Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Forward (+)

58389164 .. 58392610

Gene Structure 3447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG444600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTGCATAAGTGCATTGGTGAGATTCTGCAGTAGAAAATTTAGATGTAGTAGTATATTTATATGGTGGATCACTTATGGTTCCTACTTCCCTTTGTACAGATTGGCTCACAACTTGCTGCTGCTAATTGGTGAAGTTATATACAATTTCGTATTAACCATGTTGAAGCAATCACCCAGTAGAAACCAGAGGGTAAAAGGCTTCAAGGTAAAGCATGCTGTTCAGATATCTTTGTTGCTTGCTATTTGCATCTGGCTGGTTTACCAACTCAATCACTCCCATGGTAAAAAAGCACTTGAAGTCAGCTCTGCAGAGAAGAAATCAGGCGAGGTGCAAAATGAGCATGGAGTACTAGAACTTGGGAGACGGGGCCTCCGTCCTCGTGTGGAAGAAACTTCGATGGATGTTGGAAGGCATAGGGAAAAAGAGGAAGAATCAGAAGAAGAGGCAGATGAGACTAAAGCTGAAGAAAGTGAGGAGGAAGGAAGAGGCGGTGAAGATGAAGTTGACGGGCATGATCAAGAGAAATCCGACGAAGAATTTGAGGGGGTAGAGGATTTGATTGATGAAGATGATACGGAGAGAGAAGAAGAAAGTGAAGAACAAGAGAGTGAAGAGCAAGGAAATGATTTGGAGGATCAAGTTCAAAATAGAGATACAAGGTATAGCCAAGATGCAAGAGAGGAGCAATACAAGGGTGATGATGCATCCAGTGCTGTGAAGCAGAACATCCGCACTATAAGCAACCAAATCGAAATTGGAAGCTTGAGAAGAGTGAAGGAAGAAGAGGTAGACGCTGCAGAAAATATTGATTTAGAGAAAGATAATAAAGCCACTGGTGAAACAAAAGGTAATCAGTTTGGTTCAGTCAAGATAGATGGTCAAACAGATGCTGGTTCATCAACCACTACAAGTGAAAAACCAAAAAGAAGCAATGGTTCTCTTTATGGAACAGAGATGCTACTTAAGTTATATTATGATTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.5

Weight (kDa)

4.69

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	792
AciI	CCGC	2 cut(s)	492, 733
AclWI	GGATC	2 cut(s)	77, 645
AcsI	RAATTY	2 cut(s)	38, 539
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	2 cut(s)	98, 351
AflII	CTTAAG	1 cut(s)	965
AgsI	TTSAA	5 cut(s)	166, 205, 299, 647, 984
AluBI	AGCT	3 cut(s)	306, 464, 765
AluI	AGCT	3 cut(s)	306, 464, 765
Alw26I	GTCTC	2 cut(s)	358, 449
AlwI	GGATC	2 cut(s)	77, 645
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	118, 121, 797
ApoI	RAATTY	2 cut(s)	38, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	6 cut(s)	31, 143, 165, 506, 710, 851
BauI	CACGAG	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	105, 108, 784
BccI	CCATC	2 cut(s)	394, 872
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	358, 449
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	3 cut(s)	28, 309, 798
BfrI	CTTAAG	1 cut(s)	965
BisI	GCNGC	3 cut(s)	119, 122, 798
BlsI	GCNGC	3 cut(s)	120, 123, 799
BmcAI	AGTACT	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	82, 371
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	6 cut(s)	258, 664, 694, 716, 880, 948
BmuI	ACTGGG	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	787
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bse1I	ACTGG	3 cut(s)	177, 711, 841
Bse3DI	GCAATG	1 cut(s)	940
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	409, 707, 729
BseMI	GCAATG	1 cut(s)	940
BseNI	ACTGG	3 cut(s)	177, 711, 841
BseRI	GAGGAG	2 cut(s)	491, 698
BseXI	GCAGC	3 cut(s)	105, 108, 784
BshFI	GGCC	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	358, 449
BsmBI	CGTCTC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	69, 517, 637
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	2 cut(s)	492, 733
BspANI	GGCC	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	82, 371
BspMAI	CTGCAG	3 cut(s)	32, 313, 802
BspPI	GGATC	2 cut(s)	77, 645
BspQI	GCTCTTC	1 cut(s)	609
BspTI	CTTAAG	1 cut(s)	965
BsrDI	GCAATG	1 cut(s)	940
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	177, 711, 841
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	3 cut(s)	69, 517, 637
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	381
Bst6I	CTCTTC	5 cut(s)	438, 481, 609, 766, 780
BstAFI	CTTAAG	1 cut(s)	965
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	216, 240
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	3 cut(s)	409, 707, 729
BstKTI	GATC	3 cut(s)	72, 520, 640
BstMAI	GTCTC	2 cut(s)	358, 449
BstMBI	GATC	3 cut(s)	69, 517, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 713, 741
BstNSI	RCATGY	1 cut(s)	218
BstSFI	CTRYAG	3 cut(s)	28, 309, 798
BstV1I	GCAGC	3 cut(s)	105, 108, 784
BsuRI	GGCC	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	409, 707, 729
BtsIMutI	CAGTG	2 cut(s)	718, 834
Cac8I	GCNNGC	2 cut(s)	216, 240
CaiI	CAGNNNCTG	1 cut(s)	893
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	2 cut(s)	97, 350
CviAII	CATG	5 cut(s)	160, 215, 281, 344, 515
CviJI	RGCY	9 cut(s)	107, 201, 256, 306, 372, 464, 669, 765, 833
CviKI_1	RGCY	9 cut(s)	107, 201, 256, 306, 372, 464, 669, 765, 833
CviQI	GTAC	2 cut(s)	97, 350
DpnI	GATC	3 cut(s)	71, 519, 639
DpnII	GATC	3 cut(s)	69, 517, 637
Eam1104I	CTCTTC	5 cut(s)	438, 481, 609, 766, 780
EarI	CTCTTC	5 cut(s)	438, 481, 609, 766, 780
Eco130I	CCWWGG	1 cut(s)	280
Eco32I	GATATC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	5 cut(s)	163, 218, 284, 347, 518
FatI	CATG	5 cut(s)	159, 214, 280, 343, 514
FbaI	TGATCA	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	792
Fnu4HI	GCNGC	3 cut(s)	119, 122, 798
FokI	GGATG	3 cut(s)	416, 694, 716
Fsp4HI	GCNGC	3 cut(s)	119, 122, 798
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	3 cut(s)	119, 122, 798
HaeIII	GGCC	1 cut(s)	372
HgaI	GACGC	1 cut(s)	803
Hin1II	CATG	5 cut(s)	163, 218, 284, 347, 518
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	763
HinfI	GANTC	3 cut(s)	24, 434, 980
HphI	GGTGA	6 cut(s)	31, 143, 165, 506, 710, 851
Hpy166II	GTNNAC	3 cut(s)	262, 508, 793
Hpy188I	TCNGA	3 cut(s)	225, 439, 532
Hpy188III	TCNNGA	2 cut(s)	521, 871
Hpy8I	GTNNAC	3 cut(s)	262, 508, 793
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	405, 476, 772
HpyCH4V	TGCA	9 cut(s)	6, 14, 30, 249, 311, 334, 677, 707, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 713, 741
Hsp92II	CATG	5 cut(s)	163, 218, 284, 347, 518
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	69, 517, 637
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	685
LpnPI	CCDG	8 cut(s)	190, 200, 238, 242, 309, 724, 822, 879
Lsp1109I	GCAGC	3 cut(s)	105, 108, 784
LweI	GCATC	6 cut(s)	258, 664, 694, 716, 880, 948
MaeI	CTAG	1 cut(s)	353
MalI	GATC	3 cut(s)	71, 519, 639
MboI	GATC	3 cut(s)	69, 517, 637
MluCI	AATT	5 cut(s)	38, 126, 145, 539, 756
MmeI	TCCRAC	2 cut(s)	388, 555
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	2 cut(s)	155, 966
MslI	CAYNNNNRTG	1 cut(s)	279
MspCI	CTTAAG	1 cut(s)	965
MwoI	GCNNNNNNNGC	3 cut(s)	340, 713, 741
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	3 cut(s)	69, 517, 637
NlaIII	CATG	5 cut(s)	163, 218, 284, 347, 518
NlaIV	GGNNCC	2 cut(s)	82, 371
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	24, 434, 980
PkrI	GCNGC	3 cut(s)	120, 123, 799
PspN4I	GGNNCC	2 cut(s)	82, 371
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	3 cut(s)	32, 313, 802
PstNI	CAGNNNCTG	1 cut(s)	893
RsaI	GTAC	2 cut(s)	98, 351
RsaNI	GTAC	2 cut(s)	97, 350
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	609
SaqAI	TTAA	2 cut(s)	155, 966
SatI	GCNGC	3 cut(s)	119, 122, 798
Sau3AI	GATC	3 cut(s)	69, 517, 637
Sau96I	GGNCC	1 cut(s)	370
ScaI	AGTACT	1 cut(s)	351
SetI	ASST	8 cut(s)	210, 308, 333, 466, 665, 767, 792, 853
SfaNI	GCATC	6 cut(s)	258, 664, 694, 716, 880, 948
SfcI	CTRYAG	3 cut(s)	28, 309, 798
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	766, 965
SmoI	CTYRAG	2 cut(s)	766, 965
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	5 cut(s)	38, 126, 145, 539, 756
SsiI	CCGC	2 cut(s)	492, 733
SspI	AATATT	1 cut(s)	808
SspMI	CTAG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	280
TaqI	TCGA	2 cut(s)	398, 753
TasI	AATT	5 cut(s)	38, 126, 145, 539, 756
TatI	WGTACW	2 cut(s)	96, 349
TfiI	GAWTC	3 cut(s)	24, 434, 980
Tru1I	TTAA	2 cut(s)	155, 966
Tru9I	TTAA	2 cut(s)	155, 966
TscAI	CASTG	2 cut(s)	718, 841
TseI	GCWGC	3 cut(s)	118, 121, 797
TspDTI	ATGAA	3 cut(s)	516, 582, 888
TspGWI	ACGGA	2 cut(s)	365, 593
TspRI	CASTG	2 cut(s)	718, 841
Vha464I	CTTAAG	1 cut(s)	965
XapI	RAATTY	2 cut(s)	38, 539
XceI	RCATGY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	792
XspI	CTAG	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.