Rmu_sc0005264.1_g000004

expansin-A9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005264.1
OG0004238
Physical Location & Seq
Forward (+)
14155 .. 15252
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005264.1_g000004.1.cds

Sequence Viewer

Length: 774 bp
atgagttctgccctcctgggttcattgcttttcattcttttcgtgttacctgaccatgtcaccgctcgccataagccaaagttcagacctggcccttggaagcatgctcatgccacattctacgaaggcggctctggatcatttggtggtgcttgtggttaccacgacgtcgttcaagaaggctatggcctcgacacggtggctttgagcgacaccttgttcaacaatgggcagtcgtgtggtgcatgttacgatatccaatgtgtggactccccacaatggtgcaagcccgggcagccaactcttcatgttacagcaaccaaccattgccccccgaattataaccttcccagtgacaatggaggatggtgcaatgcaccacgtgagcacttcgatatagccaagccggtgttcctcaacattgcagagtacaaggctggcatagtaccaatcatataccgcagggttccgtgccaaaagagaggaggcatccgattcacgataaccgggaatccttacttcaatgaagtgttggtgtggaacgtgggaggtgccggagatgtgataagcgtgcaagtgaagggccatgacaagctcaaatggacaacgatgaagcgaatgtggggtcagaggtggattactgatgccaagttggttggggagtctctgaccttcagagttgaagcaagtgataaaagacgctcaactgcatggcatatagcccctcaaaactggcagtttggccagacctttgaaggcaagaacttccgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

257

Amino Acids

28.69

Weight (kDa)

9.0

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 65
AciI CCGC 3 cut(s) 63, 129, 460
AclWI GGATC 1 cut(s) 145
AcoI YGGCCR 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 658
AcvI CACGTG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 2 cut(s) 431, 447
AfiI CCNNNNNNNGG 3 cut(s) 196, 265, 279
AgsI TTSAA 5 cut(s) 176, 223, 523, 683, 755
AjnI CCWGG 2 cut(s) 15, 88
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AleI CACNNNNGTG 1 cut(s) 280
AluBI AGCT 1 cut(s) 595
AluI AGCT 1 cut(s) 595
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 669
AlwI GGATC 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 4 cut(s) 91, 187, 583, 742
ApeKI GCWGC 1 cut(s) 295
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
AspS9I GGNCC 2 cut(s) 92, 583
AsuC2I CCSGG 3 cut(s) 291, 292, 508
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 290
BalI TGGCCA 1 cut(s) 744
BanI GGYRCC 1 cut(s) 551
BbrPI CACGTG 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 360
BciT130I CCWGG 2 cut(s) 17, 90
BcnI CCSGG 3 cut(s) 291, 292, 508
BcoDI GTCTC 1 cut(s) 669
BisI GCNGC 2 cut(s) 130, 296
BlsI GCNGC 2 cut(s) 131, 297
Bme1390I CCNGG 5 cut(s) 17, 90, 291, 292, 508
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 92, 583
BmiI GGNNCC 2 cut(s) 468, 553
BmrFI CCNGG 5 cut(s) 17, 90, 291, 292, 508
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 498, 634
BmuI ACTGGG 1 cut(s) 345
BpuMI CCSGG 3 cut(s) 291, 292, 508
BsaAI YACGTR 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 16, 95, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 265, 279
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 351, 737
Bse3DI GCAATG 4 cut(s) 23, 325, 379, 420
BseBI CCWGG 2 cut(s) 17, 90
BseDI CCNNGG 3 cut(s) 16, 95, 290
BseGI GGATG 2 cut(s) 371, 489
BseLI CCNNNNNNNGG 3 cut(s) 196, 265, 279
BseMI GCAATG 4 cut(s) 23, 325, 379, 420
BseNI ACTGG 2 cut(s) 351, 737
BseRI GAGGAG 1 cut(s) 498
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 4 cut(s) 93, 189, 585, 744
BshNI GGYRCC 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 4 cut(s) 291, 407, 507, 555
BslI CCNNNNNNNGG 3 cut(s) 196, 265, 279
BsmAI GTCTC 1 cut(s) 669
BsnI GGCC 4 cut(s) 93, 189, 585, 744
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 3 cut(s) 63, 129, 460
BspANI GGCC 4 cut(s) 93, 189, 585, 744
BspLI GGNNCC 2 cut(s) 468, 553
BspPI GGATC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 4 cut(s) 23, 325, 379, 420
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 2 cut(s) 351, 737
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 3 cut(s) 16, 95, 290
BssMI GATC 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 17, 90
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 383
BstC8I GCNNGC 5 cut(s) 67, 105, 287, 439, 572
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 2 cut(s) 371, 489
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 2 cut(s) 17, 90
BstNSI RCATGY 2 cut(s) 107, 249
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 5 cut(s) 15, 88, 289, 290, 506
BstV1I GCAGC 1 cut(s) 307
BsuRI GGCC 4 cut(s) 93, 189, 585, 744
BtsCI GGATG 2 cut(s) 371, 489
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 5 cut(s) 67, 105, 287, 439, 572
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 2 cut(s) 92, 583
Cfr9I CCCGGG 1 cut(s) 290
CseI GACGC 1 cut(s) 708
Csp6I GTAC 2 cut(s) 430, 446
CviAII CATG 7 cut(s) 56, 104, 110, 246, 308, 587, 711
CviQI GTAC 2 cut(s) 430, 446
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
DraIII CACNNNGTG 1 cut(s) 383
EaeI YGGCCR 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 95
Eco32I GATATC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 658
Eco72I CACGTG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 15, 88
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 7 cut(s) 59, 107, 113, 249, 311, 590, 714
FatI CATG 7 cut(s) 55, 103, 109, 245, 307, 586, 710
Fnu4HI GCNGC 2 cut(s) 130, 296
FokI GGATG 2 cut(s) 378, 476
Fsp4HI GCNGC 2 cut(s) 130, 296
GluI GCNGC 2 cut(s) 130, 296
HaeIII GGCC 4 cut(s) 93, 189, 585, 744
HapII CCGG 4 cut(s) 291, 407, 507, 555
HgaI GACGC 1 cut(s) 708
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 7 cut(s) 59, 107, 113, 249, 311, 590, 714
HinfI GANTC 4 cut(s) 269, 495, 511, 662
HpaII CCGG 4 cut(s) 291, 407, 507, 555
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 6 cut(s) 86, 494, 630, 669, 677, 770
Hpy188III TCNNGA 3 cut(s) 135, 176, 499
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 2 cut(s) 170, 173
HpyAV CCTTC 6 cut(s) 119, 173, 356, 574, 682, 749
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 3 cut(s) 168, 382, 543
HpyCH4V TGCA 7 cut(s) 245, 285, 372, 377, 425, 574, 710
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpySE526I ACGT 3 cut(s) 168, 382, 543
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 7 cut(s) 59, 107, 113, 249, 311, 590, 714
Kzo9I GATC 1 cut(s) 137
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 2 cut(s) 498, 634
MaeII ACGT 3 cut(s) 168, 382, 543
MaeIII GTNAC 6 cut(s) 45, 58, 158, 248, 310, 353
MalI GATC 1 cut(s) 139
MbiI CCGCTC 1 cut(s) 65
MboI GATC 1 cut(s) 137
MboII GAAGA 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 390
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 1 cut(s) 337
MluNI TGGCCA 1 cut(s) 744
MlyI GAGTC 2 cut(s) 263, 671
MnlI CCTC 9 cut(s) 23, 200, 356, 425, 476, 479, 542, 624, 735
Mox20I TGGCCA 1 cut(s) 744
MscI TGGCCA 1 cut(s) 744
MslI CAYNNNNRTG 2 cut(s) 108, 280
Msp20I TGGCCA 1 cut(s) 744
MspI CCGG 4 cut(s) 291, 407, 507, 555
MspR9I CCNGG 5 cut(s) 17, 90, 291, 292, 508
MvaI CCWGG 2 cut(s) 17, 90
MwoI GCNNNNNNNGC 1 cut(s) 295
NciI CCSGG 3 cut(s) 291, 292, 508
NdeII GATC 1 cut(s) 137
NlaIII CATG 7 cut(s) 59, 107, 113, 249, 311, 590, 714
NlaIV GGNNCC 2 cut(s) 468, 553
NmuCI GTSAC 2 cut(s) 58, 353
NspI RCATGY 2 cut(s) 107, 249
OliI CACNNNNGTG 1 cut(s) 280
PaeI GCATGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 495, 511
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 2 cut(s) 131, 297
PleI GAGTC 2 cut(s) 263, 670
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 2 cut(s) 263, 670
Ppu21I YACGTR 1 cut(s) 383
PsiI TTATAA 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 15, 88
PspCI CACGTG 1 cut(s) 383
PspEI GGTNACC 1 cut(s) 158
PspGI CCWGG 2 cut(s) 15, 88
PspN4I GGNNCC 2 cut(s) 468, 553
PspPI GGNCC 2 cut(s) 92, 583
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 2 cut(s) 431, 447
RsaNI GTAC 2 cut(s) 430, 446
RseI CAYNNNNRTG 2 cut(s) 108, 280
SatI GCNGC 2 cut(s) 130, 296
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 2 cut(s) 92, 583
SchI GAGTC 2 cut(s) 263, 671
ScrFI CCNGG 5 cut(s) 17, 90, 291, 292, 508
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 2 cut(s) 498, 634
SmaI CCCGGG 1 cut(s) 292
SmiMI CAYNNNNRTG 2 cut(s) 108, 280
SphI GCATGC 1 cut(s) 107
SrfI GCCCGGGC 1 cut(s) 292
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 63, 129, 460
StyD4I CCNGG 5 cut(s) 15, 88, 289, 290, 506
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 3 cut(s) 171, 385, 546
TaqI TCGA 2 cut(s) 192, 393
TasI AATT 1 cut(s) 337
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 2 cut(s) 495, 511
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 58, 353
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 2 cut(s) 58, 353
TspDTI ATGAA 5 cut(s) 12, 22, 296, 540, 626
TspGWI ACGGA 1 cut(s) 459
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 1 cut(s) 358
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 265
XceI RCATGY 2 cut(s) 107, 249
XmaI CCCGGG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.