RLG00000024229

expansin-A9-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
33323312 .. 33326042
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024229

Sequence Viewer

Length: 1443 bp
ATGGCACCAGTCTTTCACGCCCTCTTGGGTTCATTACTACTCGTTCTTCCTTTGCTGCCTCATTATGTTCATGCAAATGCACGGAAAAACGTTGGTAAATATACAGGGGCTGGTTCACGCAGTCATGACAAGCTTCATGTAGTGGGTCGCTCCCACAGGCCAAGGTTCGCTACCGGCCCTTGGAAGCATGCTCACGCCACATTCTACGAAGGAGGCTCCGGTACATTTGGGGGAGCTTGCGGCTACGAAGATGTAGTTAAAGAAGGATATGGGTTGGACACAGCAGCATTGAGCAATGCATTGTTCAACAATGGGCAGGCTTGTGGTTCATGTTATGAAATCAAATGTGTGGAAAATCCTCAGTGGTGCAAACCAGGACAGAAGTCACTTTTTGTTACGGCCACCAACAATTGCCCCCCAAATAACCAGCAGTCCGCTGATAATGGAGGATGGTGCAATCCACCTCGTGAGCATTTCGATATAGCCAAGCCTTCATTCAGCAAAATTGCCGAGTACAAGGCCGGCATTACTCCTGTCATGTACCGCAGGGTTCCTTGCCAAAAGCAAGGAGGCATAAAGTTTACAATAACAGGGAATCCTTACTTCAACCAAGTGTTGGTCTGGAACGTCGCAGGTGCCGGAGATGTGACCAGCGTTGAAGTAAAGGGCCACAGGAACCTGAAATGGACACCGCTGAAGCGCCTTTGGGGTCAGAAGTGGGTGACTGACCAGAAAATGGTTGGTGAGAAACTGACCTTCCGAGTTAGGACGAGTGATGGAAGATCCTCAACCTCATGGCATATAATCCCTAACGACTGGCAGTTTGGCCAGACCTTCCAAGGCAAGAATTTCCCTCGACTCTATCTCCATCGTGGACCCGCCTCCTCCGCCGCCGTTAAATCTGCTCAGCCCGTCGCCGAACTAGGGAGAGACCATTGGGCCATGGACCGCCCCGGAAAGATTGGGATCCGAAACGGGGAAGGAGTTGACGGCGAAAGTGGGCTGACCGGGCTTGATTTTGCTGGGAGGGATGAACATGAGGCCAACTTGGCGGCGAGCGGCTGGGGTTGGGACGACGACGTATTGGGAGAAGGTGAAGTTGATGGTGGAGTTGAGGATGGAGAAGGAGGGGAGCTTAACGGAGTTGATGGAGATTTTGGGGTCTTTGGGTCAAACCCACCAAACCCAGAAACAATTTTTCAGAATCTAGAAGAACCCTTCTCTGCATTCTACAACATGTCTCCTCTTCTCCTAAATCTCTCATTAATGAGAACCCTCTCCAGCTGGTCTACCCTTTGCGACAACGACCCTAGTAGCCGGGGGTGTTGTTTGAATCAAAAAGTTTGGGGACAGGGTCGTGTGGTTGTGGTTGTGGCTATGGTGCTGATCGATGATTGCTCACCGACTCTATTGGACTATTGTTATGCTGCGCCGCCGCCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

52.29

Weight (kDa)

6.54

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 66 - 188 1.7e-08 EXPB1-like domain 1
DPBB_1 PF03330 94 - 181 3.4e-20 Lytic transglycolase
Expansin_C PF01357 192 - 270 2.5e-23 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
Acc36I ACCTGC 1 cut(s) 623
AccB1I GGYRCC 2 cut(s) 4, 635
AccB7I CCANNNNNTGG 2 cut(s) 616, 736
AccBSI CCGCTC 1 cut(s) 1059
AccI GTMKAC 1 cut(s) 1289
AclI AACGTT 1 cut(s) 90
AclWI GGATC 3 cut(s) 777, 961, 974
AcoI YGGCCR 2 cut(s) 399, 826
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 1 cut(s) 716
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 3 cut(s) 223, 515, 542
AfiI CCNNNNNNNGG 5 cut(s) 180, 616, 736, 924, 976
AflIII ACRYGT 1 cut(s) 1236
AgsI TTSAA 4 cut(s) 307, 607, 659, 1333
AjnI CCWGG 1 cut(s) 373
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AluBI AGCT 4 cut(s) 133, 236, 1135, 1284
AluI AGCT 4 cut(s) 133, 236, 1135, 1284
Alw26I GTCTC 2 cut(s) 924, 1245
AlwI GGATC 3 cut(s) 777, 961, 974
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 8 cut(s) 158, 175, 399, 519, 667, 826, 939, 1041
ApeKI GCWGC 3 cut(s) 55, 284, 1427
ApoI RAATTY 1 cut(s) 847
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AseI ATTAAT 1 cut(s) 1265
AspLEI GCGC 2 cut(s) 702, 1432
AspS9I GGNCC 5 cut(s) 176, 667, 875, 939, 946
AsuC2I CCSGG 3 cut(s) 954, 1009, 1319
AsuHPI GGTGA 4 cut(s) 733, 755, 1106, 1392
AvaII GGWCC 2 cut(s) 875, 946
BalI TGGCCA 1 cut(s) 828
BamHI GGATCC 1 cut(s) 966
BanI GGYRCC 2 cut(s) 4, 635
BauI CACGAG 1 cut(s) 465
BbvI GCAGC 3 cut(s) 42, 296, 1414
BccI CCATC 6 cut(s) 444, 770, 876, 1097, 1112, 1142
BceAI ACGGC 3 cut(s) 414, 878, 1006
BciT130I CCWGG 1 cut(s) 375
BcnI CCSGG 3 cut(s) 954, 1009, 1319
BcoDI GTCTC 2 cut(s) 924, 1245
BfaI CTAG 3 cut(s) 923, 1208, 1311
BfoI RGCGCY 1 cut(s) 703
BfuAI ACCTGC 1 cut(s) 623
BglI GCCNNNNNGGC 1 cut(s) 1049
BisI GCNGC 9 cut(s) 56, 241, 285, 891, 1053, 1060, 1428, 1433, 1436
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 9 cut(s) 57, 242, 286, 892, 1054, 1061, 1429, 1434, 1437
Bme1390I CCNGG 4 cut(s) 375, 954, 1009, 1319
Bme18I GGWCC 2 cut(s) 875, 946
BmgT120I GGNCC 5 cut(s) 176, 667, 875, 939, 946
BmiI GGNNCC 7 cut(s) 6, 217, 552, 637, 677, 877, 968
BmrFI CCNGG 4 cut(s) 375, 954, 1009, 1319
BoxI GACNNNNGTC 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 1264
Bpu1102I GCTNAGC 1 cut(s) 906
BpuMI CCSGG 3 cut(s) 954, 1009, 1319
Bsa29I ATCGAT 1 cut(s) 1389
BsaBI GATNNNNATC 1 cut(s) 965
BsaI GGTCTC 1 cut(s) 924
BsaJI CCNNGG 6 cut(s) 161, 179, 838, 942, 952, 1318
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 849, 879
Bsc4I CCNNNNNNNGG 5 cut(s) 180, 616, 736, 924, 976
Bse118I RCCGGY 2 cut(s) 173, 521
Bse1I ACTGG 2 cut(s) 8, 821
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 965
BseBI CCWGG 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 1389
BseDI CCNNGG 6 cut(s) 161, 179, 838, 942, 952, 1318
BseGI GGATG 3 cut(s) 455, 1036, 1123
BseJI GATNNNNATC 1 cut(s) 965
BseLI CCNNNNNNNGG 5 cut(s) 180, 616, 736, 924, 976
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 374, 920
BseNI ACTGG 2 cut(s) 8, 821
BseRI GAGGAG 2 cut(s) 874, 1233
BseXI GCAGC 3 cut(s) 42, 296, 1414
BseYI CCCAGC 2 cut(s) 1022, 1062
BshFI GGCC 8 cut(s) 160, 177, 401, 521, 669, 828, 941, 1043
BshNI GGYRCC 2 cut(s) 4, 635
BshVI ATCGAT 1 cut(s) 1389
BsiSI CCGG 7 cut(s) 174, 219, 522, 639, 954, 1008, 1318
BslFI GGGAC 2 cut(s) 1085, 1362
BslI CCNNNNNNNGG 5 cut(s) 180, 616, 736, 924, 976
BsmAI GTCTC 2 cut(s) 924, 1245
BsmFI GGGAC 2 cut(s) 1085, 1362
BsmI GAATGC 1 cut(s) 1226
BsnI GGCC 8 cut(s) 160, 177, 401, 521, 669, 828, 941, 1043
Bso31I GGTCTC 1 cut(s) 924
Bsp143I GATC 3 cut(s) 782, 966, 1386
Bsp1720I GCTNAGC 1 cut(s) 906
Bsp19I CCATGG 1 cut(s) 942
BspANI GGCC 8 cut(s) 160, 177, 401, 521, 669, 828, 941, 1043
BspCNI CTCAG 2 cut(s) 373, 919
BspDI ATCGAT 1 cut(s) 1389
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 7 cut(s) 6, 217, 552, 637, 677, 877, 968
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 3 cut(s) 777, 961, 974
BspT107I GGYRCC 2 cut(s) 4, 635
BspTNI GGTCTC 1 cut(s) 924
BsrBI CCGCTC 1 cut(s) 1059
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 2 cut(s) 173, 521
BsrI ACTGG 2 cut(s) 8, 821
BssAI RCCGGY 2 cut(s) 173, 521
BssECI CCNNGG 6 cut(s) 161, 179, 838, 942, 952, 1318
BssMI GATC 3 cut(s) 782, 966, 1386
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 4 cut(s) 161, 179, 838, 942
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 1251
BstC8I GCNNGC 5 cut(s) 189, 238, 318, 523, 1057
BstDEI CTNAG 2 cut(s) 360, 906
BstDSI CCRYGG 1 cut(s) 942
BstF5I GGATG 3 cut(s) 455, 1036, 1123
BstH2I RGCGCY 1 cut(s) 703
BstHHI GCGC 2 cut(s) 702, 1432
BstKTI GATC 3 cut(s) 785, 969, 1389
BstMAI GTCTC 2 cut(s) 924, 1245
BstMBI GATC 3 cut(s) 782, 966, 1386
BstMWI GCNNNNNNNGC 3 cut(s) 887, 1009, 1049
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 2 cut(s) 191, 1240
BstPAI GACNNNNGTC 1 cut(s) 382
BstSCI CCNGG 4 cut(s) 373, 952, 1007, 1317
BstV1I GCAGC 3 cut(s) 42, 296, 1414
BstX2I RGATCY 2 cut(s) 782, 966
BstYI RGATCY 2 cut(s) 782, 966
Bsu15I ATCGAT 1 cut(s) 1389
BsuRI GGCC 8 cut(s) 160, 177, 401, 521, 669, 828, 941, 1043
BsuTUI ATCGAT 1 cut(s) 1389
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 3 cut(s) 455, 1036, 1123
BtsIMutI CAGTG 1 cut(s) 368
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 5 cut(s) 189, 238, 318, 523, 1057
CaiI CAGNNNCTG 1 cut(s) 110
CciI TCATGA 1 cut(s) 124
CfoI GCGC 2 cut(s) 702, 1432
Cfr10I RCCGGY 2 cut(s) 173, 521
Cfr13I GGNCC 5 cut(s) 176, 667, 875, 939, 946
ClaI ATCGAT 1 cut(s) 1389
Csp6I GTAC 3 cut(s) 222, 514, 541
CviQI GTAC 3 cut(s) 222, 514, 541
DdeI CTNAG 2 cut(s) 360, 906
DpnI GATC 3 cut(s) 784, 968, 1388
DpnII GATC 3 cut(s) 782, 966, 1386
DraIII CACNNNGTG 1 cut(s) 467
EaeI YGGCCR 2 cut(s) 399, 826
Eam1104I CTCTTC 1 cut(s) 1251
EarI CTCTTC 1 cut(s) 1251
EciI GGCGGA 1 cut(s) 877
Eco130I CCWWGG 4 cut(s) 161, 179, 838, 942
Eco31I GGTCTC 1 cut(s) 924
Eco47I GGWCC 2 cut(s) 875, 946
Eco57I CTGAAG 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 4 cut(s) 161, 179, 838, 942
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 4 cut(s) 161, 179, 838, 942
FaqI GGGAC 2 cut(s) 1085, 1362
FauI CCCGC 1 cut(s) 886
FblI GTMKAC 1 cut(s) 1289
Fnu4HI GCNGC 9 cut(s) 56, 241, 285, 891, 1053, 1060, 1428, 1433, 1436
FokI GGATG 3 cut(s) 462, 1043, 1130
Fsp4HI GCNGC 9 cut(s) 56, 241, 285, 891, 1053, 1060, 1428, 1433, 1436
FspBI CTAG 3 cut(s) 923, 1208, 1311
GlaI GCGC 2 cut(s) 701, 1431
GluI GCNGC 9 cut(s) 56, 241, 285, 891, 1053, 1060, 1428, 1433, 1436
GsaI CCCAGC 2 cut(s) 1026, 1066
GsuI CTGGAG 1 cut(s) 1264
HaeII RGCGCY 1 cut(s) 703
HaeIII GGCC 8 cut(s) 160, 177, 401, 521, 669, 828, 941, 1043
HapII CCGG 7 cut(s) 174, 219, 522, 639, 954, 1008, 1318
HhaI GCGC 2 cut(s) 702, 1432
Hin6I GCGC 2 cut(s) 700, 1430
HinP1I GCGC 2 cut(s) 700, 1430
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 5 cut(s) 595, 858, 1204, 1333, 1405
HpaII CCGG 7 cut(s) 174, 219, 522, 639, 954, 1008, 1318
HphI GGTGA 4 cut(s) 733, 755, 1106, 1392
Hpy166II GTNNAC 5 cut(s) 116, 582, 875, 988, 1290
Hpy188I TCNGA 4 cut(s) 714, 761, 971, 1203
Hpy188III TCNNGA 4 cut(s) 125, 467, 622, 1208
Hpy8I GTNNAC 5 cut(s) 116, 582, 875, 988, 1290
Hpy99I CGWCG 4 cut(s) 632, 917, 1079, 1082
HpyAV CCTTC 9 cut(s) 203, 257, 501, 766, 844, 974, 1085, 1118, 1228
HpyCH4IV ACGT 3 cut(s) 90, 627, 1080
HpyCH4V TGCA 6 cut(s) 74, 80, 299, 369, 456, 1226
HpyF10VI GCNNNNNNNGC 3 cut(s) 887, 1009, 1049
HpyF3I CTNAG 2 cut(s) 360, 906
HpySE526I ACGT 3 cut(s) 90, 627, 1080
HspAI GCGC 2 cut(s) 700, 1430
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
Kzo9I GATC 3 cut(s) 782, 966, 1386
LmnI GCTCC 4 cut(s) 155, 221, 233, 1132
Lsp1109I GCAGC 3 cut(s) 42, 296, 1414
MaeI CTAG 3 cut(s) 923, 1208, 1311
MaeII ACGT 3 cut(s) 90, 627, 1080
MaeIII GTNAC 4 cut(s) 384, 394, 646, 721
MalI GATC 3 cut(s) 784, 968, 1388
MbiI CCGCTC 1 cut(s) 1059
MboI GATC 3 cut(s) 782, 966, 1386
MboII GAAGA 5 cut(s) 38, 260, 792, 1223, 1238
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 2 cut(s) 782, 966
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 4 cut(s) 409, 504, 847, 1194
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 2 cut(s) 852, 1399
MmeI TCCRAC 1 cut(s) 255
Mox20I TGGCCA 1 cut(s) 828
Mph1103I ATGCAT 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 521
MscI TGGCCA 1 cut(s) 828
MseI TTAA 4 cut(s) 258, 897, 1137, 1265
MslI CAYNNNNRTG 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 828
MspA1I CMGCKG 3 cut(s) 437, 694, 1284
MspI CCGG 7 cut(s) 174, 219, 522, 639, 954, 1008, 1318
MspR9I CCNGG 4 cut(s) 375, 954, 1009, 1319
MunI CAATTG 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 1226
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 887, 1009, 1049
NaeI GCCGGC 1 cut(s) 523
NciI CCSGG 3 cut(s) 954, 1009, 1319
NcoI CCATGG 1 cut(s) 942
NdeII GATC 3 cut(s) 782, 966, 1386
NgoMIV GCCGGC 1 cut(s) 521
NlaIV GGNNCC 7 cut(s) 6, 217, 552, 637, 677, 877, 968
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 3 cut(s) 384, 646, 721
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 2 cut(s) 191, 1240
PaeI GCATGC 1 cut(s) 191
PagI TCATGA 1 cut(s) 124
PaqCI CACCTGC 1 cut(s) 623
PciI ACATGT 1 cut(s) 1236
PctI GAATGC 1 cut(s) 1226
PdiI GCCGGC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 595, 1204, 1333
PflFI GACNNNGTC 1 cut(s) 1353
PflMI CCANNNNNTGG 2 cut(s) 616, 736
PkrI GCNGC 9 cut(s) 57, 242, 286, 892, 1054, 1061, 1429, 1434, 1437
PleI GAGTC 2 cut(s) 852, 1399
PpsI GAGTC 2 cut(s) 852, 1399
PscI ACATGT 1 cut(s) 1236
PshAI GACNNNNGTC 1 cut(s) 382
PshBI ATTAAT 1 cut(s) 1265
Psp1406I AACGTT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 2 cut(s) 1022, 1062
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 7 cut(s) 6, 217, 552, 637, 677, 877, 968
PspPI GGNCC 5 cut(s) 176, 667, 875, 939, 946
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 2 cut(s) 782, 966
PsyI GACNNNGTC 1 cut(s) 1353
PvuII CAGCTG 1 cut(s) 1284
RsaI GTAC 3 cut(s) 223, 515, 542
RsaNI GTAC 3 cut(s) 222, 514, 541
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 4 cut(s) 258, 897, 1137, 1265
SatI GCNGC 9 cut(s) 56, 241, 285, 891, 1053, 1060, 1428, 1433, 1436
Sau3AI GATC 3 cut(s) 782, 966, 1386
Sau96I GGNCC 5 cut(s) 176, 667, 875, 939, 946
SchI GAGTC 2 cut(s) 852, 1399
ScrFI CCNGG 4 cut(s) 375, 954, 1009, 1319
SinI GGWCC 2 cut(s) 875, 946
SmiMI CAYNNNNRTG 1 cut(s) 75
SphI GCATGC 1 cut(s) 191
Sse9I AATT 4 cut(s) 409, 504, 847, 1194
SspMI CTAG 3 cut(s) 923, 1208, 1311
StyD4I CCNGG 4 cut(s) 373, 952, 1007, 1317
StyI CCWWGG 4 cut(s) 161, 179, 838, 942
TaiI ACGT 3 cut(s) 93, 630, 1083
TaqI TCGA 3 cut(s) 477, 856, 1389
TasI AATT 4 cut(s) 409, 504, 847, 1194
TatI WGTACW 1 cut(s) 513
TauI GCSGC 6 cut(s) 243, 893, 1055, 1062, 1435, 1438
TfiI GAWTC 3 cut(s) 595, 1204, 1333
Tru1I TTAA 4 cut(s) 258, 897, 1137, 1265
Tru9I TTAA 4 cut(s) 258, 897, 1137, 1265
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 3 cut(s) 384, 646, 721
TseI GCWGC 3 cut(s) 55, 284, 1427
Tsp45I GTSAC 3 cut(s) 384, 646, 721
TspDTI ATGAA 7 cut(s) 21, 59, 125, 318, 351, 483, 1047
TspGWI ACGGA 2 cut(s) 97, 1155
TspRI CASTG 1 cut(s) 368
Tth111I GACNNNGTC 1 cut(s) 1353
Van91I CCANNNNNTGG 2 cut(s) 616, 736
VpaK11BI GGWCC 2 cut(s) 875, 946
VspI ATTAAT 1 cut(s) 1265
XapI RAATTY 1 cut(s) 847
XbaI TCTAGA 1 cut(s) 1207
XceI RCATGY 2 cut(s) 191, 1240
XcmI CCANNNNNNNNNTGG 1 cut(s) 737
XmiI GTMKAC 1 cut(s) 1289
XspI CTAG 3 cut(s) 923, 1208, 1311
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.