865, 1064
SmoI	CTYRAG	3 cut(s)	139, 865, 1064
SphI	GCATGC	1 cut(s)	317
Sse9I	AATT	3 cut(s)	225, 244, 855
SsiI	CCGC	2 cut(s)	591, 832
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	1 cut(s)	452
StyI	CCWWGG	2 cut(s)	379, 1033
TaqI	TCGA	2 cut(s)	497, 852
TasI	AATT	3 cut(s)	225, 244, 855
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	533, 638, 1079
Tru1I	TTAA	2 cut(s)	254, 1065
Tru9I	TTAA	2 cut(s)	254, 1065
TscAI	CASTG	4 cut(s)	817, 901, 940, 1012
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	217, 220
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	5 cut(s)	17, 163, 615, 681, 987
TspGWI	ACGGA	2 cut(s)	464, 692
TspRI	CASTG	4 cut(s)	817, 901, 940, 1012
Vha464I	CTTAAG	1 cut(s)	1064
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmiI	GTMKAC	2 cut(s)	180, 891
XspI	CTAG	1 cut(s)	452
ZrmI	AGTACT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.