Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Forward (+)

12734008 .. 12735171

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTTCAAGCTATCTCCTCGCAGGAGCTCGAGATCTAGAGGGCTGAAGGTCAAGCATGCACTGCAGCTGTTTCTTTTGCTGGGTGTGTGCGTCTGGCTGGCTTACCAAGTCAAGCAGTCTCATGGCAAAAAAGCGGAGTTCAGGGAAAAAATAAAGGATGGTGGGGATCAGATCCTCAAGTTAGGAAGAAAGGATCTCAAGCCTGTCGTGGAGGAAATTGTCGATAGGAATGCAGGGCAGAAGGAGGAGGAAGAAGAAGAACAAAACAAGCCTGAAGAGATCGATAATGTTGGAAGAGGCACTGGAGATGATGAAGTGAATGAAAATGGTGAGAACAAAATTGATGAGAGGACAAAAGATCAAGGTGATTCGGTAGAAGGTGAGAAAGAAATTGAAACGAACAAGGTGGTTACTAGTGAAGAGAGCAATGTGAATGAAAATGAAGAGAGTAAAGAGAACGAAAATGGAAACAGGAAGGATGAAGACGACAAAGCCAAGCAGAGTGAGGAAAGCAATGAGAGGGAGACCGAAGGGGCCAAAGAGAAAGAAAGTGAAGAAAAGGAGATTGTAGAGACTGTAGAGAAAGAGAACAGAGAGACCAAGGAGACGGAAAGTGAACAGAAGGAGAATGTAGAGGCTACAGAGAAAGAAAGTGAACAGAAGGAGAACGGAGAGTCCAAAGAGACAGAAAGTGAACCAAAGGAAAATGTAGAGAACAAAGAGCAAGAAAGTGAGCAGAAGGAGAACGGAGATACCAAGGAGATGGAAAGTGAACAGAAGGAGAATGTAGAGACTACAGAGAAAGAAAGTGAACAGAAGGAGAATGGAGAGTCCAAAGAGACAGAAAGTGAACCGAAGGAGAACGTAGAGAACAAAGAGCAAGAAAGTGAGCAGAAGGAGAACTACGAGACCAAAGAGAAAGAAAGTGAGCAGAAGGAGAACTACGAAACCAAAGAGAAAGAAACTGAACAGAAGGAGAATGAAGAGATCAAAGAGGACAAAACTGAAGAGAAAGGAACATCAGAGGAGACTCAAAGGGTGGATAATAAAGAGGGAGAGGAACGCAATGATACAGATGATAAAGAAAAGGAGGCCGAGGAGAAGGAAGGTGATAAGATTGAGAAGCTGCTTTTAACTGATCGATCGGGTTCGAGATGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

45.02

Weight (kDa)

4.55

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	3 cut(s)	166, 174, 201
AcuI	CTGAAG	3 cut(s)	65, 294, 1026
AgsI	TTSAA	2 cut(s)	7, 395
AhlI	ACTAGT	1 cut(s)	413
AloI	GAACNNNNNNTCC	2 cut(s)	659, 691
AluBI	AGCT	4 cut(s)	10, 27, 67, 1126
AluI	AGCT	4 cut(s)	10, 27, 67, 1126
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	3 cut(s)	166, 174, 201
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	534, 1092
ApeKI	GCWGC	2 cut(s)	64, 1126
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	4 cut(s)	341, 377, 392, 1121
AvaI	CYCGRG	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	4 cut(s)	887, 919, 926, 958
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	76, 1113
BccI	CCATC	3 cut(s)	152, 757, 1149
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	2 cut(s)	36, 414
BfmI	CTRYAG	4 cut(s)	62, 576, 639, 795
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	2 cut(s)	65, 1127
BlsI	GCNGC	2 cut(s)	66, 1128
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	161, 182
Bsa29I	ATCGAT	2 cut(s)	282, 1141
BsaI	GGTCTC	3 cut(s)	518, 590, 902
BsaJI	CCNNGG	3 cut(s)	600, 756, 1095
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	3 cut(s)	433, 520, 1072
BseCI	ATCGAT	2 cut(s)	282, 1141
BseDI	CCNNGG	3 cut(s)	600, 756, 1095
BseGI	GGATG	2 cut(s)	163, 484
BseMI	GCAATG	3 cut(s)	433, 520, 1072
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	4 cut(s)	6, 260, 1040, 1112
BseXI	GCAGC	2 cut(s)	76, 1113
BseYI	CCCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	1145
BshFI	GGCC	2 cut(s)	536, 1094
BshVI	ATCGAT	2 cut(s)	282, 1141
BsiEI	CGRYCG	1 cut(s)	1145
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	599
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	536, 1094
Bso31I	GGTCTC	3 cut(s)	518, 590, 902
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	9 cut(s)	32, 166, 171, 193, 279, 358, 987, 1138, 1142
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	2 cut(s)	536, 1094
BspDI	ATCGAT	2 cut(s)	282, 1141
BspLI	GGNNCC	1 cut(s)	535
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	3 cut(s)	166, 174, 201
BspTNI	GGTCTC	3 cut(s)	518, 590, 902
BsrDI	GCAATG	3 cut(s)	433, 520, 1072
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	3 cut(s)	600, 756, 1095
BssMI	GATC	9 cut(s)	32, 166, 171, 193, 279, 358, 987, 1138, 1142
BssT1I	CCWWGG	2 cut(s)	600, 756
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	6 cut(s)	270, 289, 414, 438, 978, 1002
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	57, 99
BstF5I	GGATG	2 cut(s)	163, 484
BstKTI	GATC	9 cut(s)	35, 169, 174, 196, 282, 361, 990, 1141, 1145
BstMBI	GATC	9 cut(s)	32, 166, 171, 193, 279, 358, 987, 1138, 1142
BstMCI	CGRYCG	1 cut(s)	1145
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	59
BstSFI	CTRYAG	4 cut(s)	62, 576, 639, 795
BstV1I	GCAGC	2 cut(s)	76, 1113
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	3 cut(s)	32, 171, 193
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	3 cut(s)	32, 171, 193
Bsu15I	ATCGAT	2 cut(s)	282, 1141
BsuRI	GGCC	2 cut(s)	536, 1094
BsuTUI	ATCGAT	2 cut(s)	282, 1141
BtsCI	GGATG	2 cut(s)	163, 484
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	59, 300
Cac8I	GCNNGC	2 cut(s)	57, 99
Cfr13I	GGNCC	1 cut(s)	534
ClaI	ATCGAT	2 cut(s)	282, 1141
CseI	GACGC	1 cut(s)	79
CviAII	CATG	2 cut(s)	56, 122
DpnI	GATC	9 cut(s)	34, 168, 173, 195, 281, 360, 989, 1140, 1144
DpnII	GATC	9 cut(s)	32, 166, 171, 193, 279, 358, 987, 1138, 1142
Eam1104I	CTCTTC	6 cut(s)	270, 289, 414, 438, 978, 1002
EarI	CTCTTC	6 cut(s)	270, 289, 414, 438, 978, 1002
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	600, 756
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	3 cut(s)	518, 590, 902
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	65, 294, 1026
Eco88I	CYCGRG	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	600, 756
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	2 cut(s)	600, 756
Esp3I	CGTCTC	1 cut(s)	599
FaeI	CATG	2 cut(s)	59, 125
FaiI	YATR	2 cut(s)	57, 123
FatI	CATG	2 cut(s)	55, 121
Fnu4HI	GCNGC	2 cut(s)	65, 1127
FokI	GGATG	2 cut(s)	170, 491
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	65, 1127
FspBI	CTAG	2 cut(s)	36, 414
GluI	GCNGC	2 cut(s)	65, 1127
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	536, 1094
HgaI	GACGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	59, 125
HinfI	GANTC	4 cut(s)	368, 674, 830, 1030
HphI	GGTGA	4 cut(s)	341, 377, 392, 1121
Hpy166II	GTNNAC	6 cut(s)	617, 656, 695, 773, 812, 851
Hpy188I	TCNGA	2 cut(s)	171, 1024
Hpy188III	TCNNGA	3 cut(s)	30, 36, 1152
Hpy8I	GTNNAC	6 cut(s)	617, 656, 695, 773, 812, 851
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	3 cut(s)	59, 64, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	2 cut(s)	59, 125
Kzo9I	GATC	9 cut(s)	32, 166, 171, 193, 279, 358, 987, 1138, 1142
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	2 cut(s)	76, 1113
MaeI	CTAG	2 cut(s)	36, 414
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	9 cut(s)	34, 168, 173, 195, 281, 360, 989, 1140, 1144
MboI	GATC	9 cut(s)	32, 166, 171, 193, 279, 358, 987, 1138, 1142
MflI	RGATCY	3 cut(s)	32, 171, 193
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	3 cut(s)	216, 339, 390
MlyI	GAGTC	3 cut(s)	683, 839, 1024
MmeI	TCCRAC	1 cut(s)	271
MseI	TTAA	1 cut(s)	1133
MspA1I	CMGCKG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	9 cut(s)	32, 166, 171, 193, 279, 358, 987, 1138, 1142
NlaIII	CATG	2 cut(s)	59, 125
NlaIV	GGNNCC	1 cut(s)	535
NmeAIII	GCCGAG	1 cut(s)	1120
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	28
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	66, 1128
Ple19I	CGATCG	1 cut(s)	1145
PleI	GAGTC	3 cut(s)	682, 838, 1024
PpsI	GAGTC	3 cut(s)	682, 838, 1024
Psp124BI	GAGCTC	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	66
PsuI	RGATCY	3 cut(s)	32, 171, 193
PvuI	CGATCG	1 cut(s)	1145
PvuII	CAGCTG	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	1133
SatI	GCNGC	2 cut(s)	65, 1127
Sau3AI	GATC	9 cut(s)	32, 166, 171, 193, 279, 358, 987, 1138, 1142
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	3 cut(s)	683, 839, 1024
SduI	GDGCHC	1 cut(s)	29
SfcI	CTRYAG	4 cut(s)	62, 576, 639, 795
Sfr274I	CTCGAG	1 cut(s)	28
SlaI	CTCGAG	1 cut(s)	28
SmlI	CTYRAG	3 cut(s)	28, 176, 197
SmoI	CTYRAG	3 cut(s)	28, 176, 197
SpeI	ACTAGT	1 cut(s)	413
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	3 cut(s)	216, 339, 390
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	2 cut(s)	36, 414
SstI	GAGCTC	1 cut(s)	29
StyI	CCWWGG	2 cut(s)	600, 756
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	5 cut(s)	29, 222, 282, 1141, 1151
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	3 cut(s)	216, 339, 390
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	1133
Tru9I	TTAA	1 cut(s)	1133
TscAI	CASTG	2 cut(s)	66, 307
TseI	GCWGC	2 cut(s)	64, 1126
TspDTI	ATGAA	6 cut(s)	327, 336, 450, 456, 495, 996
TspGWI	ACGGA	3 cut(s)	623, 684, 762
TspRI	CASTG	2 cut(s)	66, 307
XbaI	TCTAGA	1 cut(s)	35
XceI	RCATGY	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	28
XspI	CTAG	2 cut(s)	36, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.