Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001952

Physical Location & Seq

Genomic Coordinates Reverse (-)

49492484 .. 49494923

Gene Structure 2440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1395300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGTTGAAGCAATCGCCGAGTAGGAACCAGAGGTCAAAAGGCTTCAAGGTGAAGCATGCCGTACAGATATCTCTGTTGCTTGCCATCTGCATCTGGTTGCTTTACCAACTCAAGCACTCCCATGACAAGAAAGCGTATGAAGAGAGCTCTGGAACGATATCAGGAAAGATGCAGAAGGGGGATGCAATAATAAAACTTGGGAGGCGCGACCTATATCCCCGAGTGGATGAAACTTCCTTGGATAATGGAAGGCACAAGGAAAAAGAAGATTCTGAAGAAGAGATGGACGAGAGTAAATCGGATGAAATAGACGGGCATGATTTGGAGAGAGCCGAGGAAGAGTCTGAGGCGGTCGAGGATTTAATTGATGAAGAAGATACGGAGAGGGAAGAGGAGAGTGAGGAACAAGAAAGTGATGAAGAGATTCTCAAATTGTTAGATGATCAATCCCGGAGCGAAGATACAAGGAACACTGAAGAGATGAGAGAGGAACATTACAAGGCTGATGATGCGTCCGGTGCTGTGAAGCAGAACATCCAAACTTTAAGCACTGAAATTGAAATTGGAAGCTTGCGAAAAGTGAAGGAAGAAGAGGTAGAAAATGCGGAAAAGATTGAAGTCGAGAGAGAGATTAAAACCAATGGTATCCTCGGCTTTATAGTTGGCGGGGCAGCTAAAAATGCTGTGCAGAGTGAAGAAAGTGGTAAAACATATTCATCAATCAAAACAGTTGAAGAACTAAAACTGAGTAATGATTCTCTTAATGGAACAGAGATGTTACCAAAGTTATATCGCGATGCAAGTCGAGCTTCTGGCCAAGGGCACTTGTACCTGGAAGCTTTTCTAAGCCCCAAATCCAAGGATCTGCAGTCAGGTTCCAATACGACTCTCTCTTTAACCGATGATTTAGATGCAACCAAGCGAGAAGTGGCAGCAACTGGTTCCGAAACTGAAAGTGTTGTATCGGAAGCAACTGCCAAGCTCGCGAAAAGCTCTAATCCTAGAAGTACCAGTAAGAAAGATGATGAAGTTGGCAATGTGCAGTCTAATGCATACGGTAGGGTGGAGAGATCAGTGGGAAGCTTAATGGCACTGGAAACCAATGAAAATGTTGGTGCTGTACGAATGAAGTTAATGAATCCCATTCCTCGAATACTGGAAACTTTAGCGGAGATCGTCAGACCTGGAGCAAACAACATTGAAGGTGCAGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

406

Amino Acids

44.97

Weight (kDa)

4.74

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22795 AT2G22795 AT2G22795 AT4G37820 AT4G37820
fragaria_vesca	FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_1g18591 FvH4_5g33410 FvH4_5g33410
malus_domestica	MD02G1193800.v1.1 MD15G1395300.v1.1
prunus_persica	Prupe.1G544100_v2.0.a1 Prupe.1G544100_v2.0.a1 Prupe.6G213200_v2.0.a1 Prupe.6G213200_v2.0.a1
pyrus_communis	pycom02g15770 pycom02g15780 pycom15g26690 pycom15g35590
rosa_chinensis	RchiOBHm_Chr2g0109401 RchiOBHm_Chr7g0232141
rosa_laevigata	RLG00000001388 RLG00000017734
rosa_multiflora	Rmu_sc0000332.1_g000012 Rmu_sc0000616.1_g000014 Rmu_sc0026699.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134270 Rroxscaffold_3G00228750
rosa_rugosa	Rorug02G0159600 Rorug02G0159700 Rorug07G0269800
rosa_samantha	Rh2AG211700 Rh2BG222100 Rh2CG213800 Rh2DG217300 Rh7AG424300 Rh7BG398400 Rh7CG444600 Rh7DG416300
rosa_wichuraiana	Rw7G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	207, 795, 986
AciI	CCGC	4 cut(s)	350, 605, 666, 1169
AclWI	GGATC	1 cut(s)	870
AcoI	YGGCCR	1 cut(s)	814
AcuI	CTGAAG	2 cut(s)	294, 495
AfaI	GTAC	4 cut(s)	63, 830, 1009, 1122
AgsI	TTSAA	6 cut(s)	7, 46, 560, 617, 734, 1202
AjnI	CCWGG	2 cut(s)	831, 1183
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	9 cut(s)	147, 570, 674, 809, 839, 982, 993, 1083, 1211
AluI	AGCT	9 cut(s)	147, 570, 674, 809, 839, 982, 993, 1083, 1211
Alw21I	GWGCWC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	870
AlwNI	CAGNNNCTG	1 cut(s)	938
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	3 cut(s)	671, 932, 1208
Asp700I	GAANNNNTTC	2 cut(s)	423, 840
AspLEI	GCGC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	825
BalI	TGGCCA	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	683, 944
BccI	CCATC	2 cut(s)	92, 277
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	833, 1185
BciVI	GTATCC	1 cut(s)	656
BclI	TGATCA	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	451
BfaI	CTAG	1 cut(s)	1002
BfmI	CTRYAG	1 cut(s)	866
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	3 cut(s)	672, 933, 1209
BlsI	GCNGC	3 cut(s)	673, 934, 1210
Bme1390I	CCNGG	3 cut(s)	451, 833, 1185
BmeT110I	CYCGRG	1 cut(s)	219
BmiI	GGNNCC	3 cut(s)	26, 877, 943
BmrFI	CCNGG	3 cut(s)	451, 833, 1185
BmsI	GCATC	6 cut(s)	99, 159, 172, 499, 787, 901
BpmI	CTGGAG	1 cut(s)	1206
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	451
BsaJI	CCNNGG	5 cut(s)	237, 333, 649, 817, 858
BsaWI	WCCGGW	1 cut(s)	515
Bse1I	ACTGG	4 cut(s)	943, 1011, 1098, 1161
Bse3DI	GCAATG	1 cut(s)	1042
BseBI	CCWGG	2 cut(s)	833, 1185
BseDI	CCNNGG	5 cut(s)	237, 333, 649, 817, 858
BseGI	GGATG	4 cut(s)	187, 232, 307, 534
BseMI	GCAATG	1 cut(s)	1042
BseMII	CTCAG	3 cut(s)	336, 737, 1203
BseNI	ACTGG	4 cut(s)	943, 1011, 1098, 1161
BseRI	GAGGAG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	2 cut(s)	683, 944
BsgI	GTGCAG	2 cut(s)	707, 1061
Bsh1236I	CGCG	3 cut(s)	207, 795, 986
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	451, 516
BsnI	GGCC	1 cut(s)	816
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	149, 825
Bsp143I	GATC	4 cut(s)	442, 862, 1070, 1173
Bsp68I	TCGCGA	2 cut(s)	795, 986
BspACI	CCGC	4 cut(s)	350, 605, 666, 1169
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	3 cut(s)	337, 738, 1204
BspFNI	CGCG	3 cut(s)	207, 795, 986
BspLI	GGNNCC	3 cut(s)	26, 877, 943
BspMAI	CTGCAG	1 cut(s)	870
BspPI	GGATC	1 cut(s)	870
BsrDI	GCAATG	1 cut(s)	1042
BsrI	ACTGG	4 cut(s)	943, 1011, 1098, 1161
BssECI	CCNNGG	5 cut(s)	237, 333, 649, 817, 858
BssMI	GATC	4 cut(s)	442, 862, 1070, 1173
BssT1I	CCWWGG	3 cut(s)	237, 817, 858
Bst2UI	CCWGG	2 cut(s)	833, 1185
Bst4CI	ACNGT	2 cut(s)	730, 1058
Bst6I	CTCTTC	7 cut(s)	135, 273, 333, 384, 414, 471, 585
BstC8I	GCNNGC	4 cut(s)	57, 81, 572, 984
BstDEI	CTNAG	4 cut(s)	345, 746, 845, 1212
BstF5I	GGATG	4 cut(s)	187, 232, 307, 534
BstFNI	CGCG	3 cut(s)	207, 795, 986
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	4 cut(s)	445, 865, 1073, 1176
BstMBI	GATC	4 cut(s)	442, 862, 1070, 1173
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	5 cut(s)	509, 518, 680, 806, 983
BstNI	CCWGG	2 cut(s)	833, 1185
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	449, 831, 1183
BstSFI	CTRYAG	1 cut(s)	866
BstSLI	GKGCMC	1 cut(s)	825
BstUI	CGCG	3 cut(s)	207, 795, 986
BstV1I	GCAGC	2 cut(s)	683, 944
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	816
BtgZI	GCGATG	1 cut(s)	810
BtsCI	GGATG	4 cut(s)	187, 232, 307, 534
BtsIMutI	CAGTG	4 cut(s)	471, 549, 1080, 1091
BtuMI	TCGCGA	2 cut(s)	795, 986
Cac8I	GCNNGC	4 cut(s)	57, 81, 572, 984
CaiI	CAGNNNCTG	1 cut(s)	938
CfoI	GCGC	1 cut(s)	207
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	4 cut(s)	62, 829, 1008, 1121
CviAII	CATG	3 cut(s)	56, 122, 317
CviQI	GTAC	4 cut(s)	62, 829, 1008, 1121
DdeI	CTNAG	4 cut(s)	345, 746, 845, 1212
DpnI	GATC	4 cut(s)	444, 864, 1072, 1175
DpnII	GATC	4 cut(s)	442, 862, 1070, 1173
EaeI	YGGCCR	1 cut(s)	814
Eam1104I	CTCTTC	7 cut(s)	135, 273, 333, 384, 414, 471, 585
EarI	CTCTTC	7 cut(s)	135, 273, 333, 384, 414, 471, 585
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	237, 817, 858
Eco24I	GRGCYC	1 cut(s)	149
Eco32I	GATATC	2 cut(s)	69, 159
Eco53kI	GAGCTC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	294, 495
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	831, 1183
EcoRV	GATATC	2 cut(s)	69, 159
EcoT14I	CCWWGG	3 cut(s)	237, 817, 858
EcoT22I	ATGCAT	1 cut(s)	1054
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	3 cut(s)	237, 817, 858
FaeI	CATG	3 cut(s)	59, 125, 320
FaiI	YATR	9 cut(s)	57, 123, 138, 214, 318, 659, 712, 790, 1054
FalI	AAGNNNNNCTT	2 cut(s)	793, 825
FatI	CATG	3 cut(s)	55, 121, 316
FauI	CCCGC	1 cut(s)	659
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	3 cut(s)	672, 933, 1209
FokI	GGATG	4 cut(s)	194, 239, 314, 521
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	672, 933, 1209
FspBI	CTAG	1 cut(s)	1002
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	3 cut(s)	672, 933, 1209
GsuI	CTGGAG	1 cut(s)	1206
HaeIII	GGCC	1 cut(s)	816
HapII	CCGG	2 cut(s)	451, 516
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	59, 125, 320
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HindIII	AAGCTT	3 cut(s)	568, 837, 1081
HinfI	GANTC	6 cut(s)	269, 341, 424, 755, 886, 1138
HpaII	CCGG	2 cut(s)	451, 516
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	6 cut(s)	274, 301, 346, 946, 967, 1181
Hpy188III	TCNNGA	5 cut(s)	150, 162, 622, 794, 985
HpyAV	CCTTC	4 cut(s)	169, 243, 577, 1196
HpyCH4III	ACNGT	2 cut(s)	730, 1058
HpyF10VI	GCNNNNNNNGC	5 cut(s)	509, 518, 680, 806, 983
HpyF3I	CTNAG	4 cut(s)	345, 746, 845, 1212
Hsp92II	CATG	3 cut(s)	59, 125, 320
HspAI	GCGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	442, 862, 1070, 1173
LmnI	GCTCC	2 cut(s)	453, 1187
Lsp1109I	GCAGC	2 cut(s)	683, 944
LweI	GCATC	6 cut(s)	99, 159, 172, 499, 787, 901
MaeI	CTAG	1 cut(s)	1002
MaeIII	GTNAC	1 cut(s)	777
MalI	GATC	4 cut(s)	444, 864, 1072, 1175
MboI	GATC	4 cut(s)	442, 862, 1070, 1173
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	2 cut(s)	149, 825
MlsI	TGGCCA	1 cut(s)	816
MluCI	AATT	4 cut(s)	363, 431, 555, 561
MluNI	TGGCCA	1 cut(s)	816
MlyI	GAGTC	2 cut(s)	350, 880
Mox20I	TGGCCA	1 cut(s)	816
Mph1103I	ATGCAT	1 cut(s)	1054
MroXI	GAANNNNTTC	2 cut(s)	423, 840
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	7 cut(s)	362, 545, 633, 762, 896, 1085, 1133
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	1211
MspI	CCGG	2 cut(s)	451, 516
MspR9I	CCNGG	3 cut(s)	451, 833, 1185
MvaI	CCWGG	2 cut(s)	833, 1185
MvnI	CGCG	3 cut(s)	207, 795, 986
MwoI	GCNNNNNNNGC	5 cut(s)	509, 518, 680, 806, 983
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	4 cut(s)	442, 862, 1070, 1173
NlaIII	CATG	3 cut(s)	59, 125, 320
NlaIV	GGNNCC	3 cut(s)	26, 877, 943
NmeAIII	GCCGAG	3 cut(s)	42, 358, 630
NruI	TCGCGA	2 cut(s)	795, 986
NsiI	ATGCAT	1 cut(s)	1054
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PdmI	GAANNNNTTC	2 cut(s)	423, 840
PfeI	GAWTC	4 cut(s)	269, 424, 755, 1138
PfoI	TCCNGGA	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	673, 934, 1210
PleI	GAGTC	2 cut(s)	349, 880
PpsI	GAGTC	2 cut(s)	349, 880
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	831, 1183
PspGI	CCWGG	2 cut(s)	831, 1183
PspN4I	GGNNCC	3 cut(s)	26, 877, 943
PstI	CTGCAG	1 cut(s)	870
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	1211
RruI	TCGCGA	2 cut(s)	795, 986
RsaI	GTAC	4 cut(s)	63, 830, 1009, 1122
RsaNI	GTAC	4 cut(s)	62, 829, 1008, 1121
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	7 cut(s)	362, 545, 633, 762, 896, 1085, 1133
SatI	GCNGC	3 cut(s)	672, 933, 1209
Sau3AI	GATC	4 cut(s)	442, 862, 1070, 1173
SchI	GAGTC	2 cut(s)	350, 880
ScrFI	CCNGG	3 cut(s)	451, 833, 1185
SduI	GDGCHC	2 cut(s)	149, 825
SfaNI	GCATC	6 cut(s)	99, 159, 172, 499, 787, 901
SfcI	CTRYAG	1 cut(s)	866
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	4 cut(s)	363, 431, 555, 561
SsiI	CCGC	4 cut(s)	350, 605, 666, 1169
SspMI	CTAG	1 cut(s)	1002
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	3 cut(s)	449, 831, 1183
StyI	CCWWGG	3 cut(s)	237, 817, 858
TaaI	ACNGT	2 cut(s)	730, 1058
TaqI	TCGA	4 cut(s)	354, 621, 805, 1150
TasI	AATT	4 cut(s)	363, 431, 555, 561
TfiI	GAWTC	4 cut(s)	269, 424, 755, 1138
Tru1I	TTAA	7 cut(s)	362, 545, 633, 762, 896, 1085, 1133
Tru9I	TTAA	7 cut(s)	362, 545, 633, 762, 896, 1085, 1133
TscAI	CASTG	4 cut(s)	478, 556, 1080, 1098
TseI	GCWGC	3 cut(s)	671, 932, 1208
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	4 cut(s)	478, 556, 1080, 1098
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XmnI	GAANNNNTTC	2 cut(s)	423, 840
XspI	CTAG	1 cut(s)	1002
Zsp2I	ATGCAT	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.