Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Forward (+)

42493626 .. 42494638

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G516700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGATTGCCTAATTTGAAAGCCCTATTGGGTTCATTGCTGCTCTTTCTTCTAGCAGTATTTCCCGACCATGCCATTGCCCACCATAGGCCAAGGTTCACTGCTGGCCCTTGGAAGCAATCTCATGCCACATTCTATGAAGGAGGCTCCGGAACATTTGGTGGAGCTTGTGGTTACCATGATGTTGTTCAAGAAGGATATGGCCTGGAGACAGTAGCATTGAGCAATGCATTGTTCAACAATGGACAGTCATGTGGTGCATGCTACGATATCAAATGTGTAGACCAACCTCAATGGTGCAAGCCCGGGAATCCGATTCTGCATGTTACGGCGACTAACAATTGCCCCCCGAATTGGAATCAGGCAAGCGACAATGGAGGATGGTGCAATCCACCACGCGAGCATTTTGACATAGCCAAGCCTGTATTCCTCAATATTGCCGAGTACAAGGCTGGCATCATCCCAATTGAATATCGCAGGGTTTCATGCCAAAAGAAAGGAGGTATTCGATTCACAATAACCGGGAACCCTTACTTCAACGAAGTGTTGGTGTGGAATGTGGCAGGAGTTGGGGATGTGGTCAGCGTGCAAGTGAAGGGCCACGACAAGTTGAAATGGACAATGATGAAGCGGATGTGGGGTCAGAGGTGGGTTACTGATGCCAAGTTGGTTGGTGAGTCACTCACCTTCCGAGTCCTAGCAAGTGATAAAAGATACTCCACCTCATGGCATATAGCCCCCAAGAATTGGCAGTTTGGCCAGACATTCGAAGGCAAGAACTTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

263

Amino Acids

29.35

Weight (kDa)

9.18

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	726, 747
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	399
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	1 cut(s)	631
AcoI	YGGCCR	1 cut(s)	757
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	4 cut(s)	87, 354, 726, 747
AgsI	TTSAA	6 cut(s)	19, 191, 238, 470, 538, 613
AjnI	CCWGG	1 cut(s)	204
AjuI	GAANNNNNNNTTGG	4 cut(s)	11, 43, 410, 442
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	5 cut(s)	89, 106, 202, 598, 757
ApeKI	GCWGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	107, 598
AsuC2I	CCSGG	3 cut(s)	306, 307, 523
AsuHPI	GGTGA	2 cut(s)	676, 686
AsuII	TTCGAA	1 cut(s)	768
AvaI	CYCGRG	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	759
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	375
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	3 cut(s)	306, 307, 523
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	53, 698
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	4 cut(s)	206, 306, 307, 523
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	107, 598
BmiI	GGNNCC	2 cut(s)	148, 527
BmrFI	CCNGG	4 cut(s)	206, 306, 307, 523
BmsI	GCATC	2 cut(s)	465, 649
BpmI	CTGGAG	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	768
BpuMI	CCSGG	3 cut(s)	306, 307, 523
BsaJI	CCNNGG	3 cut(s)	92, 110, 305
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 354, 726, 747
Bse3DI	GCAATG	3 cut(s)	35, 75, 232
BseAI	TCCGGA	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	92, 110, 305
BseGI	GGATG	4 cut(s)	386, 459, 580, 639
BseLI	CCNNNNNNNGG	4 cut(s)	87, 354, 726, 747
BseMI	GCAATG	3 cut(s)	35, 75, 232
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	5 cut(s)	91, 108, 204, 600, 759
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	150, 306, 522
BslI	CCNNNNNNNGG	4 cut(s)	87, 354, 726, 747
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	5 cut(s)	91, 108, 204, 600, 759
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	768
Bsp13I	TCCGGA	1 cut(s)	149
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	5 cut(s)	91, 108, 204, 600, 759
BspEI	TCCGGA	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	148, 527
BspT104I	TTCGAA	1 cut(s)	768
BsrDI	GCAATG	3 cut(s)	35, 75, 232
BssECI	CCNNGG	3 cut(s)	92, 110, 305
BssT1I	CCWWGG	2 cut(s)	92, 110
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	214, 249
BstBI	TTCGAA	1 cut(s)	768
BstC8I	GCNNGC	7 cut(s)	106, 262, 302, 367, 401, 454, 587
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	4 cut(s)	386, 459, 580, 639
BstFNI	CGCG	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	2 cut(s)	264, 326
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	4 cut(s)	204, 304, 305, 521
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	27
BsuRI	GGCC	5 cut(s)	91, 108, 204, 600, 759
BtsCI	GGATG	4 cut(s)	386, 459, 580, 639
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	7 cut(s)	106, 262, 302, 367, 401, 454, 587
Cfr13I	GGNCC	2 cut(s)	107, 598
Cfr9I	CCCGGG	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	8 cut(s)	71, 125, 179, 252, 261, 323, 486, 726
CviQI	GTAC	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	92, 110
Eco32I	GATATC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	92, 110
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	92, 110
FaeI	CATG	8 cut(s)	74, 128, 182, 255, 264, 326, 489, 729
FatI	CATG	8 cut(s)	70, 124, 178, 251, 260, 322, 485, 725
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	4 cut(s)	393, 446, 587, 646
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	53, 698
GluI	GCNGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	5 cut(s)	91, 108, 204, 600, 759
HapII	CCGG	3 cut(s)	150, 306, 522
Hin1II	CATG	8 cut(s)	74, 128, 182, 255, 264, 326, 489, 729
HinfI	GANTC	6 cut(s)	310, 316, 358, 510, 677, 693
HpaII	CCGG	3 cut(s)	150, 306, 522
HphI	GGTGA	2 cut(s)	676, 686
Hpy166II	GTNNAC	2 cut(s)	99, 283
Hpy188I	TCNGA	4 cut(s)	315, 645, 692, 785
Hpy188III	TCNNGA	3 cut(s)	65, 150, 191
Hpy8I	GTNNAC	2 cut(s)	99, 283
HpyAV	CCTTC	5 cut(s)	134, 188, 589, 697, 764
HpyCH4III	ACNGT	2 cut(s)	214, 249
HpyCH4V	TGCA	6 cut(s)	230, 260, 300, 322, 387, 589
Hsp92II	CATG	8 cut(s)	74, 128, 182, 255, 264, 326, 489, 729
Kpn2I	TCCGGA	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	152, 164
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	2 cut(s)	465, 649
MaeI	CTAG	2 cut(s)	53, 698
MaeIII	GTNAC	4 cut(s)	173, 325, 652, 678
MboII	GAAGA	1 cut(s)	41
MfeI	CAATTG	2 cut(s)	340, 465
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	5 cut(s)	13, 340, 352, 465, 745
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	2 cut(s)	686, 702
MnlI	CCTC	7 cut(s)	137, 300, 371, 440, 494, 639, 733
Mox20I	TGGCCA	1 cut(s)	759
Mph1103I	ATGCAT	1 cut(s)	232
MroI	TCCGGA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	759
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	3 cut(s)	150, 306, 522
MspR9I	CCNGG	4 cut(s)	206, 306, 307, 523
MunI	CAATTG	2 cut(s)	340, 465
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	399
NciI	CCSGG	3 cut(s)	306, 307, 523
NlaIII	CATG	8 cut(s)	74, 128, 182, 255, 264, 326, 489, 729
NlaIV	GGNNCC	2 cut(s)	148, 527
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	678
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	2 cut(s)	264, 326
NspV	TTCGAA	1 cut(s)	768
PaeI	GCATGC	1 cut(s)	264
PfeI	GAWTC	4 cut(s)	310, 316, 358, 510
PflMI	CCANNNNNTGG	2 cut(s)	726, 747
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	2 cut(s)	685, 701
PpsI	GAGTC	2 cut(s)	685, 701
Psp6I	CCWGG	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	148, 527
PspPI	GGNCC	2 cut(s)	107, 598
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SatI	GCNGC	1 cut(s)	41
Sau96I	GGNCC	2 cut(s)	107, 598
SchI	GAGTC	2 cut(s)	686, 702
ScrFI	CCNGG	4 cut(s)	206, 306, 307, 523
SetI	ASST	7 cut(s)	98, 169, 292, 505, 650, 689, 725
SfaNI	GCATC	2 cut(s)	465, 649
SfuI	TTCGAA	1 cut(s)	768
SmaI	CCCGGG	1 cut(s)	307
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	5 cut(s)	13, 340, 352, 465, 745
SsiI	CCGC	1 cut(s)	631
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	53, 698
StyD4I	CCNGG	4 cut(s)	204, 304, 305, 521
StyI	CCWWGG	2 cut(s)	92, 110
TaaI	ACNGT	2 cut(s)	214, 249
TaqI	TCGA	2 cut(s)	508, 768
TasI	AATT	5 cut(s)	13, 340, 352, 465, 745
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	4 cut(s)	310, 316, 358, 510
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	678
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	4 cut(s)	24, 153, 474, 641
TspMI	CCCGGG	1 cut(s)	305
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	2 cut(s)	726, 747
XceI	RCATGY	2 cut(s)	264, 326
XmaI	CCCGGG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	2 cut(s)	53, 698
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.