Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Forward (+)

18443488 .. 18444533

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1115700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACATTGCCTAATCTGCGAGCTCTTTTGGGTTCCTTGGCTGTCTTTCTTTTTGTGCTAGCTGACCATCTCCATGTGGTTGCTGCCAACCGTGGCCGGTTTGGAGTTCACCACCCCATAAAGCACCATAAGCCAAGGTTCACTGCTGGCCCTTGGAAGCAAGCTCATGCCACATTCTACGAAGGCGGCTCGGGAACGTTTGGCGGAGCTTGTGGTTACCACGACGTGGTTCAAGAAGGCTATGGCCTCGAGACAGTGGCTTTGAGCAATGCTTTGTTCAACAATGGGCTGTCATGTGGTGCATGCTATGAAATGAAGTGTGTGGATGAGCCCCAATGGTGTAAACCAGGGAGCCCTATTCTCACTGTTACTGCAACCAACAATTGCCCACCAAATTGGAATCAGGCTAGTGACAATGGAGGATGGTGCAATCCGCCACGCGAGCATTTCGATGTAGCCAAGCCTGTGTTCCTCAACATTGCTGAGTACAAGGCAGGCATTATTCCAGTCACGTACCGCAGGGTTCCATGCCAGAAGAAAGGGGGCATGCGATTCACAATAACCGGGAACCCTTATTTCAATGAAGTGTTGGTATGGAACGTGGGAGGAGCTGGGGACATCATCAGCGTGCAGGTGAAGGGCTCCGACAAGCTCAAATGGACAGCAATGAGTCGGATGTGGGGTCAGCGGTGGGTTACCGGTGCCAAGATGGTCGGTGAGTCACTGACCTTCCGAGTTGAAGCAAGTGATAAAAGACACTCAACTTCATGGCATGTTGCGCCCAAGACATGGCAGTTTGGCCAGACTTTTGAAGGCAAGAACTTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

277

Amino Acids

30.54

Weight (kDa)

9.29

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	57 - 179	8.6e-07	EXPB1-like domain 1
DPBB_1	PF03330	85 - 172	3.9e-19	Lytic transglycolase
Expansin_C	PF01357	183 - 261	1.8e-23	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	2 cut(s)	226, 789
AccII	CGCG	1 cut(s)	441
AciI	CCGC	5 cut(s)	186, 204, 434, 517, 688
AclI	AACGTT	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	94, 799
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	488, 515
AfiI	CCNNNNNNNGG	2 cut(s)	226, 789
AgeI	ACCGGT	1 cut(s)	698
AgsI	TTSAA	5 cut(s)	233, 280, 580, 740, 812
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	6 cut(s)	23, 62, 164, 209, 611, 652
AluI	AGCT	6 cut(s)	23, 62, 164, 209, 611, 652
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	245
Ama87I	CYCGRG	2 cut(s)	190, 248
AoxI	GGCC	4 cut(s)	94, 148, 244, 799
ApeKI	GCWGC	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AsiGI	ACCGGT	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	3 cut(s)	101, 646, 728
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	2 cut(s)	190, 248
BalI	TGGCCA	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	4 cut(s)	25, 333, 356, 644
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	3 cut(s)	75, 417, 703
BciT130I	CCWGG	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	59, 408
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	84, 187
BlsI	GCNGC	2 cut(s)	85, 188
Bme1390I	CCNGG	2 cut(s)	348, 565
BmeT110I	CYCGRG	2 cut(s)	190, 248
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	6 cut(s)	34, 353, 525, 569, 643, 703
BmrFI	CCNGG	2 cut(s)	348, 565
BmtI	GCTAGC	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	565
BsaAI	YACGTR	1 cut(s)	513
BsaJI	CCNNGG	5 cut(s)	36, 91, 134, 152, 347
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 789
Bse118I	RCCGGY	2 cut(s)	96, 698
Bse1I	ACTGG	1 cut(s)	506
Bse3DI	GCAATG	4 cut(s)	5, 274, 477, 672
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	5 cut(s)	36, 91, 134, 152, 347
BseGI	GGATG	3 cut(s)	331, 428, 681
BseLI	CCNNNNNNNGG	2 cut(s)	226, 789
BseMI	GCAATG	4 cut(s)	5, 274, 477, 672
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	611
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	4 cut(s)	96, 150, 246, 801
BshNI	GGYRCC	1 cut(s)	701
BshTI	ACCGGT	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	2 cut(s)	190, 248
BsiSI	CCGG	3 cut(s)	97, 564, 699
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	226, 789
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	4 cut(s)	96, 150, 246, 801
BsoBI	CYCGRG	2 cut(s)	190, 248
Bsp1286I	GDGCHC	4 cut(s)	25, 333, 356, 644
BspACI	CCGC	5 cut(s)	186, 204, 434, 517, 688
BspANI	GGCC	4 cut(s)	96, 150, 246, 801
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	6 cut(s)	34, 353, 525, 569, 643, 703
BspMI	ACCTGC	1 cut(s)	622
BspOI	GCTAGC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	701
BsrDI	GCAATG	4 cut(s)	5, 274, 477, 672
BsrFI	RCCGGY	2 cut(s)	96, 698
BsrI	ACTGG	1 cut(s)	506
BssAI	RCCGGY	2 cut(s)	96, 698
BssECI	CCNNGG	5 cut(s)	36, 91, 134, 152, 347
BssT1I	CCWWGG	3 cut(s)	36, 134, 152
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	92, 256, 367
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	9 cut(s)	21, 60, 148, 162, 304, 443, 496, 548, 629
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	1 cut(s)	91
BstEII	GGTNACC	2 cut(s)	215, 694
BstF5I	GGATG	3 cut(s)	331, 428, 681
BstFNI	CGCG	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	781
BstMAI	GTCTC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 130, 442, 778
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	3 cut(s)	306, 550, 776
BstPI	GGTNACC	2 cut(s)	215, 694
BstSCI	CCNGG	2 cut(s)	346, 563
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	396
BsuRI	GGCC	4 cut(s)	96, 150, 246, 801
BtgI	CCRYGG	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	331, 428, 681
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	4 cut(s)	141, 261, 363, 722
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	9 cut(s)	21, 60, 148, 162, 304, 443, 496, 548, 629
CfoI	GCGC	1 cut(s)	781
Cfr10I	RCCGGY	2 cut(s)	96, 698
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	487, 514
CspAI	ACCGGT	1 cut(s)	698
CviAII	CATG	9 cut(s)	74, 167, 294, 303, 528, 547, 768, 773, 789
CviQI	GTAC	2 cut(s)	487, 514
DdeI	CTNAG	1 cut(s)	483
DraIII	CACNNNGTG	1 cut(s)	226
EaeI	YGGCCR	2 cut(s)	94, 799
EciI	GGCGGA	2 cut(s)	219, 423
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	3 cut(s)	36, 134, 152
Eco24I	GRGCYC	4 cut(s)	25, 333, 356, 644
Eco53kI	GAGCTC	1 cut(s)	23
Eco88I	CYCGRG	2 cut(s)	190, 248
Eco91I	GGTNACC	2 cut(s)	215, 694
EcoICRI	GAGCTC	1 cut(s)	23
EcoO65I	GGTNACC	2 cut(s)	215, 694
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	3 cut(s)	36, 134, 152
EcoT38I	GRGCYC	4 cut(s)	25, 333, 356, 644
ErhI	CCWWGG	3 cut(s)	36, 134, 152
FaeI	CATG	9 cut(s)	77, 170, 297, 306, 531, 550, 771, 776, 792
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	9 cut(s)	73, 166, 293, 302, 527, 546, 767, 772, 788
Fnu4HI	GCNGC	2 cut(s)	84, 187
FokI	GGATG	3 cut(s)	338, 435, 688
FriOI	GRGCYC	4 cut(s)	25, 333, 356, 644
Fsp4HI	GCNGC	2 cut(s)	84, 187
FspBI	CTAG	2 cut(s)	59, 408
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	2 cut(s)	84, 187
GsaI	CCCAGC	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	96, 150, 246, 801
HapII	CCGG	3 cut(s)	97, 564, 699
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	9 cut(s)	77, 170, 297, 306, 531, 550, 771, 776, 792
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HinfI	GANTC	4 cut(s)	400, 552, 670, 719
HpaII	CCGG	3 cut(s)	97, 564, 699
HphI	GGTGA	3 cut(s)	101, 646, 728
Hpy166II	GTNNAC	3 cut(s)	109, 141, 344
Hpy188I	TCNGA	4 cut(s)	646, 675, 734, 827
Hpy188III	TCNNGA	3 cut(s)	192, 233, 250
Hpy8I	GTNNAC	3 cut(s)	109, 141, 344
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	176, 230, 631, 739, 806
HpyCH4III	ACNGT	3 cut(s)	92, 256, 367
HpyCH4IV	ACGT	4 cut(s)	197, 225, 512, 600
HpyCH4V	TGCA	4 cut(s)	302, 374, 429, 631
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 130, 442, 778
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	4 cut(s)	197, 225, 512, 600
Hsp92II	CATG	9 cut(s)	77, 170, 297, 306, 531, 550, 771, 776, 792
HspAI	GCGC	1 cut(s)	779
LmnI	GCTCC	4 cut(s)	206, 351, 608, 647
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	59, 408
MaeII	ACGT	4 cut(s)	197, 225, 512, 600
MaeIII	GTNAC	6 cut(s)	215, 367, 410, 508, 694, 720
MboII	GAAGA	1 cut(s)	547
MfeI	CAATTG	1 cut(s)	382
MhlI	GDGCHC	4 cut(s)	25, 333, 356, 644
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	2 cut(s)	382, 394
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	2 cut(s)	679, 728
MmeI	TCCRAC	2 cut(s)	653, 669
MnlI	CCTC	4 cut(s)	257, 413, 482, 599
Mox20I	TGGCCA	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	801
MslI	CAYNNNNRTG	3 cut(s)	72, 450, 626
Msp20I	TGGCCA	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	688
MspI	CCGG	3 cut(s)	97, 564, 699
MspR9I	CCNGG	2 cut(s)	348, 565
MunI	CAATTG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	4 cut(s)	16, 130, 442, 778
NciI	CCSGG	1 cut(s)	565
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	9 cut(s)	77, 170, 297, 306, 531, 550, 771, 776, 792
NlaIV	GGNNCC	6 cut(s)	34, 353, 525, 569, 643, 703
NmuCI	GTSAC	3 cut(s)	410, 508, 720
NspI	RCATGY	3 cut(s)	306, 550, 776
PaeI	GCATGC	2 cut(s)	306, 550
PaeR7I	CTCGAG	1 cut(s)	248
PaqCI	CACCTGC	1 cut(s)	622
PfeI	GAWTC	2 cut(s)	400, 552
PflMI	CCANNNNNTGG	2 cut(s)	226, 789
PinAI	ACCGGT	1 cut(s)	698
PkrI	GCNGC	2 cut(s)	85, 188
PleI	GAGTC	2 cut(s)	678, 727
PpsI	GAGTC	2 cut(s)	678, 727
Ppu21I	YACGTR	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	346
PspEI	GGTNACC	2 cut(s)	215, 694
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	6 cut(s)	34, 353, 525, 569, 643, 703
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	488, 515
RsaNI	GTAC	2 cut(s)	487, 514
RseI	CAYNNNNRTG	3 cut(s)	72, 450, 626
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	2 cut(s)	84, 187
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	2 cut(s)	679, 728
ScrFI	CCNGG	2 cut(s)	348, 565
SduI	GDGCHC	4 cut(s)	25, 333, 356, 644
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	3 cut(s)	72, 450, 626
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SphI	GCATGC	2 cut(s)	306, 550
Sse9I	AATT	2 cut(s)	382, 394
SsiI	CCGC	5 cut(s)	186, 204, 434, 517, 688
SspMI	CTAG	2 cut(s)	59, 408
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	346, 563
StyI	CCWWGG	3 cut(s)	36, 134, 152
TaaI	ACNGT	3 cut(s)	92, 256, 367
TaiI	ACGT	4 cut(s)	200, 228, 515, 603
TaqI	TCGA	2 cut(s)	249, 450
TasI	AATT	2 cut(s)	382, 394
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	2 cut(s)	400, 552
TscAI	CASTG	4 cut(s)	148, 261, 370, 729
TseFI	GTSAC	3 cut(s)	410, 508, 720
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	3 cut(s)	410, 508, 720
TspDTI	ATGAA	4 cut(s)	324, 329, 597, 756
TspRI	CASTG	4 cut(s)	148, 261, 370, 729
Van91I	CCANNNNNTGG	2 cut(s)	226, 789
XceI	RCATGY	3 cut(s)	306, 550, 776
XhoI	CTCGAG	1 cut(s)	248
XspI	CTAG	2 cut(s)	59, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.