Rorug07G0269800

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001952
Physical Location & Seq
Forward (+)
25473757 .. 25476031
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0269800.1

Sequence Viewer

Length: 300 bp
ATGAAAGTGAATAGCTTTTACCCCACGTGGAAATCAAATGAGGAGTTTGAGGAGCATGCTGAGAAAGCAAAGACCCTTCCAGAGACGACAACCAATGAGAGCAAGCTCATCCTGTATGGGTTGTACAAGCAAGCCACTGTTGGAGATGTTAACACCGCCCGTCCCGGAATGTTCAATATGAGGGACAGAGCAAAGTGGGATGCATGGAAGGCTGTTGAAGGCAAATCCAAGGATGAAGCCATGGGCGATTATGTTACAAAGGTGAAGCAGTTGCTGGAAGAAGCAGGAGTTTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

99

Amino Acids

11.27

Weight (kDa)

5.86

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 14 - 88 2.9e-29 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AcvI CACGTG 1 cut(s) 27
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 2 cut(s) 175, 218
AluBI AGCT 2 cut(s) 15, 106
AluI AGCT 2 cut(s) 15, 106
Alw26I GTCTC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 274
BbrPI CACGTG 1 cut(s) 27
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 190
BpuMI CCSGG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 228, 240
BseDI CCNNGG 2 cut(s) 228, 240
BseGI GGATG 3 cut(s) 108, 205, 238
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 56, 65
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 2 cut(s) 147, 197
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 147, 197
Bsp1407I TGTACA 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 123
BssECI CCNNGG 2 cut(s) 228, 240
BssT1I CCWWGG 2 cut(s) 228, 240
Bst4CI ACNGT 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 57, 104, 132
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 108, 205, 238
BstMAI GTCTC 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 65, 209
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 3 cut(s) 108, 205, 238
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 57, 104, 132
CaiI CAGNNNCTG 1 cut(s) 274
Csp6I GTAC 1 cut(s) 124
CviAII CATG 3 cut(s) 56, 204, 241
CviJI RGCY 5 cut(s) 15, 106, 134, 212, 239
CviKI_1 RGCY 5 cut(s) 15, 106, 134, 212, 239
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 228, 240
Eco72I CACGTG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 228, 240
EcoT22I ATGCAT 1 cut(s) 205
ErhI CCWWGG 2 cut(s) 228, 240
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 3 cut(s) 59, 207, 244
FaiI YATR 6 cut(s) 57, 117, 179, 205, 242, 252
FaqI GGGAC 2 cut(s) 147, 197
FatI CATG 3 cut(s) 55, 203, 240
FokI GGATG 3 cut(s) 95, 212, 245
HapII CCGG 1 cut(s) 165
Hin1II CATG 3 cut(s) 59, 207, 244
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HpaI GTTAAC 1 cut(s) 151
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 86, 202, 212
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 209
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 3 cut(s) 59, 207, 244
KspAI GTTAAC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 93, 125, 178, 260, 270
LweI GCATC 1 cut(s) 190
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 3 cut(s) 34, 43, 174
Mph1103I ATGCAT 1 cut(s) 205
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 65, 209
NciI CCSGG 1 cut(s) 165
NcoI CCATGG 1 cut(s) 240
NlaIII CATG 3 cut(s) 59, 207, 244
NsiI ATGCAT 1 cut(s) 205
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 163
PmaCI CACGTG 1 cut(s) 27
PmlI CACGTG 1 cut(s) 27
Ppu21I YACGTR 1 cut(s) 27
PspCI CACGTG 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 274
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 165
SetI ASST 4 cut(s) 17, 29, 108, 264
SfaNI GCATC 1 cut(s) 190
SphI GCATGC 1 cut(s) 59
SsiI CCGC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 228, 240
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 29
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 17, 249
TspRI CASTG 1 cut(s) 142
XceI RCATGY 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.