Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Forward (+)

16677965 .. 16680078

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1105400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCCATGCCAATGTCCTCACCGAGTGCCAACGCCATGACAATGAAGGCATTGCCTTTGCGAGCCCTCCTGGGGCCAATCCTGCTATGTCTTCTTCTTCTCCCTGACCATGTTCATGTCTCTGCTGCCGACCGTGTGCTTCTTAAAGCCGAGCAGGATCACGATAGGGTTGGGCCAAAGTTCAAGCCTGGCCCTTGGAAGCATGCTCATGCCACATGCTACGAAGGAGGCTCTGGAACCTTTGGTGGAGCTTGTGGTTACCATGATGTTGTTAAAGAAGGTTATGGCCTCAAAACTGTAGCACTAAGCGATGCACTGTTCAACAAAGGGCAGTCGTGTGGTGCATGCTTCGAAATCAGATGTGTAGACTCACCCCAATGGTGCAAGCCCGGGCAGCCAGTTGTGTCAGTCACAGCAACAAACCACTGCCCTCCAAACTACAACCTCCCAAGTGACAATGGAGGATGGTGCAATTCGCCACGCGAGCATTTCGATATAGCCAAGCCCATCTTCCTCCAGATTGCTGAGTACAAGGCTGGCATTGTCCCAGTTGAATATCGAAGAGTGCCATGCAAAAAACAAGGAGGCATTCGGTTCACAATAACTGGGAATCCTTATTTCAATGAAGTGATGGTTTGGAATGTCGGAGGCTCTGGGGATGTAACAAGTGTCGAAGTGAAGGGTGACGGCAAGCTTCCATGGACGCCGTTGAAGCGAATGTGGGGTCAGAGGTGGACCACCGATGCTAAGCTTGTTGGGGAGTCATTGACATTTAGGGTTGGTGAGAGTGATGGAAGAACCATTACTTCAGTGAATATTGCCCCTAAGAATTGGCAGTTTGGTCAGACCTACGAGGGCAAGAACTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

291

Amino Acids

31.71

Weight (kDa)

8.62

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	71 - 193	2.7e-07	EXPB1-like domain 1
DPBB_1	PF03330	99 - 186	4.3e-19	Lytic transglycolase
Expansin_C	PF01357	197 - 275	1.3e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	1 cut(s)	483
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	792
AcyI	GRCGYC	1 cut(s)	704
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	5 cut(s)	184, 322, 554, 622, 712
AjnI	CCWGG	2 cut(s)	69, 187
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	3 cut(s)	251, 694, 751
AluI	AGCT	3 cut(s)	251, 694, 751
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	5 cut(s)	3, 74, 173, 190, 286
ApeKI	GCWGC	2 cut(s)	125, 394
ArsI	GACNNNNNNTTYG	2 cut(s)	709, 741
AspS9I	GGNCC	4 cut(s)	74, 173, 191, 735
AsuC2I	CCSGG	2 cut(s)	390, 391
AsuHPI	GGTGA	4 cut(s)	12, 363, 695, 794
AsuII	TTCGAA	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	787, 819
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	112, 406
BccI	CCATC	4 cut(s)	459, 515, 625, 785
BceAI	ACGGC	2 cut(s)	691, 703
BcgI	CGANNNNNNTGC	1 cut(s)	847
BciT130I	CCWGG	2 cut(s)	71, 189
BcnI	CCSGG	2 cut(s)	390, 391
BcoDI	GTCTC	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	2 cut(s)	126, 395
BlpI	GCTNAGC	1 cut(s)	747
BlsI	GCNGC	2 cut(s)	127, 396
Bme1390I	CCNGG	4 cut(s)	71, 189, 390, 391
Bme18I	GGWCC	1 cut(s)	735
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	4 cut(s)	74, 173, 191, 735
BmiI	GGNNCC	2 cut(s)	75, 238
BmrFI	CCNGG	4 cut(s)	71, 189, 390, 391
BmrI	ACTGGG	2 cut(s)	542, 615
BmsI	GCATC	2 cut(s)	301, 733
BmuI	ACTGGG	2 cut(s)	542, 615
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	351
BpuMI	CCSGG	2 cut(s)	390, 391
BsaHI	GRCGYC	1 cut(s)	704
BsaJI	CCNNGG	4 cut(s)	70, 194, 389, 698
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	3 cut(s)	398, 548, 610
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	71, 189
BseDI	CCNNGG	4 cut(s)	70, 194, 389, 698
BseGI	GGATG	2 cut(s)	470, 664
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	3 cut(s)	398, 548, 610
BseXI	GCAGC	2 cut(s)	112, 406
Bsh1236I	CGCG	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	5 cut(s)	5, 76, 175, 192, 288
BsiEI	CGRYCG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	5 cut(s)	5, 76, 175, 192, 288
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	157
Bsp1720I	GCTNAGC	1 cut(s)	747
Bsp19I	CCATGG	1 cut(s)	698
BspANI	GGCC	5 cut(s)	5, 76, 175, 192, 288
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	75, 238
BspPI	GGATC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	398, 548, 610
BssECI	CCNNGG	4 cut(s)	70, 194, 389, 698
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	704
BssT1I	CCWWGG	2 cut(s)	194, 698
Bst2UI	CCWGG	2 cut(s)	71, 189
Bst4CI	ACNGT	3 cut(s)	134, 298, 318
Bst6I	CTCTTC	1 cut(s)	556
BstACI	GRCGYC	1 cut(s)	704
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	7 cut(s)	63, 204, 346, 386, 485, 538, 692
BstDEI	CTNAG	4 cut(s)	305, 525, 747, 825
BstDSI	CCRYGG	1 cut(s)	698
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	470, 664
BstFNI	CGCG	1 cut(s)	483
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	157
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 394, 484, 712
BstNI	CCWGG	2 cut(s)	71, 189
BstNSI	RCATGY	3 cut(s)	206, 219, 348
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	69, 187, 388, 389
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	112, 406
BstV2I	GAAGAC	1 cut(s)	83
BsuRI	GGCC	5 cut(s)	5, 76, 175, 192, 288
BtgI	CCRYGG	1 cut(s)	698
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	470, 664
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	3 cut(s)	314, 424, 816
Cac8I	GCNNGC	7 cut(s)	63, 204, 346, 386, 485, 538, 692
Cfr13I	GGNCC	4 cut(s)	74, 173, 191, 735
Cfr9I	CCCGGG	1 cut(s)	389
CseI	GACGC	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	529
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	305, 525, 747, 825
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraIII	CACNNNGTG	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
Eco130I	CCWWGG	2 cut(s)	194, 698
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	735
Eco57I	CTGAAG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	69, 187
EcoT14I	CCWWGG	2 cut(s)	194, 698
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	194, 698
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	1 cut(s)	530
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	126, 395
FokI	GGATG	2 cut(s)	477, 671
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	2 cut(s)	126, 395
GluI	GCNGC	2 cut(s)	126, 395
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	5 cut(s)	5, 76, 175, 192, 288
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	712
Hin1I	GRCGYC	1 cut(s)	704
HindIII	AAGCTT	2 cut(s)	692, 749
HinfI	GANTC	3 cut(s)	368, 610, 761
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	4 cut(s)	12, 363, 695, 794
Hpy166II	GTNNAC	3 cut(s)	367, 597, 735
Hpy188I	TCNGA	4 cut(s)	359, 647, 729, 846
Hpy188III	TCNNGA	3 cut(s)	161, 234, 517
Hpy8I	GTNNAC	3 cut(s)	367, 597, 735
HpyAV	CCTTC	4 cut(s)	40, 218, 272, 673
HpyCH4III	ACNGT	3 cut(s)	134, 298, 318
HpyCH4V	TGCA	5 cut(s)	314, 344, 384, 471, 573
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 394, 484, 712
HpyF3I	CTNAG	4 cut(s)	305, 525, 747, 825
Hsp92I	GRCGYC	1 cut(s)	704
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	2 cut(s)	112, 406
LweI	GCATC	2 cut(s)	301, 733
MaeIII	GTNAC	5 cut(s)	257, 409, 452, 661, 683
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	6 cut(s)	83, 86, 89, 502, 573, 807
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	472, 829
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	362, 770
MmeI	TCCRAC	1 cut(s)	625
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	144, 273
MslI	CAYNNNNRTG	5 cut(s)	11, 41, 114, 207, 376
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	4 cut(s)	71, 189, 390, 391
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	2 cut(s)	71, 189
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	82, 394, 484, 712
NciI	CCSGG	2 cut(s)	390, 391
NcoI	CCATGG	1 cut(s)	698
NdeII	GATC	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	75, 238
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	3 cut(s)	409, 452, 683
NspI	RCATGY	3 cut(s)	206, 219, 348
NspV	TTCGAA	1 cut(s)	351
PaeI	GCATGC	2 cut(s)	206, 348
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	2 cut(s)	127, 396
PleI	GAGTC	2 cut(s)	362, 769
PpsI	GAGTC	2 cut(s)	362, 769
Psp6I	CCWGG	2 cut(s)	69, 187
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	69, 187
PspN4I	GGNNCC	2 cut(s)	75, 238
PspPI	GGNCC	4 cut(s)	74, 173, 191, 735
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	5 cut(s)	11, 41, 114, 207, 376
SaqAI	TTAA	2 cut(s)	144, 273
SatI	GCNGC	2 cut(s)	126, 395
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	4 cut(s)	74, 173, 191, 735
SchI	GAGTC	2 cut(s)	362, 770
ScrFI	CCNGG	4 cut(s)	71, 189, 390, 391
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	8 cut(s)	242, 253, 283, 447, 696, 734, 753, 851
SfaNI	GCATC	2 cut(s)	301, 733
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	351
SinI	GGWCC	1 cut(s)	735
SmaI	CCCGGG	1 cut(s)	391
SmiMI	CAYNNNNRTG	5 cut(s)	11, 41, 114, 207, 376
SphI	GCATGC	2 cut(s)	206, 348
SrfI	GCCCGGGC	1 cut(s)	391
Sse9I	AATT	2 cut(s)	472, 829
SspI	AATATT	1 cut(s)	817
StyD4I	CCNGG	4 cut(s)	69, 187, 388, 389
StyI	CCWWGG	2 cut(s)	194, 698
TaaI	ACNGT	3 cut(s)	134, 298, 318
TaqI	TCGA	5 cut(s)	351, 492, 559, 672, 867
TasI	AATT	2 cut(s)	472, 829
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	144, 273
Tru9I	TTAA	2 cut(s)	144, 273
TscAI	CASTG	3 cut(s)	321, 431, 816
TseFI	GTSAC	3 cut(s)	409, 452, 683
TseI	GCWGC	2 cut(s)	125, 394
Tsp45I	GTSAC	3 cut(s)	409, 452, 683
TspDTI	ATGAA	3 cut(s)	59, 104, 639
TspMI	CCCGGG	1 cut(s)	389
TspRI	CASTG	3 cut(s)	321, 431, 816
VpaK11BI	GGWCC	1 cut(s)	735
XceI	RCATGY	3 cut(s)	206, 219, 348
XmaI	CCCGGG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.