Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Forward (+)

16785096 .. 16786161

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1106100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACATTGCCTAATCTGCGAGCTCTTTTGGGTTCCTTGGCCGTCTTTCTTTTTGTGCTAGCCGACCATCTTCATGTGGTTGCTGCCAACCGCGGCCGGTTTGGAGTTCACCACCCCATAAAGCACCATAAACCAAGGTTCACTGCTGGCCCTTGGAAGCAAGCTCATGCCACATTCTACGAAGGTGGCTCGGGAACGTTTGGCGGAGCTTGTGGTTACCACGACGTGGTTCAAGAAGGCTATGGCCTCGAGACAGTGGCTCTGAGCAATGCTTTGTTCAACAATGGGCTGTCATGTGGTGCATGCTATGAAATCAAGTGTGTGGATGAGCCCCAATGGTGCAAGCCAGGGAACCCTATTCTCTCTGTTACTGCAACCAACAATTGCCCACCAAATTGGAATCAGGCTAGTGACAATGGAGGATGGTGCAATCCGCCACGCGAGCATTTCGATATAGCCAAGCCTGTGTTCTTCAACATTGCTGAGTACAAGGCGGGCATTATTCCAGTCACGTACCGCAGGGTTCCATGTCAGAAGAAAGGAGGCATGCGATTCACAATAACTGGGAACCCTTATTTCAATGAAGTGTTGGTATGGAACGTGGGAGGAGCTGGGGACATCATCAGCGTGCAGGTGAAGGGCTCCGACAAGCTCAAATGGACAGCAATGAGTCGGATGTGGGGTCAGCGGTGGGTTACCGGTGCCAAGATGGTCGGTGAGTCACTGACCTTCCGAGTTGAAGCAAGTGATAGAAGACACTCAACTTCATGGCATGTTGCCCCAAAGACTTGGCAGTTTGGCCAGACTTTTGAAGGGAAGAACTTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

277

Amino Acids

30.61

Weight (kDa)

9.3

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	57 - 179	4.5e-07	EXPB1-like domain 1
DPBB_1	PF03330	85 - 172	4.9e-18	Lytic transglycolase
Expansin_C	PF01357	183 - 261	1.9e-23	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	2 cut(s)	93, 441
AciI	CCGC	7 cut(s)	91, 93, 204, 434, 494, 517, 688
AclI	AACGTT	1 cut(s)	197
AcoI	YGGCCR	3 cut(s)	39, 94, 799
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	488, 515
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgeI	ACCGGT	1 cut(s)	698
AgsI	TTSAA	6 cut(s)	233, 280, 475, 580, 740, 812
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	5 cut(s)	23, 164, 209, 611, 652
AluI	AGCT	5 cut(s)	23, 164, 209, 611, 652
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	245
Ama87I	CYCGRG	2 cut(s)	190, 248
AoxI	GGCC	5 cut(s)	39, 94, 148, 244, 799
ApeKI	GCWGC	1 cut(s)	83
AsiGI	ACCGGT	1 cut(s)	698
Asp700I	GAANNNNTTC	1 cut(s)	821
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	101, 646, 728
AsuNHI	GCTAGC	1 cut(s)	58
AvaI	CYCGRG	2 cut(s)	190, 248
BalI	TGGCCA	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	3 cut(s)	25, 333, 644
BbsI	GAAGAC	1 cut(s)	760
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	3 cut(s)	75, 417, 703
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	59, 408
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	84, 94
BlsI	GCNGC	2 cut(s)	85, 95
Bme1390I	CCNGG	1 cut(s)	348
BmeT110I	CYCGRG	2 cut(s)	190, 248
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	6 cut(s)	34, 353, 525, 569, 643, 703
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	573
BmtI	GCTAGC	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	760
BsaAI	YACGTR	1 cut(s)	513
BsaJI	CCNNGG	5 cut(s)	36, 91, 134, 152, 347
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	2 cut(s)	96, 698
Bse1I	ACTGG	2 cut(s)	506, 568
Bse3DI	GCAATG	4 cut(s)	5, 274, 477, 672
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	5 cut(s)	36, 91, 134, 152, 347
BseGI	GGATG	3 cut(s)	331, 428, 681
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	4 cut(s)	5, 274, 477, 672
BseMII	CTCAG	2 cut(s)	254, 474
BseNI	ACTGG	2 cut(s)	506, 568
BseRI	GAGGAG	1 cut(s)	621
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	611
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	93, 441
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	5 cut(s)	41, 96, 150, 246, 801
BshNI	GGYRCC	1 cut(s)	701
BshTI	ACCGGT	1 cut(s)	698
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	2 cut(s)	190, 248
BsiSI	CCGG	2 cut(s)	97, 699
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	5 cut(s)	41, 96, 150, 246, 801
BsoBI	CYCGRG	2 cut(s)	190, 248
Bsp1286I	GDGCHC	3 cut(s)	25, 333, 644
BspACI	CCGC	7 cut(s)	91, 93, 204, 434, 494, 517, 688
BspANI	GGCC	5 cut(s)	41, 96, 150, 246, 801
BspCNI	CTCAG	2 cut(s)	255, 475
BspFNI	CGCG	2 cut(s)	93, 441
BspLI	GGNNCC	6 cut(s)	34, 353, 525, 569, 643, 703
BspMI	ACCTGC	1 cut(s)	622
BspOI	GCTAGC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	701
BsrDI	GCAATG	4 cut(s)	5, 274, 477, 672
BsrFI	RCCGGY	2 cut(s)	96, 698
BsrI	ACTGG	2 cut(s)	506, 568
BssAI	RCCGGY	2 cut(s)	96, 698
BssECI	CCNNGG	5 cut(s)	36, 91, 134, 152, 347
BssT1I	CCWWGG	3 cut(s)	36, 134, 152
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	263, 483
BstDSI	CCRYGG	1 cut(s)	91
BstEII	GGTNACC	2 cut(s)	215, 694
BstF5I	GGATG	3 cut(s)	331, 428, 681
BstFNI	CGCG	2 cut(s)	93, 441
BstMAI	GTCTC	1 cut(s)	245
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 442
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	3 cut(s)	306, 550, 776
BstPI	GGTNACC	2 cut(s)	215, 694
BstSCI	CCNGG	1 cut(s)	346
BstUI	CGCG	2 cut(s)	93, 441
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	760
BstXI	CCANNNNNNTGG	2 cut(s)	396, 789
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	5 cut(s)	41, 96, 150, 246, 801
BtgI	CCRYGG	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	331, 428, 681
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	3 cut(s)	141, 261, 722
BveI	ACCTGC	1 cut(s)	622
Cfr10I	RCCGGY	2 cut(s)	96, 698
Cfr13I	GGNCC	1 cut(s)	149
Cfr42I	CCGCGG	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	487, 514
CspAI	ACCGGT	1 cut(s)	698
CviAII	CATG	8 cut(s)	74, 167, 294, 303, 528, 547, 768, 773
CviQI	GTAC	2 cut(s)	487, 514
DdeI	CTNAG	2 cut(s)	263, 483
DraIII	CACNNNGTG	1 cut(s)	226
EaeI	YGGCCR	3 cut(s)	39, 94, 799
EagI	CGGCCG	1 cut(s)	94
EciI	GGCGGA	2 cut(s)	219, 423
Ecl136II	GAGCTC	1 cut(s)	23
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	36, 134, 152
Eco24I	GRGCYC	3 cut(s)	25, 333, 644
Eco52I	CGGCCG	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	23
Eco88I	CYCGRG	2 cut(s)	190, 248
Eco91I	GGTNACC	2 cut(s)	215, 694
EcoICRI	GAGCTC	1 cut(s)	23
EcoO65I	GGTNACC	2 cut(s)	215, 694
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	3 cut(s)	36, 134, 152
EcoT38I	GRGCYC	3 cut(s)	25, 333, 644
ErhI	CCWWGG	3 cut(s)	36, 134, 152
FaeI	CATG	8 cut(s)	77, 170, 297, 306, 531, 550, 771, 776
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	8 cut(s)	73, 166, 293, 302, 527, 546, 767, 772
FauI	CCCGC	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	84, 94
FokI	GGATG	3 cut(s)	338, 435, 688
FriOI	GRGCYC	3 cut(s)	25, 333, 644
Fsp4HI	GCNGC	2 cut(s)	84, 94
FspBI	CTAG	2 cut(s)	59, 408
GluI	GCNGC	2 cut(s)	84, 94
GsaI	CCCAGC	1 cut(s)	615
HaeIII	GGCC	5 cut(s)	41, 96, 150, 246, 801
HapII	CCGG	2 cut(s)	97, 699
Hin1II	CATG	8 cut(s)	77, 170, 297, 306, 531, 550, 771, 776
HinfI	GANTC	4 cut(s)	400, 552, 670, 719
HpaII	CCGG	2 cut(s)	97, 699
HphI	GGTGA	3 cut(s)	101, 646, 728
Hpy166II	GTNNAC	2 cut(s)	109, 141
Hpy188I	TCNGA	6 cut(s)	264, 534, 646, 675, 734, 827
Hpy188III	TCNNGA	3 cut(s)	192, 233, 250
Hpy8I	GTNNAC	2 cut(s)	109, 141
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	176, 230, 631, 739, 806
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	4 cut(s)	197, 225, 512, 600
HpyCH4V	TGCA	5 cut(s)	302, 342, 374, 429, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 442
HpyF3I	CTNAG	2 cut(s)	263, 483
HpySE526I	ACGT	4 cut(s)	197, 225, 512, 600
Hsp92II	CATG	8 cut(s)	77, 170, 297, 306, 531, 550, 771, 776
KspI	CCGCGG	1 cut(s)	94
LmnI	GCTCC	3 cut(s)	206, 608, 647
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	59, 408
MaeII	ACGT	4 cut(s)	197, 225, 512, 600
MaeIII	GTNAC	6 cut(s)	215, 367, 410, 508, 694, 720
MboII	GAAGA	5 cut(s)	62, 463, 547, 765, 829
MfeI	CAATTG	1 cut(s)	382
MhlI	GDGCHC	3 cut(s)	25, 333, 644
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	2 cut(s)	382, 394
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	2 cut(s)	679, 728
MmeI	TCCRAC	2 cut(s)	653, 669
MnlI	CCTC	4 cut(s)	257, 413, 536, 599
Mox20I	TGGCCA	1 cut(s)	801
MroXI	GAANNNNTTC	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	801
MslI	CAYNNNNRTG	2 cut(s)	72, 626
Msp20I	TGGCCA	1 cut(s)	801
MspA1I	CMGCKG	2 cut(s)	93, 688
MspI	CCGG	2 cut(s)	97, 699
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	2 cut(s)	93, 441
MwoI	GCNNNNNNNGC	2 cut(s)	16, 442
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	8 cut(s)	77, 170, 297, 306, 531, 550, 771, 776
NlaIV	GGNNCC	6 cut(s)	34, 353, 525, 569, 643, 703
NmuCI	GTSAC	3 cut(s)	410, 508, 720
NspI	RCATGY	3 cut(s)	306, 550, 776
PaeI	GCATGC	2 cut(s)	306, 550
PaeR7I	CTCGAG	1 cut(s)	248
PaqCI	CACCTGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	2 cut(s)	400, 552
PflMI	CCANNNNNTGG	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	698
PkrI	GCNGC	2 cut(s)	85, 95
PleI	GAGTC	2 cut(s)	678, 727
PpsI	GAGTC	2 cut(s)	678, 727
Ppu21I	YACGTR	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	346
PspEI	GGTNACC	2 cut(s)	215, 694
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	6 cut(s)	34, 353, 525, 569, 643, 703
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	488, 515
RsaNI	GTAC	2 cut(s)	487, 514
RseI	CAYNNNNRTG	2 cut(s)	72, 626
SacI	GAGCTC	1 cut(s)	25
SacII	CCGCGG	1 cut(s)	94
SatI	GCNGC	2 cut(s)	84, 94
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	2 cut(s)	679, 728
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	3 cut(s)	25, 333, 644
Sfr274I	CTCGAG	1 cut(s)	248
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	72, 626
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SphI	GCATGC	2 cut(s)	306, 550
Sse9I	AATT	2 cut(s)	382, 394
SsiI	CCGC	7 cut(s)	91, 93, 204, 434, 494, 517, 688
SspMI	CTAG	2 cut(s)	59, 408
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	3 cut(s)	36, 134, 152
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	4 cut(s)	200, 228, 515, 603
TaqI	TCGA	2 cut(s)	249, 450
TasI	AATT	2 cut(s)	382, 394
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	400, 552
TscAI	CASTG	3 cut(s)	148, 261, 729
TseFI	GTSAC	3 cut(s)	410, 508, 720
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	3 cut(s)	410, 508, 720
TspDTI	ATGAA	4 cut(s)	62, 324, 597, 756
TspRI	CASTG	3 cut(s)	148, 261, 729
Van91I	CCANNNNNTGG	1 cut(s)	226
XceI	RCATGY	3 cut(s)	306, 550, 776
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	2 cut(s)	59, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.