Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Forward (+)

14696831 .. 14698736

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCATATAAAATGTGCTTGTTGCTGCCCATCTTTCTTTGTTTGGTGGCTGATGGCGATGGGCATGACATTCATGTAGTTTCCCACAACCACCACCACAGGCCAAAGTTCGCTCCCGGTGCTTGGAAGCATGCTCATGCCACATTCTATGAAGGGGGCTCTGGAACCTTTGGGGGAGCTTGTGGATACGAGGACGTGGTACAAGAAGGATATGGCCTAGAAACAGCAGCATTAAGCGAGGCATTGTTCAACAAAGGGCAGGGATGCGGGTCATGCTACGAGATCAAATGCGTGGACGACCCTAAGTGGTGCAAGCCAGGGCAGCTAACTCTCATGGTCACCGGTACCAACAATTGCCCGCCAAACTGGAACCAAGCAAGTGACAATGGAGGATGGTGCAATCCTCCGCGCGAGCATTTTGACATAGCCAAGCCTGCCTTCGCCAAAATTGCTGAGTACAAGGCTGGCATTGTTCCTATCATGTACCGCAGAGTCCCATGCATGAAGAAAGGAGGTATAAAGTTCACAATAACTGGGAACCCATATTTCAACCAAGTGCTGGTGTGGAATGTGGGAGGAGCTGGGGAAGTGACGAGCTTGCAAGTGAAGGGCAACAAGAACCTCAAATGGACAGCAATGAAGCGGCTGTGGGGTCAGAAGTGGGAGACCGACGCCAAGATGGTCGGTGAGTCGTTGACCTTCCGAGTCAGAGGGAGCGATGGAAGATACTCAACGTCATGGCATGTTGCCCCCAACAATTGGCAGTTTGGGCAGACCTTCGAAGGCAAGAATTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

267

Amino Acids

29.5

Weight (kDa)

8.84

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	344
AccB7I	CCANNNNNTGG	2 cut(s)	559, 759
AccII	CGCG	2 cut(s)	409, 411
AciI	CCGC	5 cut(s)	267, 359, 407, 487, 643
AcsI	RAATTY	1 cut(s)	790
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	4 cut(s)	201, 346, 458, 485
AfiI	CCNNNNNNNGG	3 cut(s)	123, 559, 759
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	250, 550, 796
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	4 cut(s)	179, 325, 581, 597
AluI	AGCT	4 cut(s)	179, 325, 581, 597
Alw26I	GTCTC	1 cut(s)	659
AoxI	GGCC	2 cut(s)	101, 214
ApeKI	GCWGC	3 cut(s)	25, 227, 322
ApoI	RAATTY	1 cut(s)	790
AsiGI	ACCGGT	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	331, 698
AsuII	TTCGAA	1 cut(s)	780
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	12, 239, 334
BccI	CCATC	6 cut(s)	38, 47, 53, 387, 673, 713
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	26, 228, 323, 644
BlsI	GCNGC	4 cut(s)	27, 229, 324, 645
Bme1390I	CCNGG	2 cut(s)	117, 318
BmgBI	CACGTC	1 cut(s)	196
BmiI	GGNNCC	4 cut(s)	166, 346, 371, 539
BmrFI	CCNGG	2 cut(s)	117, 318
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	543
Bpu14I	TTCGAA	1 cut(s)	780
BpuMI	CCSGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 559, 759
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	371, 538
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	269, 398
BseLI	CCNNNNNNNGG	3 cut(s)	123, 559, 759
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	2 cut(s)	371, 538
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	12, 239, 334
BseYI	CCCAGC	1 cut(s)	581
Bsh1236I	CGCG	2 cut(s)	409, 411
BshFI	GGCC	2 cut(s)	103, 216
BshNI	GGYRCC	1 cut(s)	344
BshTI	ACCGGT	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	117, 342
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	3 cut(s)	123, 559, 759
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	103, 216
Bso31I	GGTCTC	1 cut(s)	659
Bsp119I	TTCGAA	1 cut(s)	780
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	5 cut(s)	267, 359, 407, 487, 643
BspANI	GGCC	2 cut(s)	103, 216
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	409, 411
BspLI	GGNNCC	4 cut(s)	166, 346, 371, 539
BspT104I	TTCGAA	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	371, 538
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	282
BssNI	GRCGYC	1 cut(s)	672
Bst2UI	CCWGG	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	672
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	7 cut(s)	132, 314, 359, 413, 435, 466, 599
BstDEI	CTNAG	2 cut(s)	303, 453
BstEII	GGTNACC	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	269, 398
BstFNI	CGCG	2 cut(s)	409, 411
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 273, 322, 434, 449, 769
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	134, 746
BstPI	GGTNACC	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	115, 316
BstUI	CGCG	2 cut(s)	409, 411
BstV1I	GCAGC	3 cut(s)	12, 239, 334
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	103, 216
BtgZI	GCGATG	2 cut(s)	72, 732
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	269, 398
Cac8I	GCNNGC	7 cut(s)	132, 314, 359, 413, 435, 466, 599
CfoI	GCGC	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	341
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	4 cut(s)	200, 345, 457, 484
CspAI	ACCGGT	1 cut(s)	341
CviQI	GTAC	4 cut(s)	200, 345, 457, 484
DdeI	CTNAG	2 cut(s)	303, 453
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	659
Eco91I	GGTNACC	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	161
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	479
FauI	CCCGC	2 cut(s)	260, 366
Fnu4HI	GCNGC	4 cut(s)	26, 228, 323, 644
FokI	GGATG	2 cut(s)	276, 405
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	4 cut(s)	26, 228, 323, 644
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	4 cut(s)	26, 228, 323, 644
GsaI	CCCAGC	1 cut(s)	585
HaeIII	GGCC	2 cut(s)	103, 216
HapII	CCGG	2 cut(s)	117, 342
HgaI	GACGC	1 cut(s)	680
HhaI	GCGC	1 cut(s)	411
Hin1I	GRCGYC	1 cut(s)	672
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	3 cut(s)	492, 689, 705
HpaII	CCGG	2 cut(s)	117, 342
HphI	GGTGA	2 cut(s)	331, 698
Hpy166II	GTNNAC	3 cut(s)	295, 525, 696
Hpy188I	TCNGA	3 cut(s)	657, 704, 710
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	3 cut(s)	295, 525, 696
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	7 cut(s)	146, 200, 448, 601, 709, 776, 787
HpyCH4IV	ACGT	2 cut(s)	195, 734
HpyCH4V	TGCA	4 cut(s)	312, 399, 501, 601
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 273, 322, 434, 449, 769
HpyF3I	CTNAG	2 cut(s)	303, 453
HpySE526I	ACGT	2 cut(s)	195, 734
Hsp92I	GRCGYC	1 cut(s)	672
HspAI	GCGC	1 cut(s)	409
KpnI	GGTACC	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	4 cut(s)	118, 176, 578, 714
Lsp1109I	GCAGC	3 cut(s)	12, 239, 334
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	2 cut(s)	195, 734
MaeIII	GTNAC	3 cut(s)	337, 380, 589
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	2 cut(s)	517, 735
MfeI	CAATTG	2 cut(s)	352, 757
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	4 cut(s)	352, 447, 757, 790
MlyI	GAGTC	3 cut(s)	501, 698, 714
MnlI	CCTC	8 cut(s)	184, 232, 383, 414, 506, 569, 632, 704
Mph1103I	ATGCAT	1 cut(s)	503
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	2 cut(s)	117, 342
MspR9I	CCNGG	2 cut(s)	117, 318
MunI	CAATTG	2 cut(s)	352, 757
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	2 cut(s)	409, 411
MwoI	GCNNNNNNNGC	6 cut(s)	119, 273, 322, 434, 449, 769
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	282
NlaIV	GGNNCC	4 cut(s)	166, 346, 371, 539
NmuCI	GTSAC	3 cut(s)	337, 380, 589
NsiI	ATGCAT	1 cut(s)	503
NspI	RCATGY	2 cut(s)	134, 746
NspV	TTCGAA	1 cut(s)	780
PaeI	GCATGC	1 cut(s)	134
PflMI	CCANNNNNTGG	2 cut(s)	559, 759
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	27, 229, 324, 645
PleI	GAGTC	3 cut(s)	500, 697, 713
PpsI	GAGTC	3 cut(s)	500, 697, 713
Psp6I	CCWGG	1 cut(s)	316
PspEI	GGTNACC	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	4 cut(s)	166, 346, 371, 539
RsaI	GTAC	4 cut(s)	201, 346, 458, 485
RsaNI	GTAC	4 cut(s)	200, 345, 457, 484
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	4 cut(s)	26, 228, 323, 644
Sau3AI	GATC	1 cut(s)	282
SchI	GAGTC	3 cut(s)	501, 698, 714
ScrFI	CCNGG	2 cut(s)	117, 318
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	780
SmiMI	CAYNNNNRTG	1 cut(s)	135
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	4 cut(s)	352, 447, 757, 790
SsiI	CCGC	5 cut(s)	267, 359, 407, 487, 643
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	115, 316
TaiI	ACGT	2 cut(s)	198, 737
TaqI	TCGA	1 cut(s)	780
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	4 cut(s)	352, 447, 757, 790
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	646
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	3 cut(s)	337, 380, 589
TseI	GCWGC	3 cut(s)	25, 227, 322
Tsp45I	GTSAC	3 cut(s)	337, 380, 589
TspDTI	ATGAA	4 cut(s)	62, 165, 518, 653
Van91I	CCANNNNNTGG	2 cut(s)	559, 759
XapI	RAATTY	1 cut(s)	790
XceI	RCATGY	2 cut(s)	134, 746
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.