Rroxscaffold_3G00228750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001952
Physical Location & Seq
Reverse (-)
13171245 .. 13172075
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228750.1

Sequence Viewer

Length: 831 bp
ATGTTGAAGCAATCACCCAGTAGAAACCAGAGGGTAAAAGGCTTCAAGGTAAAGCATGCTGTTCAGATATCTTTGTTGCTTGCTATTTGCATCTGGCTGGTTTACCAACTCAATCACTCCCATGGTAAAAAAGCACTTGAAGTCAGCTCTGCAGAGAAGATATCAGGCGAGGTGCAAAATGAGCATGGAGTACTAGAACTTGGGAGACGGGGCCTCCGTCCTCGTGTGGAAGAAACTTCGATGGATGTTGGAAGGCATAGGGAAAAAGAGGAAGAATCAGAAGAAGAGGCAGATGAGACTAAAGCTGAAGAAAGTGAGGAGGAAGGAAGAGGCGGTGAAGATGAAGTGGACGGGCATGATCAAGAGAAATCCGAGGAAGAATCTGAGGGGGTAGAGGATTTGATTGATGAAGATGATACGGAGAGAGAAGAAGAAAGTGAAGAACAAGAGAATGAAGAGCAAGGAAATGATTTGGAGGATCAAGTTCAAAATAGAGATACAAGGTATAGCCAAGATGCAAGAGAGGAGCAATACAAGGGTGATGATGCATCCAGTGCTGTGAAGCAGAACATCCGCACTATAAGCAACCAAATTGAAATTGGAAGCTTGAGAAGAGTGAAGGAAGAAGAGGTAGACACTGCAGAAAATATTGATTTAGAGAAAGATAATAAGGCCACTGGTGAAACAAAAGGTAATCAGTTTGGTTCAGTCAAGATAGATGGTCAAACAGATGCTGGTTCATCAACCACTACAAGTGAAAAACCAAAAAGGAGCAATGGTTCTCTTTATGGAACAGAGATGCTACTTAAGTTATATTATGATTCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.18

Weight (kDa)

4.53

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 633
AciI CCGC 2 cut(s) 333, 574
AclWI GGATC 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 192
AflII CTTAAG 1 cut(s) 806
AgsI TTSAA 6 cut(s) 7, 46, 140, 488, 596, 825
AloI GAACNNNNNNTCC 2 cut(s) 763, 795
AluBI AGCT 3 cut(s) 147, 305, 606
AluI AGCT 3 cut(s) 147, 305, 606
Alw26I GTCTC 2 cut(s) 199, 290
AlwI GGATC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 734
AoxI GGCC 2 cut(s) 211, 672
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 4 cut(s) 6, 347, 551, 692
BauI CACGAG 1 cut(s) 222
BccI CCATC 2 cut(s) 235, 713
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 199, 290
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 2 cut(s) 150, 639
BfrI CTTAAG 1 cut(s) 806
BmcAI AGTACT 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 12
BmsI GCATC 6 cut(s) 99, 505, 535, 557, 721, 789
BmuI ACTGGG 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 628
BsaJI CCNNGG 2 cut(s) 121, 372
BsaXI ACNNNNNCTCC 4 cut(s) 198, 228, 763, 793
Bse1I ACTGG 3 cut(s) 18, 552, 682
Bse3DI GCAATG 1 cut(s) 781
BseDI CCNNGG 2 cut(s) 121, 372
BseGI GGATG 3 cut(s) 250, 548, 570
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 3 cut(s) 18, 552, 682
BseRI GAGGAG 2 cut(s) 332, 539
BshFI GGCC 2 cut(s) 213, 674
BsmAI GTCTC 2 cut(s) 199, 290
BsmBI CGTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 213, 674
Bsp143I GATC 2 cut(s) 358, 478
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 2 cut(s) 333, 574
BspANI GGCC 2 cut(s) 213, 674
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 2 cut(s) 154, 643
BspPI GGATC 1 cut(s) 486
BspQI GCTCTTC 1 cut(s) 450
BspTI CTTAAG 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 3 cut(s) 18, 552, 682
BssECI CCNNGG 2 cut(s) 121, 372
BssMI GATC 2 cut(s) 358, 478
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 222
Bst6I CTCTTC 5 cut(s) 279, 322, 450, 607, 621
BstAFI CTTAAG 1 cut(s) 806
BstAPI GCANNNNNTGC 1 cut(s) 554
BstC8I GCNNGC 2 cut(s) 57, 81
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 250, 548, 570
BstKTI GATC 2 cut(s) 361, 481
BstMAI GTCTC 2 cut(s) 199, 290
BstMBI GATC 2 cut(s) 358, 478
BstMWI GCNNNNNNNGC 3 cut(s) 181, 554, 582
BstNSI RCATGY 1 cut(s) 59
BstSFI CTRYAG 2 cut(s) 150, 639
BsuRI GGCC 2 cut(s) 213, 674
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 250, 548, 570
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 3 cut(s) 559, 636, 675
Cac8I GCNNGC 2 cut(s) 57, 81
CaiI CAGNNNCTG 1 cut(s) 734
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 191
CviAII CATG 4 cut(s) 56, 122, 185, 356
CviJI RGCY 8 cut(s) 42, 97, 147, 213, 305, 510, 606, 674
CviKI_1 RGCY 8 cut(s) 42, 97, 147, 213, 305, 510, 606, 674
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 360, 480
DpnII GATC 2 cut(s) 358, 478
Eam1104I CTCTTC 5 cut(s) 279, 322, 450, 607, 621
EarI CTCTTC 5 cut(s) 279, 322, 450, 607, 621
Eco130I CCWWGG 1 cut(s) 121
Eco32I GATATC 2 cut(s) 69, 162
Eco57I CTGAAG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 211
EcoRV GATATC 2 cut(s) 69, 162
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 4 cut(s) 59, 125, 188, 359
FatI CATG 4 cut(s) 55, 121, 184, 355
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 633
FokI GGATG 3 cut(s) 257, 535, 557
FspBI CTAG 1 cut(s) 194
HaeIII GGCC 2 cut(s) 213, 674
Hin1II CATG 4 cut(s) 59, 125, 188, 359
HindIII AAGCTT 1 cut(s) 604
HinfI GANTC 3 cut(s) 275, 380, 821
HphI GGTGA 4 cut(s) 6, 347, 551, 692
Hpy166II GTNNAC 3 cut(s) 103, 349, 634
Hpy188I TCNGA 4 cut(s) 66, 280, 373, 385
Hpy188III TCNNGA 2 cut(s) 362, 712
Hpy8I GTNNAC 3 cut(s) 103, 349, 634
HpyAV CCTTC 3 cut(s) 246, 317, 613
HpyCH4V TGCA 6 cut(s) 90, 152, 175, 518, 548, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 554, 582
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 4 cut(s) 59, 125, 188, 359
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 358, 478
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 526, 771
LpnPI CCDG 8 cut(s) 31, 41, 79, 83, 150, 565, 663, 720
LweI GCATC 6 cut(s) 99, 505, 535, 557, 721, 789
MaeI CTAG 1 cut(s) 194
MalI GATC 2 cut(s) 360, 480
MboI GATC 2 cut(s) 358, 478
MluCI AATT 2 cut(s) 591, 597
MmeI TCCRAC 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 550
MseI TTAA 1 cut(s) 807
MslI CAYNNNNRTG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 806
MwoI GCNNNNNNNGC 3 cut(s) 181, 554, 582
NcoI CCATGG 1 cut(s) 121
NdeII GATC 2 cut(s) 358, 478
NlaIII CATG 4 cut(s) 59, 125, 188, 359
NlaIV GGNNCC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PfeI GAWTC 3 cut(s) 275, 380, 821
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 211
PstI CTGCAG 2 cut(s) 154, 643
PstNI CAGNNNCTG 1 cut(s) 734
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 1 cut(s) 807
Sau3AI GATC 2 cut(s) 358, 478
Sau96I GGNCC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 192
SetI ASST 8 cut(s) 51, 149, 174, 307, 506, 608, 633, 694
SfaNI GCATC 6 cut(s) 99, 505, 535, 557, 721, 789
SfcI CTRYAG 2 cut(s) 150, 639
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 607, 806
SmoI CTYRAG 2 cut(s) 607, 806
SphI GCATGC 1 cut(s) 59
Sse9I AATT 2 cut(s) 591, 597
SsiI CCGC 2 cut(s) 333, 574
SspI AATATT 1 cut(s) 649
SspMI CTAG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 121
TaqI TCGA 1 cut(s) 239
TasI AATT 2 cut(s) 591, 597
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 3 cut(s) 275, 380, 821
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 3 cut(s) 559, 643, 682
TspDTI ATGAA 4 cut(s) 357, 423, 468, 729
TspGWI ACGGA 2 cut(s) 206, 434
TspRI CASTG 3 cut(s) 559, 643, 682
Vha464I CTTAAG 1 cut(s) 806
XceI RCATGY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XmiI GTMKAC 1 cut(s) 633
XspI CTAG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.