Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Forward (+)

57015037 .. 57018483

Gene Structure 3447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG424300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTTGAAGCAATCACCCAGTAGAAACCAGAGGGTAAAAGGCTTCAAGGTAAAGCATGCTGTTCAGATATCTTTGTTGCTTGCTATTTGCATCTGGCTGGTTTACCAACTCAATCACTCCCATGGTAAAAAAGCACTTGAAGTCAGCTCTGCAGAGAAGAAATCAGGCGAGGTGCAAAATGAGCATGGAGTACTAGAACTTGGGAGACGGGGCCTCCGTCCTCGTGTGGAAGAAACTTCGATGGATGTTGGAAGGCATAGGGAAAAAGAGGAAGAATCAGAAGAAGAGGCAGATGAGACTAAAGCTGAAGAAAGTGAGGAGGAAGGAAGAGGCGGTGAAGATGAAGTTGACGGGCATGATCAAGAGAAATCCGACGAAGAATTTGAGGGGGTAGAGGATTTGATTGATGAAGATGATACGGAGAGAGAAGAAGAAAGTGAAGAACAAGAGAGTGAAGAGCAAGGAAATGATTTGGAGGATCAAGTTCAAAATAGAGATACAAGGTATAGCCAAGATGCAAGAGAGGAGCAATACAAGGGTGATGATGCATCCAGTGCTGTGAAGCAGAACATCCGCACTATAAGCAACCAAATCGAAATTGGAAGCTTGAGAAGAGTGAAGGAAGAAGAGGTAGACGCTGCAGAAAATATTGATTTAGAGAAAGATAATAAAGCCACTGGTGAAACAAAAGGTAATCAGTTTGGTTCAGTCAAGATAGATGGTCAAACAGATGCTGGTTCATCAACCACTACAAGTGAAAAACCAAAAAGAAGCAATGGTTCTCTTTATGGAACAGAGATGCTACTTAAGTTATATTATGATTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

31.18

Weight (kDa)

4.55

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	633
AciI	CCGC	2 cut(s)	333, 574
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	192
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	5 cut(s)	7, 46, 140, 488, 825
AluBI	AGCT	3 cut(s)	147, 305, 606
AluI	AGCT	3 cut(s)	147, 305, 606
Alw26I	GTCTC	2 cut(s)	199, 290
AlwI	GGATC	1 cut(s)	486
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	4 cut(s)	6, 347, 551, 692
BauI	CACGAG	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	2 cut(s)	235, 713
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	199, 290
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	2 cut(s)	150, 639
BfrI	CTTAAG	1 cut(s)	806
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
BmcAI	AGTACT	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	6 cut(s)	99, 505, 535, 557, 721, 789
BmuI	ACTGGG	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bse1I	ACTGG	3 cut(s)	18, 552, 682
Bse3DI	GCAATG	1 cut(s)	781
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	3 cut(s)	250, 548, 570
BseMI	GCAATG	1 cut(s)	781
BseNI	ACTGG	3 cut(s)	18, 552, 682
BseRI	GAGGAG	2 cut(s)	332, 539
BseXI	GCAGC	1 cut(s)	625
BshFI	GGCC	1 cut(s)	213
BsmAI	GTCTC	2 cut(s)	199, 290
BsmBI	CGTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	358, 478
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	2 cut(s)	333, 574
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	2 cut(s)	154, 643
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	450
BspTI	CTTAAG	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	781
BsrI	ACTGG	3 cut(s)	18, 552, 682
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	358, 478
BssSI	CACGAG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	222
Bst6I	CTCTTC	5 cut(s)	279, 322, 450, 607, 621
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	57, 81
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	3 cut(s)	250, 548, 570
BstKTI	GATC	2 cut(s)	361, 481
BstMAI	GTCTC	2 cut(s)	199, 290
BstMBI	GATC	2 cut(s)	358, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 554, 582
BstNSI	RCATGY	1 cut(s)	59
BstSFI	CTRYAG	2 cut(s)	150, 639
BstV1I	GCAGC	1 cut(s)	625
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	250, 548, 570
BtsIMutI	CAGTG	2 cut(s)	559, 675
Cac8I	GCNNGC	2 cut(s)	57, 81
CaiI	CAGNNNCTG	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	644
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	4 cut(s)	56, 122, 185, 356
CviJI	RGCY	8 cut(s)	42, 97, 147, 213, 305, 510, 606, 674
CviKI_1	RGCY	8 cut(s)	42, 97, 147, 213, 305, 510, 606, 674
CviQI	GTAC	1 cut(s)	191
DpnI	GATC	2 cut(s)	360, 480
DpnII	GATC	2 cut(s)	358, 478
Eam1104I	CTCTTC	5 cut(s)	279, 322, 450, 607, 621
EarI	CTCTTC	5 cut(s)	279, 322, 450, 607, 621
Eco130I	CCWWGG	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	4 cut(s)	59, 125, 188, 359
FatI	CATG	4 cut(s)	55, 121, 184, 355
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	3 cut(s)	257, 535, 557
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	639
HaeIII	GGCC	1 cut(s)	213
HgaI	GACGC	1 cut(s)	644
Hin1II	CATG	4 cut(s)	59, 125, 188, 359
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	604
HinfI	GANTC	2 cut(s)	275, 821
HphI	GGTGA	4 cut(s)	6, 347, 551, 692
Hpy166II	GTNNAC	3 cut(s)	103, 349, 634
Hpy188I	TCNGA	3 cut(s)	66, 280, 373
Hpy188III	TCNNGA	2 cut(s)	362, 712
Hpy8I	GTNNAC	3 cut(s)	103, 349, 634
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	246, 317, 613
HpyCH4V	TGCA	6 cut(s)	90, 152, 175, 518, 548, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 554, 582
Hsp92II	CATG	4 cut(s)	59, 125, 188, 359
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	358, 478
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	8 cut(s)	31, 41, 79, 83, 150, 565, 663, 720
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	6 cut(s)	99, 505, 535, 557, 721, 789
MaeI	CTAG	1 cut(s)	194
MalI	GATC	2 cut(s)	360, 480
MboI	GATC	2 cut(s)	358, 478
MluCI	AATT	2 cut(s)	380, 597
MmeI	TCCRAC	2 cut(s)	229, 396
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	1 cut(s)	807
MslI	CAYNNNNRTG	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	806
MwoI	GCNNNNNNNGC	3 cut(s)	181, 554, 582
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	358, 478
NlaIII	CATG	4 cut(s)	59, 125, 188, 359
NlaIV	GGNNCC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	275, 821
PkrI	GCNGC	1 cut(s)	640
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	2 cut(s)	154, 643
PstNI	CAGNNNCTG	1 cut(s)	734
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	2 cut(s)	358, 478
Sau96I	GGNCC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	192
SetI	ASST	8 cut(s)	51, 149, 174, 307, 506, 608, 633, 694
SfaNI	GCATC	6 cut(s)	99, 505, 535, 557, 721, 789
SfcI	CTRYAG	2 cut(s)	150, 639
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	607, 806
SmoI	CTYRAG	2 cut(s)	607, 806
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	2 cut(s)	380, 597
SsiI	CCGC	2 cut(s)	333, 574
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	121
TaqI	TCGA	2 cut(s)	239, 594
TasI	AATT	2 cut(s)	380, 597
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	275, 821
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	2 cut(s)	559, 682
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	3 cut(s)	357, 423, 729
TspGWI	ACGGA	2 cut(s)	206, 434
TspRI	CASTG	2 cut(s)	559, 682
Vha464I	CTTAAG	1 cut(s)	806
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.