Rh7BG398400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001952
Physical Location & Seq
Forward (+)
44157015 .. 44160510
3496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG398400.1

Sequence Viewer

Length: 594 bp
ATGGATGTTGGAAGGCATAGGGAAAAAGAGGAAGAATCAGAAGAAGAGGCAGATGAGACTAAAGCTGAAGAAAGTGAGGAGGAAGGAAGAGGCGGTGAAGATGAAGTTGACGGGCATGATCAAGAGAAATCCGAGGAAGAATCTGAGGGGGTAGAGGATTTGATTGATGAAGATGATACGGAGAGAGAAGAAGAAAGTGAAGAACAAGAGAGTGAAGAGCAAGGAAATGATTTGGAGAATCAAGTTCAAAATAGAGATACAAGGTATAGCCAAGATGCAAGAGAGGAGCAATACAAGGGTGATGATGCATCCAGTGCTGTGAAGCAGAACATCCGCACTATAAGCAACCAAATCGAAATTGGAAGCTTGAGAAGAGTGAAGGAAGAAGAGGTAGACACTGCAGAAAATATTGATTTAGAGAAAGATAATAATAAAGCCACTGGTGAAACAAAAGGTAATCAGTTTGGTTCAGTCAAGATAGATGGTCAAACAGATGCTGGTTCATCAACCACTACAAGTGCAAAACCAAAAAGGAGCAATGGTTCTCTTTATGGAACAGAGTTGCTACTTAAGTTATATTATGATTCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.19

Weight (kDa)

4.18

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AciI CCGC 2 cut(s) 93, 334
AcuI CTGAAG 1 cut(s) 87
AflII CTTAAG 1 cut(s) 569
AgsI TTSAA 2 cut(s) 248, 588
AloI GAACNNNNNNTCC 2 cut(s) 526, 558
AluBI AGCT 2 cut(s) 65, 366
AluI AGCT 2 cut(s) 65, 366
Alw26I GTCTC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 497
AsuHPI GGTGA 3 cut(s) 107, 311, 455
BccI CCATC 1 cut(s) 476
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 399
BfrI CTTAAG 1 cut(s) 569
BmsI GCATC 4 cut(s) 265, 295, 317, 484
BpuEI CTTGAG 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bse1I ACTGG 2 cut(s) 312, 445
Bse3DI GCAATG 1 cut(s) 544
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 10, 308, 330
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 312, 445
BseRI GAGGAG 2 cut(s) 92, 299
BsmAI GTCTC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 2 cut(s) 93, 334
BspCNI CTCAG 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 210
BspTI CTTAAG 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 2 cut(s) 312, 445
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 118
Bst6I CTCTTC 5 cut(s) 39, 82, 210, 367, 381
BstAFI CTTAAG 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 10, 308, 330
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 314, 342
BstSFI CTRYAG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 10, 308, 330
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 3 cut(s) 319, 396, 438
CaiI CAGNNNCTG 1 cut(s) 497
CviAII CATG 1 cut(s) 116
CviJI RGCY 4 cut(s) 65, 270, 366, 437
CviKI_1 RGCY 4 cut(s) 65, 270, 366, 437
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 5 cut(s) 39, 82, 210, 367, 381
EarI CTCTTC 5 cut(s) 39, 82, 210, 367, 381
Eco57I CTGAAG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 310
FaeI CATG 1 cut(s) 119
FaiI YATR 7 cut(s) 18, 117, 267, 341, 552, 577, 582
FatI CATG 1 cut(s) 115
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 393
FokI GGATG 3 cut(s) 17, 295, 317
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 4 cut(s) 35, 140, 238, 584
HphI GGTGA 3 cut(s) 107, 311, 455
Hpy166II GTNNAC 2 cut(s) 109, 394
Hpy188I TCNGA 3 cut(s) 40, 133, 145
Hpy188III TCNNGA 2 cut(s) 122, 475
Hpy8I GTNNAC 2 cut(s) 109, 394
HpyAV CCTTC 3 cut(s) 6, 77, 373
HpyCH4V TGCA 4 cut(s) 278, 308, 401, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 342
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 1 cut(s) 118
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 2 cut(s) 286, 534
LpnPI CCDG 3 cut(s) 325, 426, 483
LweI GCATC 4 cut(s) 265, 295, 317, 484
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MluCI AATT 1 cut(s) 357
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 1 cut(s) 570
MspCI CTTAAG 1 cut(s) 569
MwoI GCNNNNNNNGC 2 cut(s) 314, 342
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 4 cut(s) 35, 140, 238, 584
PstI CTGCAG 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 497
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 570
Sau3AI GATC 1 cut(s) 118
SetI ASST 5 cut(s) 67, 266, 368, 393, 457
SfaNI GCATC 4 cut(s) 265, 295, 317, 484
SfcI CTRYAG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 367, 569
SmoI CTYRAG 2 cut(s) 367, 569
Sse9I AATT 1 cut(s) 357
SsiI CCGC 2 cut(s) 93, 334
SspI AATATT 1 cut(s) 409
TaqI TCGA 1 cut(s) 354
TasI AATT 1 cut(s) 357
TfiI GAWTC 4 cut(s) 35, 140, 238, 584
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 3 cut(s) 319, 403, 445
TspDTI ATGAA 3 cut(s) 117, 183, 492
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 3 cut(s) 319, 403, 445
Vha464I CTTAAG 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.