Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Reverse (-)

35643842 .. 35644943

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCAGGAAAGATGCAGGACGGGAATGCAATAATAAAACTTGGGAGGCGCGACCTATATCCCCGAGTGGATGAAACTTCCTCGGATATAGGAAGGCAGAAGGAAAAAGAAGATTCTGAAGAAGAGATGGACGAGAGTAAATTGGATGAAATAGACGGACATGATTTGGAGAGAGCCGAGGAAGAGTCTGAGGGGGTCGAGGATTTAATTGATGAAGAAGATACGGAGAGGGAAGAGGAGAGTGAGGAACAAGAAAGTGATGAAGACAAGGGGGATGATGGGGAGAATCTCAAATTGTTAGATGATCGATCCCGGAGTGAAGATACAAGGAACACTGAAGAGATCAGAGAGGAACATTACAAGGCTGATGATGCGTCCGGTGCTGTGAAGCAGAACACCCAAACTTTAAGCACTGAAATTGAAATTGGAAGCTTGCGAAAAGTGAAGGAAGAAGAGGTATATAAGGCGGAAAAGATTGAAGTCGAGAGAGAAATTAAAACCAATGGTATCCTCGACTTTAAAGTTGTCGGGGCAGCTAAAAATGCCGTGCGTGGTGAAGAAAGTGAACTAAAACTGAGTAATGATTCAACGGGGACACTGGTTGAAACCGCTGACTCTCTCAATGGAACAGAGATGCTGCCAAAGTTATATCGCGATGCAAGTCAAGCTTCTGGCCAAAGGCACTTGGAAGCTTTTCTAAGCCCCAAATCCAAGGATCTGCAGTCAGGTTCCAATACGACTCTCTCTTTAACCGATAATTTAGATGCAAACAAGCGAGAAGTGGCAGCAACTGGTTCCGAAACTGAAAGTGTTGTTTCGGAAGCAACTGCCAAGCTCGCGAAAGGCTCTAATCCTAGAAGTACCAGTAAGAAAGATGATGAAGTAGGCAATGTGAAGTCTAATGCATATGGTAGGGTGGAGAGATCAGTGGGAAGCTTAATGGCACTGGAAACCAATGAAAATGTTGGTGCTGTACAAATTGAAGTAAATGAATCCCATTATTCGAATGCTGGAAACTTTAGCGGAGATCGTCAGACCTGGAGCAAACAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

38.87

Weight (kDa)

4.5

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	51, 654, 839
AciI	CCGC	3 cut(s)	467, 609, 1023
AclWI	GGATC	2 cut(s)	303, 723
AcoI	YGGCCR	1 cut(s)	673
AcuI	CTGAAG	2 cut(s)	138, 357
AfaI	GTAC	2 cut(s)	862, 975
AgsI	TTSAA	5 cut(s)	422, 479, 588, 605, 983
AjnI	CCWGG	1 cut(s)	1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	6 cut(s)	432, 536, 668, 692, 835, 936
AluI	AGCT	6 cut(s)	432, 536, 668, 692, 835, 936
AlwI	GGATC	2 cut(s)	303, 723
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	673
ApeKI	GCWGC	3 cut(s)	533, 637, 785
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	566
AsuII	TTCGAA	1 cut(s)	1004
AvaI	CYCGRG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	545, 624, 797
BccI	CCATC	2 cut(s)	121, 272
BceAI	ACGGC	1 cut(s)	530
BciT130I	CCWGG	1 cut(s)	1039
BciVI	GTATCC	1 cut(s)	518
BcnI	CCSGG	1 cut(s)	313
BfaI	CTAG	1 cut(s)	855
BfmI	CTRYAG	1 cut(s)	719
BfuI	GTATCC	1 cut(s)	518
BisI	GCNGC	3 cut(s)	534, 638, 786
BlsI	GCNGC	3 cut(s)	535, 639, 787
Bme1390I	CCNGG	2 cut(s)	313, 1039
BmeT110I	CYCGRG	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	730, 796
BmrFI	CCNGG	2 cut(s)	313, 1039
BmsI	GCATC	5 cut(s)	3, 361, 624, 646, 754
BpiI	GAAGAC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	1004
BpuMI	CCSGG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	307
BsaJI	CCNNGG	3 cut(s)	81, 177, 711
BsaWI	WCCGGW	1 cut(s)	377
Bse1I	ACTGG	4 cut(s)	603, 796, 864, 951
Bse3DI	GCAATG	1 cut(s)	895
BseBI	CCWGG	1 cut(s)	1039
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	3 cut(s)	81, 177, 711
BseGI	GGATG	3 cut(s)	76, 151, 280
BseMI	GCAATG	1 cut(s)	895
BseMII	CTCAG	2 cut(s)	180, 566
BseNI	ACTGG	4 cut(s)	603, 796, 864, 951
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	545, 624, 797
Bsh1236I	CGCG	3 cut(s)	51, 654, 839
BshFI	GGCC	1 cut(s)	675
BshVI	ATCGAT	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	313, 378
BslFI	GGGAC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	2 cut(s)	31, 1012
BsnI	GGCC	1 cut(s)	675
BsoBI	CYCGRG	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	1004
Bsp1407I	TGTACA	1 cut(s)	973
Bsp143I	GATC	6 cut(s)	304, 308, 342, 715, 923, 1027
Bsp68I	TCGCGA	2 cut(s)	654, 839
BspACI	CCGC	3 cut(s)	467, 609, 1023
BspANI	GGCC	1 cut(s)	675
BspCNI	CTCAG	2 cut(s)	181, 567
BspDI	ATCGAT	1 cut(s)	307
BspFNI	CGCG	3 cut(s)	51, 654, 839
BspLI	GGNNCC	2 cut(s)	730, 796
BspMAI	CTGCAG	1 cut(s)	723
BspPI	GGATC	2 cut(s)	303, 723
BspT104I	TTCGAA	1 cut(s)	1004
BsrDI	GCAATG	1 cut(s)	895
BsrGI	TGTACA	1 cut(s)	973
BsrI	ACTGG	4 cut(s)	603, 796, 864, 951
BssECI	CCNNGG	3 cut(s)	81, 177, 711
BssMI	GATC	6 cut(s)	304, 308, 342, 715, 923, 1027
BssT1I	CCWWGG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	1039
Bst6I	CTCTTC	5 cut(s)	117, 177, 228, 333, 447
BstAUI	TGTACA	1 cut(s)	973
BstBI	TTCGAA	1 cut(s)	1004
BstC8I	GCNNGC	2 cut(s)	434, 837
BstDEI	CTNAG	3 cut(s)	189, 575, 698
BstF5I	GGATG	3 cut(s)	76, 151, 280
BstFNI	CGCG	3 cut(s)	51, 654, 839
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	6 cut(s)	307, 311, 345, 718, 926, 1030
BstMBI	GATC	6 cut(s)	304, 308, 342, 715, 923, 1027
BstMWI	GCNNNNNNNGC	5 cut(s)	371, 380, 542, 665, 836
BstNI	CCWGG	1 cut(s)	1039
BstSCI	CCNGG	2 cut(s)	311, 1037
BstSFI	CTRYAG	1 cut(s)	719
BstUI	CGCG	3 cut(s)	51, 654, 839
BstV1I	GCAGC	3 cut(s)	545, 624, 797
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
Bsu15I	ATCGAT	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	675
BsuTUI	ATCGAT	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	76, 151, 280
BtsIMutI	CAGTG	5 cut(s)	333, 411, 596, 933, 944
BtuMI	TCGCGA	2 cut(s)	654, 839
Cac8I	GCNNGC	2 cut(s)	434, 837
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	307
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	861, 974
CviAII	CATG	1 cut(s)	161
CviQI	GTAC	2 cut(s)	861, 974
DdeI	CTNAG	3 cut(s)	189, 575, 698
DpnI	GATC	6 cut(s)	306, 310, 344, 717, 925, 1029
DpnII	GATC	6 cut(s)	304, 308, 342, 715, 923, 1027
DraI	TTTAAA	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	5 cut(s)	117, 177, 228, 333, 447
EarI	CTCTTC	5 cut(s)	117, 177, 228, 333, 447
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	711
Eco57I	CTGAAG	2 cut(s)	138, 357
Eco88I	CYCGRG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	1037
EcoT14I	CCWWGG	1 cut(s)	711
EcoT22I	ATGCAT	1 cut(s)	907
ErhI	CCWWGG	1 cut(s)	711
FaeI	CATG	1 cut(s)	164
FaiI	YATR	8 cut(s)	58, 89, 162, 460, 462, 649, 907, 909
FalI	AAGNNNNNCTT	2 cut(s)	652, 684
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	907
Fnu4HI	GCNGC	3 cut(s)	534, 638, 786
FokI	GGATG	3 cut(s)	83, 158, 287
Fsp4HI	GCNGC	3 cut(s)	534, 638, 786
FspBI	CTAG	1 cut(s)	855
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	3 cut(s)	534, 638, 786
HaeIII	GGCC	1 cut(s)	675
HapII	CCGG	2 cut(s)	313, 378
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	4 cut(s)	430, 666, 690, 934
HinfI	GANTC	7 cut(s)	113, 185, 286, 584, 614, 739, 992
HpaII	CCGG	2 cut(s)	313, 378
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188I	TCNGA	7 cut(s)	85, 118, 190, 347, 799, 820, 1035
Hpy188III	TCNNGA	4 cut(s)	6, 484, 653, 838
Hpy8I	GTNNAC	1 cut(s)	566
HpyAV	CCTTC	3 cut(s)	87, 94, 439
HpyCH4V	TGCA	6 cut(s)	16, 29, 659, 721, 767, 905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	371, 380, 542, 665, 836
HpyF3I	CTNAG	3 cut(s)	189, 575, 698
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	6 cut(s)	304, 308, 342, 715, 923, 1027
LmnI	GCTCC	1 cut(s)	1041
Lsp1109I	GCAGC	3 cut(s)	545, 624, 797
LweI	GCATC	5 cut(s)	3, 361, 624, 646, 754
MaeI	CTAG	1 cut(s)	855
MalI	GATC	6 cut(s)	306, 310, 344, 717, 925, 1029
MboI	GATC	6 cut(s)	304, 308, 342, 715, 923, 1027
MflI	RGATCY	1 cut(s)	715
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	8 cut(s)	140, 207, 293, 417, 423, 492, 757, 978
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	3 cut(s)	194, 608, 733
Mox20I	TGGCCA	1 cut(s)	675
Mph1103I	ATGCAT	1 cut(s)	907
MroXI	GAANNNNTTC	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	6 cut(s)	206, 407, 495, 519, 749, 938
Msp20I	TGGCCA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	2 cut(s)	313, 378
MspR9I	CCNGG	2 cut(s)	313, 1039
Mva1269I	GAATGC	2 cut(s)	31, 1012
MvaI	CCWGG	1 cut(s)	1039
MvnI	CGCG	3 cut(s)	51, 654, 839
MwoI	GCNNNNNNNGC	5 cut(s)	371, 380, 542, 665, 836
NciI	CCSGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	6 cut(s)	304, 308, 342, 715, 923, 1027
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	2 cut(s)	730, 796
NmeAIII	GCCGAG	1 cut(s)	202
NruI	TCGCGA	2 cut(s)	654, 839
NsiI	ATGCAT	1 cut(s)	907
NspV	TTCGAA	1 cut(s)	1004
PctI	GAATGC	2 cut(s)	31, 1012
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	4 cut(s)	113, 286, 584, 992
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	535, 639, 787
PleI	GAGTC	3 cut(s)	193, 608, 733
PpsI	GAGTC	3 cut(s)	193, 608, 733
Psp6I	CCWGG	1 cut(s)	1037
PspGI	CCWGG	1 cut(s)	1037
PspN4I	GGNNCC	2 cut(s)	730, 796
PstI	CTGCAG	1 cut(s)	723
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	715
RruI	TCGCGA	2 cut(s)	654, 839
RsaI	GTAC	2 cut(s)	862, 975
RsaNI	GTAC	2 cut(s)	861, 974
SaqAI	TTAA	6 cut(s)	206, 407, 495, 519, 749, 938
SatI	GCNGC	3 cut(s)	534, 638, 786
Sau3AI	GATC	6 cut(s)	304, 308, 342, 715, 923, 1027
SchI	GAGTC	3 cut(s)	194, 608, 733
ScrFI	CCNGG	2 cut(s)	313, 1039
SfaNI	GCATC	5 cut(s)	3, 361, 624, 646, 754
SfcI	CTRYAG	1 cut(s)	719
SfuI	TTCGAA	1 cut(s)	1004
Sse9I	AATT	8 cut(s)	140, 207, 293, 417, 423, 492, 757, 978
SsiI	CCGC	3 cut(s)	467, 609, 1023
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	311, 1037
StyI	CCWWGG	1 cut(s)	711
TaqI	TCGA	5 cut(s)	198, 307, 483, 513, 1004
TasI	AATT	8 cut(s)	140, 207, 293, 417, 423, 492, 757, 978
TatI	WGTACW	1 cut(s)	973
TfiI	GAWTC	4 cut(s)	113, 286, 584, 992
Tru1I	TTAA	6 cut(s)	206, 407, 495, 519, 749, 938
Tru9I	TTAA	6 cut(s)	206, 407, 495, 519, 749, 938
TscAI	CASTG	5 cut(s)	340, 418, 603, 933, 951
TseI	GCWGC	3 cut(s)	533, 637, 785
TspDTI	ATGAA	7 cut(s)	87, 162, 228, 276, 894, 972, 1005
TspGWI	ACGGA	2 cut(s)	171, 239
TspRI	CASTG	5 cut(s)	340, 418, 603, 933, 951
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	855
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.