Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Reverse (-)

10795277 .. 10796733

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCATCAGTATTTCACGCCCTCTTGGGTTCAATATTACTGCTCGTTCTTCCTTTGCTGCCACATTATGTTCATGCATTTGCATGGCCATGGGATAGAGAAACAGGGGCTGGTGCAGGCAGCAAGGGCAAAATTCATTTAGTGGGTCGCAACCACAGGCCAAGGTTCGTTACCGGCCCTTGGAAGCATGCTCACGCCACATGCTATGAGGGAAGCTCCGGTACATTTGGGGGAGCTTGCGGATACGATGATGTAGTTAAAGAAGGCTATGGCTTGGACACAGTAGCATTGAGCAATGTTTTGTTCAACAATGGGCAGGCTTGTGGTTCATGTTATGAAATCAAATGTGTGGATAATCCTCAGTGGTGCAAACCAGGACAACCGTCTCTTTTTGTTACGGCCACCAACAATTGCCCCCCAAATAATCAGCTTTCCGGTGATAATGGAGGTTGGTGCAATCCACCTCGTGAACATTTCGATATAGCCAGGCCTTCATTCAGCAAAATTGCCGAGGACAAGGCCGGCATTACTCCTGTCATTTACCGCAGGGTTCCATGCCAAAAGCAAGGAGGCATGAAGTTCACAATAACAGGGAATCCTTACTTCAACCAAGTATTGGTCTGGAACGTTGCAGGTGCCGGAGATGTGACCAGCGTTGAAGTAAAGGGCCACCGGAACCTGAAATGGACGCCTCTGAAGCGGCTTTGGGGTCAGAAGTGGGTGACTGACCAGAAGATGGCTGGTGAGAAACTGACCTTCCGAGTTAGGTCGAGTGATGGAAGATCCTCAACCTCATGGCATATAGTCCCTCAGAACTGGCAGTTTGGCCAAACCTTCCAGGGCAAGAATTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

286

Amino Acids

31.45

Weight (kDa)

9.3

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	66 - 188	9.3e-08	EXPB1-like domain 1
DPBB_1	PF03330	95 - 181	8.1e-18	Lytic transglycolase
Expansin_C	PF01357	192 - 270	6.5e-23	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	623
AccB1I	GGYRCC	1 cut(s)	635
AccB7I	CCANNNNNTGG	2 cut(s)	616, 736
AciI	CCGC	3 cut(s)	240, 544, 700
AclI	AACGTT	1 cut(s)	627
AclWI	GGATC	1 cut(s)	777
AcoI	YGGCCR	3 cut(s)	86, 399, 826
AcsI	RAATTY	2 cut(s)	132, 847
AcuI	CTGAAG	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	689
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	180, 616, 736
AgsI	TTSAA	4 cut(s)	33, 307, 607, 659
AjnI	CCWGG	3 cut(s)	373, 485, 837
AluBI	AGCT	3 cut(s)	216, 236, 430
AluI	AGCT	3 cut(s)	216, 236, 430
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	777
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	8 cut(s)	86, 158, 175, 399, 488, 519, 667, 826
ApeKI	GCWGC	2 cut(s)	58, 120
ApoI	RAATTY	2 cut(s)	132, 847
AspS9I	GGNCC	2 cut(s)	176, 667
AsuHPI	GGTGA	3 cut(s)	449, 733, 755
BalI	TGGCCA	2 cut(s)	88, 828
BanI	GGYRCC	1 cut(s)	635
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BauI	CACGAG	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	45, 132
BccI	CCATC	2 cut(s)	730, 770
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	3 cut(s)	375, 487, 839
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	1 cut(s)	856
BfuAI	ACCTGC	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	236
BisI	GCNGC	3 cut(s)	59, 121, 701
BlsI	GCNGC	3 cut(s)	60, 122, 702
Bme1390I	CCNGG	3 cut(s)	375, 487, 839
BmgT120I	GGNCC	2 cut(s)	176, 667
BmiI	GGNNCC	3 cut(s)	552, 637, 677
BmrFI	CCNGG	3 cut(s)	375, 487, 839
BmsI	GCATC	1 cut(s)	14
BoxI	GACNNNNGTC	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BsaHI	GRCGYC	1 cut(s)	689
BsaJI	CCNNGG	5 cut(s)	89, 161, 179, 510, 838
BsaWI	WCCGGW	3 cut(s)	218, 434, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 616, 736
Bse118I	RCCGGY	2 cut(s)	173, 521
Bse1I	ACTGG	1 cut(s)	821
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	3 cut(s)	375, 487, 839
BseDI	CCNNGG	5 cut(s)	89, 161, 179, 510, 838
BseLI	CCNNNNNNNGG	3 cut(s)	180, 616, 736
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	374, 824
BseNI	ACTGG	1 cut(s)	821
BseXI	GCAGC	2 cut(s)	45, 132
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	8 cut(s)	88, 160, 177, 401, 490, 521, 669, 828
BshNI	GGYRCC	1 cut(s)	635
BsiSI	CCGG	6 cut(s)	174, 219, 435, 522, 639, 673
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	3 cut(s)	180, 616, 736
BsmAI	GTCTC	1 cut(s)	390
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	8 cut(s)	88, 160, 177, 401, 490, 521, 669, 828
Bsp143I	GATC	1 cut(s)	782
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	3 cut(s)	240, 544, 700
BspANI	GGCC	8 cut(s)	88, 160, 177, 401, 490, 521, 669, 828
BspCNI	CTCAG	2 cut(s)	373, 823
BspLI	GGNNCC	3 cut(s)	552, 637, 677
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	1 cut(s)	777
BspT107I	GGYRCC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	301
BsrFI	RCCGGY	2 cut(s)	173, 521
BsrI	ACTGG	1 cut(s)	821
BssAI	RCCGGY	2 cut(s)	173, 521
BssECI	CCNNGG	5 cut(s)	89, 161, 179, 510, 838
BssMI	GATC	1 cut(s)	782
BssNI	GRCGYC	1 cut(s)	689
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	3 cut(s)	89, 161, 179
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	3 cut(s)	375, 487, 839
Bst4CI	ACNGT	2 cut(s)	283, 384
BstACI	GRCGYC	1 cut(s)	689
BstC8I	GCNNGC	5 cut(s)	118, 189, 238, 318, 523
BstDEI	CTNAG	2 cut(s)	360, 810
BstDSI	CCRYGG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	785
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	782
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 697
BstNI	CCWGG	3 cut(s)	375, 487, 839
BstNSI	RCATGY	2 cut(s)	191, 204
BstPAI	GACNNNNGTC	1 cut(s)	382
BstSCI	CCNGG	3 cut(s)	373, 485, 837
BstV1I	GCAGC	2 cut(s)	45, 132
BstX2I	RGATCY	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	782
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	8 cut(s)	88, 160, 177, 401, 490, 521, 669, 828
BtgI	CCRYGG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	5 cut(s)	118, 189, 238, 318, 523
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr10I	RCCGGY	2 cut(s)	173, 521
Cfr13I	GGNCC	2 cut(s)	176, 667
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	9 cut(s)	74, 84, 90, 188, 201, 330, 555, 574, 795
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	360, 810
DpnI	GATC	1 cut(s)	784
DpnII	GATC	1 cut(s)	782
DraIII	CACNNNGTG	1 cut(s)	467
EaeI	YGGCCR	3 cut(s)	86, 399, 826
Eco130I	CCWWGG	3 cut(s)	89, 161, 179
Eco147I	AGGCCT	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	716
EcoRII	CCWGG	3 cut(s)	373, 485, 837
EcoT14I	CCWWGG	3 cut(s)	89, 161, 179
EcoT22I	ATGCAT	1 cut(s)	79
ErhI	CCWWGG	3 cut(s)	89, 161, 179
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	9 cut(s)	77, 87, 93, 191, 204, 333, 558, 577, 798
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	9 cut(s)	73, 83, 89, 187, 200, 329, 554, 573, 794
Fnu4HI	GCNGC	3 cut(s)	59, 121, 701
Fsp4HI	GCNGC	3 cut(s)	59, 121, 701
FspBI	CTAG	1 cut(s)	856
GluI	GCNGC	3 cut(s)	59, 121, 701
HaeIII	GGCC	8 cut(s)	88, 160, 177, 401, 490, 521, 669, 828
HapII	CCGG	6 cut(s)	174, 219, 435, 522, 639, 673
HgaI	GACGC	1 cut(s)	697
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	9 cut(s)	77, 87, 93, 191, 204, 333, 558, 577, 798
HinfI	GANTC	1 cut(s)	595
HpaII	CCGG	6 cut(s)	174, 219, 435, 522, 639, 673
HphI	GGTGA	3 cut(s)	449, 733, 755
Hpy166II	GTNNAC	2 cut(s)	470, 582
Hpy188I	TCNGA	4 cut(s)	696, 714, 761, 813
Hpy188III	TCNNGA	2 cut(s)	467, 622
Hpy8I	GTNNAC	2 cut(s)	470, 582
HpyAV	CCTTC	4 cut(s)	257, 501, 766, 844
HpyCH4III	ACNGT	2 cut(s)	283, 384
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	6 cut(s)	77, 83, 116, 369, 456, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 697
HpyF3I	CTNAG	2 cut(s)	360, 810
HpySE526I	ACGT	1 cut(s)	627
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	9 cut(s)	77, 87, 93, 191, 204, 333, 558, 577, 798
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	782
LmnI	GCTCC	2 cut(s)	221, 233
Lsp1109I	GCAGC	2 cut(s)	45, 132
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	856
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	4 cut(s)	169, 394, 646, 721
MalI	GATC	1 cut(s)	784
MboI	GATC	1 cut(s)	782
MboII	GAAGA	3 cut(s)	41, 745, 792
MfeI	CAATTG	1 cut(s)	409
MflI	RGATCY	1 cut(s)	782
MlsI	TGGCCA	2 cut(s)	88, 828
MluCI	AATT	4 cut(s)	132, 409, 504, 847
MluNI	TGGCCA	2 cut(s)	88, 828
Mox20I	TGGCCA	2 cut(s)	88, 828
Mph1103I	ATGCAT	1 cut(s)	79
MroNI	GCCGGC	1 cut(s)	521
MscI	TGGCCA	2 cut(s)	88, 828
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	2 cut(s)	82, 88
Msp20I	TGGCCA	2 cut(s)	88, 828
MspI	CCGG	6 cut(s)	174, 219, 435, 522, 639, 673
MspR9I	CCNGG	3 cut(s)	375, 487, 839
MunI	CAATTG	1 cut(s)	409
MvaI	CCWGG	3 cut(s)	375, 487, 839
MwoI	GCNNNNNNNGC	2 cut(s)	126, 697
NaeI	GCCGGC	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	782
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	9 cut(s)	77, 87, 93, 191, 204, 333, 558, 577, 798
NlaIV	GGNNCC	3 cut(s)	552, 637, 677
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	2 cut(s)	646, 721
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	2 cut(s)	191, 204
PaeI	GCATGC	1 cut(s)	191
PaqCI	CACCTGC	1 cut(s)	623
PceI	AGGCCT	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	595
PflMI	CCANNNNNTGG	2 cut(s)	616, 736
PkrI	GCNGC	3 cut(s)	60, 122, 702
PshAI	GACNNNNGTC	1 cut(s)	382
Psp1406I	AACGTT	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	373, 485, 837
PspGI	CCWGG	3 cut(s)	373, 485, 837
PspN4I	GGNNCC	3 cut(s)	552, 637, 677
PspPI	GGNCC	2 cut(s)	176, 667
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	782
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	2 cut(s)	82, 88
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	59, 121, 701
Sau3AI	GATC	1 cut(s)	782
Sau96I	GGNCC	2 cut(s)	176, 667
ScrFI	CCNGG	3 cut(s)	375, 487, 839
SfaNI	GCATC	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	82, 88
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	4 cut(s)	132, 409, 504, 847
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	3 cut(s)	240, 544, 700
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	1 cut(s)	856
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	3 cut(s)	373, 485, 837
StyI	CCWWGG	3 cut(s)	89, 161, 179
TaaI	ACNGT	2 cut(s)	283, 384
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	2 cut(s)	477, 770
TasI	AATT	4 cut(s)	132, 409, 504, 847
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	2 cut(s)	646, 721
TseI	GCWGC	2 cut(s)	58, 120
Tsp45I	GTSAC	2 cut(s)	646, 721
TspDTI	ATGAA	6 cut(s)	62, 125, 318, 351, 483, 590
TspRI	CASTG	1 cut(s)	368
Van91I	CCANNNNNTGG	2 cut(s)	616, 736
XapI	RAATTY	2 cut(s)	132, 847
XceI	RCATGY	2 cut(s)	191, 204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	737
XspI	CTAG	1 cut(s)	856
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.