Rh3DG187000

expansin-A9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004238
Physical Location & Seq
Forward (+)
16630838 .. 16632120
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG187000.1

Sequence Viewer

Length: 789 bp
ATGTCAATGGCGTCAATGAGTTCTGCCCTCCTGGGTTCATTGCTTTTCATTCTTCTCGTGTTACCTGACCATGTCACCGCTCGCCATAAGCCAAAGTTCAGACCTGGCCCTTGGAAGCATGCTCATGCCACATTCTACGAAGGCGGCTCTGGATCATTTGGTGGTGCTTGTGGTTACCACGACGTCGTTCAAGAAGGCTATGGCCTCGACACGGTGGCTTTGAGCGACACCTTGTTCAACAATGGGCAGTCGTGTGGTGCATGTTACGATATCCAATGTGTGGACTCCCCACAATGGTGCAAGCCCGGGCAGCCAACTCTTCATGTTACAGCAACCAACCATTGCCCCCCGAATTATAACCTTCCCAGTGACAATGGAGGATGGTGCAATGCACCACGTGAGCACTTCGATATAGCCAAGCCGGTGTTCCTCAACATTGCAGAGTACAAGGCTGGCATAGTACCAATCATATACCGCAGGGTTCCGTGCCAAAAGAGAGGAGGCATCCGATTCACGATAACCGGGAATCCTTACTTCAATGAAGTGTTGGTGTGGAACGTGGGAGGTGCCGGAGATGTGATAAGCGTGCAAGTGAAGGGCCATGACAAGCTCAAATGGACAACGATGAAGCGAATGTGGGGTCAGAGGTGGATTACTGATGCCATGTTGGTTGGGGAGTCTCTGACCTTCAGAGTTGAAGCAAGTGATAAAAGACGCTCAACTTCATGGCATATAGCCCCTCAGAACTGGCAGTTTGGCCAGACCTTTGAAGGCAAGAACTTCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

262

Amino Acids

29.18

Weight (kDa)

8.89

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 43 - 164 4.3e-06 EXPB1-like domain 1
DPBB_1 PF03330 71 - 158 9.7e-18 Lytic transglycolase
Expansin_C PF01357 169 - 247 1.4e-23 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AatII GACGTC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 566
AccB7I CCANNNNNTGG 1 cut(s) 280
AccBSI CCGCTC 1 cut(s) 80
AciI CCGC 3 cut(s) 78, 144, 475
AclWI GGATC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 757
AcuI CTGAAG 1 cut(s) 673
AcvI CACGTG 1 cut(s) 398
AcyI GRCGYC 2 cut(s) 11, 183
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 2 cut(s) 446, 462
AfiI CCNNNNNNNGG 3 cut(s) 211, 280, 294
AgsI TTSAA 5 cut(s) 191, 238, 538, 698, 770
AjnI CCWGG 2 cut(s) 30, 103
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AleI CACNNNNGTG 1 cut(s) 295
AluBI AGCT 1 cut(s) 610
AluI AGCT 1 cut(s) 610
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 4 cut(s) 106, 202, 598, 757
ApeKI GCWGC 1 cut(s) 310
ArsI GACNNNNNNTTYG 2 cut(s) 625, 657
AspS9I GGNCC 2 cut(s) 107, 598
AsuC2I CCSGG 3 cut(s) 306, 307, 523
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 305
BalI TGGCCA 1 cut(s) 759
BanI GGYRCC 1 cut(s) 566
BauI CACGAG 1 cut(s) 56
BbrPI CACGTG 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 375
BciT130I CCWGG 2 cut(s) 32, 105
BcnI CCSGG 3 cut(s) 306, 307, 523
BcoDI GTCTC 1 cut(s) 684
BisI GCNGC 2 cut(s) 145, 311
BlsI GCNGC 2 cut(s) 146, 312
Bme1390I CCNGG 5 cut(s) 32, 105, 306, 307, 523
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 107, 598
BmiI GGNNCC 2 cut(s) 483, 568
BmrFI CCNGG 5 cut(s) 32, 105, 306, 307, 523
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 513, 649
BmuI ACTGGG 1 cut(s) 360
BpuMI CCSGG 3 cut(s) 306, 307, 523
BsaAI YACGTR 1 cut(s) 398
BsaHI GRCGYC 2 cut(s) 11, 183
BsaJI CCNNGG 3 cut(s) 31, 110, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 280, 294
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 366, 752
Bse3DI GCAATG 4 cut(s) 38, 340, 394, 435
BseBI CCWGG 2 cut(s) 32, 105
BseDI CCNNGG 3 cut(s) 31, 110, 305
BseGI GGATG 2 cut(s) 386, 504
BseLI CCNNNNNNNGG 3 cut(s) 211, 280, 294
BseMI GCAATG 4 cut(s) 38, 340, 394, 435
BseMII CTCAG 1 cut(s) 755
BseNI ACTGG 2 cut(s) 366, 752
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 4 cut(s) 108, 204, 600, 759
BshNI GGYRCC 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 4 cut(s) 306, 422, 522, 570
BslI CCNNNNNNNGG 3 cut(s) 211, 280, 294
BsmAI GTCTC 1 cut(s) 684
BsnI GGCC 4 cut(s) 108, 204, 600, 759
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 3 cut(s) 78, 144, 475
BspANI GGCC 4 cut(s) 108, 204, 600, 759
BspCNI CTCAG 1 cut(s) 754
BspLI GGNNCC 2 cut(s) 483, 568
BspPI GGATC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 80
BsrDI GCAATG 4 cut(s) 38, 340, 394, 435
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 2 cut(s) 366, 752
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 3 cut(s) 31, 110, 305
BssMI GATC 1 cut(s) 152
BssNI GRCGYC 2 cut(s) 11, 183
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 32, 105
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 324
BstACI GRCGYC 2 cut(s) 11, 183
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 5 cut(s) 82, 120, 302, 454, 587
BstDEI CTNAG 1 cut(s) 741
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 2 cut(s) 386, 504
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNI CCWGG 2 cut(s) 32, 105
BstNSI RCATGY 2 cut(s) 122, 264
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 5 cut(s) 30, 103, 304, 305, 521
BstV1I GCAGC 1 cut(s) 322
BsuRI GGCC 4 cut(s) 108, 204, 600, 759
BtsCI GGATG 2 cut(s) 386, 504
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 5 cut(s) 82, 120, 302, 454, 587
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 107, 598
Cfr9I CCCGGG 1 cut(s) 305
CseI GACGC 1 cut(s) 723
Csp6I GTAC 2 cut(s) 445, 461
CviAII CATG 8 cut(s) 71, 119, 125, 261, 323, 602, 664, 726
CviQI GTAC 2 cut(s) 445, 461
DdeI CTNAG 1 cut(s) 741
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
DraIII CACNNNGTG 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 110
Eco32I GATATC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 673
Eco72I CACGTG 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 30, 103
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 8 cut(s) 74, 122, 128, 264, 326, 605, 667, 729
FatI CATG 8 cut(s) 70, 118, 124, 260, 322, 601, 663, 725
Fnu4HI GCNGC 2 cut(s) 145, 311
FokI GGATG 2 cut(s) 393, 491
Fsp4HI GCNGC 2 cut(s) 145, 311
GluI GCNGC 2 cut(s) 145, 311
HaeIII GGCC 4 cut(s) 108, 204, 600, 759
HapII CCGG 4 cut(s) 306, 422, 522, 570
HgaI GACGC 1 cut(s) 723
Hin1I GRCGYC 2 cut(s) 11, 183
Hin1II CATG 8 cut(s) 74, 122, 128, 264, 326, 605, 667, 729
HinfI GANTC 4 cut(s) 284, 510, 526, 677
HpaII CCGG 4 cut(s) 306, 422, 522, 570
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 7 cut(s) 101, 509, 645, 684, 692, 744, 785
Hpy188III TCNNGA 3 cut(s) 150, 191, 514
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 2 cut(s) 185, 188
HpyAV CCTTC 6 cut(s) 134, 188, 371, 589, 697, 764
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 3 cut(s) 183, 397, 558
HpyCH4V TGCA 6 cut(s) 260, 300, 387, 392, 440, 589
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 3 cut(s) 183, 397, 558
Hsp92I GRCGYC 2 cut(s) 11, 183
Hsp92II CATG 8 cut(s) 74, 122, 128, 264, 326, 605, 667, 729
Kzo9I GATC 1 cut(s) 152
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 2 cut(s) 513, 649
MaeII ACGT 3 cut(s) 183, 397, 558
MaeIII GTNAC 6 cut(s) 60, 73, 173, 263, 325, 368
MalI GATC 1 cut(s) 154
MbiI CCGCTC 1 cut(s) 80
MboI GATC 1 cut(s) 152
MboII GAAGA 2 cut(s) 44, 311
MhlI GDGCHC 1 cut(s) 405
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 1 cut(s) 352
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 2 cut(s) 278, 686
MnlI CCTC 9 cut(s) 38, 215, 371, 440, 491, 494, 557, 639, 750
Mox20I TGGCCA 1 cut(s) 759
MscI TGGCCA 1 cut(s) 759
MslI CAYNNNNRTG 2 cut(s) 123, 295
Msp20I TGGCCA 1 cut(s) 759
MspI CCGG 4 cut(s) 306, 422, 522, 570
MspR9I CCNGG 5 cut(s) 32, 105, 306, 307, 523
MvaI CCWGG 2 cut(s) 32, 105
MwoI GCNNNNNNNGC 1 cut(s) 310
NciI CCSGG 3 cut(s) 306, 307, 523
NdeII GATC 1 cut(s) 152
NlaIII CATG 8 cut(s) 74, 122, 128, 264, 326, 605, 667, 729
NlaIV GGNNCC 2 cut(s) 483, 568
NmuCI GTSAC 2 cut(s) 73, 368
NspI RCATGY 2 cut(s) 122, 264
OliI CACNNNNGTG 1 cut(s) 295
PaeI GCATGC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 510, 526
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 2 cut(s) 146, 312
PleI GAGTC 2 cut(s) 278, 685
PmaCI CACGTG 1 cut(s) 398
PmlI CACGTG 1 cut(s) 398
PpsI GAGTC 2 cut(s) 278, 685
Ppu21I YACGTR 1 cut(s) 398
PsiI TTATAA 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 30, 103
PspCI CACGTG 1 cut(s) 398
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 2 cut(s) 30, 103
PspN4I GGNNCC 2 cut(s) 483, 568
PspPI GGNCC 2 cut(s) 107, 598
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 2 cut(s) 446, 462
RsaNI GTAC 2 cut(s) 445, 461
RseI CAYNNNNRTG 2 cut(s) 123, 295
SatI GCNGC 2 cut(s) 145, 311
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 2 cut(s) 107, 598
SchI GAGTC 2 cut(s) 278, 686
ScrFI CCNGG 5 cut(s) 32, 105, 306, 307, 523
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 2 cut(s) 513, 649
SmaI CCCGGG 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 123, 295
SphI GCATGC 1 cut(s) 122
SrfI GCCCGGGC 1 cut(s) 307
Sse9I AATT 1 cut(s) 352
SsiI CCGC 3 cut(s) 78, 144, 475
StyD4I CCNGG 5 cut(s) 30, 103, 304, 305, 521
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 3 cut(s) 186, 400, 561
TaqI TCGA 2 cut(s) 207, 408
TasI AATT 1 cut(s) 352
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 2 cut(s) 510, 526
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 73, 368
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 2 cut(s) 73, 368
TspDTI ATGAA 6 cut(s) 27, 37, 311, 555, 641, 714
TspGWI ACGGA 1 cut(s) 474
TspMI CCCGGG 1 cut(s) 305
TspRI CASTG 1 cut(s) 373
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 280
XceI RCATGY 2 cut(s) 122, 264
XmaI CCCGGG 1 cut(s) 305
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.