Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Forward (+)

14700446 .. 14702517

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCCATGCCAATGTCGTCACTGAGTGCAAAAGCCATGACAATGAAGACATTGCAAGCCCTCTTGGGGTCATTGCTGCTCTTTCTTCTTCTGCTACCTGACCATGTCCAAGTCTTTGCTGCTAACCGTGTACTTCTTGGCGCCAAGGAGGAGCACGATGAGGATGGGCCAAGGTTCAAGCCCAGCCCTTGGAAGCGTGCTCATGCCACATTCTATGAAGGAGGCTCCGGAACCTTTGGTGGAGCTTGTGGTTACCATGACGTTGTTAAAGAAGGCTATGGCCTAGAAACCGTAGCATTAAGCGATGCATTGTTTAACAAAGGACAGTCATGTGGTTCATGTTTTGAAATCAAATGTGTAGACTCGCCTCAATGGTGCAAACCCGGGCAGCCAGTTCTCGCAGTCACAGCAACAAACCACTGCCCACCAAATTGGAATCAGCCTAGTGACAATGGAGGATGGTGCAATCCTCCACGCGAGCATTTCGACATAGCCAAGCCTGTCTTCCTCAATATTGTTGCCCAGCACAAGGCCGGCATCGTGCCGGTAGAATACCGAAGAGTTCCATGCAAGAAGAAAGGAGGAATTAGGTTTACAATAACTGGGAACCCTTATTTCCATGAAGTGTTGGTTTGGAATGCGGCTGGCTCTGGGGATGTGACAAGTGTGGAAGTGAAGGGTGGGAAGCTTCAATGGACGCCGCTGGAGCGAATGTGGGGTCAGAGGTGGGTCACTGGTGCTAAGCTTTCTGGGGAGGCACTGACATTTAGGGTTGGAGAGAGTGATGGGAGAACCATAACCTCTGTGAATGTTGCCCCCAAGAATTGGCAGTTTGGCCAGACCTACGAAGGCAAGAACTTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

289

Amino Acids

31.55

Weight (kDa)

8.57

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccB7I	CCANNNNNTGG	2 cut(s)	189, 825
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	477
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	2 cut(s)	641, 701
AcoI	YGGCCR	2 cut(s)	3, 835
AcyI	GRCGYC	2 cut(s)	141, 698
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	4 cut(s)	66, 189, 529, 825
AgsI	TTSAA	3 cut(s)	178, 347, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	3 cut(s)	245, 688, 745
AluI	AGCT	3 cut(s)	245, 688, 745
Alw21I	GWGCWC	2 cut(s)	156, 202
Ama87I	CYCGRG	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	227
AoxI	GGCC	5 cut(s)	3, 167, 280, 531, 835
ApeKI	GCWGC	3 cut(s)	76, 119, 388
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	2 cut(s)	384, 385
AvaI	CYCGRG	1 cut(s)	383
BalI	TGGCCA	2 cut(s)	5, 837
BanI	GGYRCC	1 cut(s)	140
BbsI	GAAGAC	2 cut(s)	53, 496
Bbv12I	GWGCWC	2 cut(s)	156, 202
BbvI	GCAGC	3 cut(s)	63, 106, 400
BccI	CCATC	3 cut(s)	158, 453, 779
BcgI	CGANNNNNNTGC	1 cut(s)	841
BcnI	CCSGG	2 cut(s)	384, 385
BfaI	CTAG	3 cut(s)	284, 444, 865
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	5 cut(s)	77, 120, 389, 642, 701
BlpI	GCTNAGC	1 cut(s)	741
BlsI	GCNGC	5 cut(s)	78, 121, 390, 643, 702
Bme1390I	CCNGG	2 cut(s)	384, 385
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	4 cut(s)	142, 226, 232, 608
BmrFI	CCNGG	2 cut(s)	384, 385
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	2 cut(s)	295, 546
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	2 cut(s)	53, 496
BpmI	CTGGAG	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuMI	CCSGG	2 cut(s)	384, 385
BsaHI	GRCGYC	2 cut(s)	141, 698
BsaJI	CCNNGG	4 cut(s)	144, 170, 188, 383
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	698, 728
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 189, 529, 825
Bse118I	RCCGGY	2 cut(s)	533, 544
Bse1I	ACTGG	3 cut(s)	392, 607, 739
Bse3DI	GCAATG	2 cut(s)	50, 71
BseAI	TCCGGA	1 cut(s)	227
BseDI	CCNNGG	4 cut(s)	144, 170, 188, 383
BseGI	GGATG	3 cut(s)	169, 464, 661
BseLI	CCNNNNNNNGG	4 cut(s)	66, 189, 529, 825
BseMI	GCAATG	2 cut(s)	50, 71
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	3 cut(s)	392, 607, 739
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	63, 106, 400
BseYI	CCCAGC	2 cut(s)	182, 522
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	5 cut(s)	5, 169, 282, 533, 837
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	156, 202
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	4 cut(s)	228, 384, 534, 545
BslI	CCNNNNNNNGG	4 cut(s)	66, 189, 529, 825
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	5 cut(s)	5, 169, 282, 533, 837
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	156, 202
Bsp13I	TCCGGA	1 cut(s)	227
Bsp1720I	GCTNAGC	1 cut(s)	741
BspACI	CCGC	2 cut(s)	641, 701
BspANI	GGCC	5 cut(s)	5, 169, 282, 533, 837
BspCNI	CTCAG	1 cut(s)	15
BspEI	TCCGGA	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	4 cut(s)	142, 226, 232, 608
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	50, 71
BsrFI	RCCGGY	2 cut(s)	533, 544
BsrI	ACTGG	3 cut(s)	392, 607, 739
BssAI	RCCGGY	2 cut(s)	533, 544
BssECI	CCNNGG	4 cut(s)	144, 170, 188, 383
BssNI	GRCGYC	2 cut(s)	141, 698
BssT1I	CCWWGG	3 cut(s)	144, 170, 188
Bst4CI	ACNGT	3 cut(s)	128, 292, 327
Bst6I	CTCTTC	1 cut(s)	553
BstACI	GRCGYC	2 cut(s)	141, 698
BstC8I	GCNNGC	5 cut(s)	57, 198, 479, 535, 646
BstDEI	CTNAG	2 cut(s)	23, 741
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	3 cut(s)	169, 464, 661
BstFNI	CGCG	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 706
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	382, 383
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	63, 106, 400
BstV2I	GAAGAC	2 cut(s)	53, 496
BstXI	CCANNNNNNTGG	1 cut(s)	432
BsuRI	GGCC	5 cut(s)	5, 169, 282, 533, 837
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	169, 464, 661
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	4 cut(s)	20, 418, 732, 758
Cac8I	GCNNGC	5 cut(s)	57, 198, 479, 535, 646
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	2 cut(s)	533, 544
Cfr13I	GGNCC	1 cut(s)	167
Cfr9I	CCCGGG	1 cut(s)	383
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	9 cut(s)	7, 37, 104, 203, 257, 330, 339, 567, 620
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	2 cut(s)	23, 741
DinI	GGCGCC	1 cut(s)	142
DraIII	CACNNNGTG	1 cut(s)	26
EaeI	YGGCCR	2 cut(s)	3, 835
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco130I	CCWWGG	3 cut(s)	144, 170, 188
Eco88I	CYCGRG	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoT14I	CCWWGG	3 cut(s)	144, 170, 188
EcoT22I	ATGCAT	1 cut(s)	310
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	3 cut(s)	144, 170, 188
FaeI	CATG	9 cut(s)	10, 40, 107, 206, 260, 333, 342, 570, 623
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FatI	CATG	9 cut(s)	6, 36, 103, 202, 256, 329, 338, 566, 619
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	77, 120, 389, 642, 701
FokI	GGATG	3 cut(s)	176, 471, 668
Fsp4HI	GCNGC	5 cut(s)	77, 120, 389, 642, 701
FspBI	CTAG	3 cut(s)	284, 444, 865
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	5 cut(s)	77, 120, 389, 642, 701
GsaI	CCCAGC	2 cut(s)	186, 526
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	5 cut(s)	5, 169, 282, 533, 837
HapII	CCGG	4 cut(s)	228, 384, 534, 545
HgaI	GACGC	1 cut(s)	706
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	2 cut(s)	141, 698
Hin1II	CATG	9 cut(s)	10, 40, 107, 206, 260, 333, 342, 570, 623
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	2 cut(s)	686, 743
HinfI	GANTC	2 cut(s)	362, 436
HpaII	CCGG	4 cut(s)	228, 384, 534, 545
Hpy166II	GTNNAC	3 cut(s)	131, 361, 594
Hpy188I	TCNGA	1 cut(s)	723
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	3 cut(s)	131, 361, 594
HpyAV	CCTTC	4 cut(s)	212, 266, 670, 842
HpyCH4III	ACNGT	3 cut(s)	128, 292, 327
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	6 cut(s)	29, 55, 308, 378, 465, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 706
HpyF3I	CTNAG	2 cut(s)	23, 741
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	2 cut(s)	141, 698
Hsp92II	CATG	9 cut(s)	10, 40, 107, 206, 260, 333, 342, 570, 623
HspAI	GCGC	1 cut(s)	141
KasI	GGCGCC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	533
KroNI	GCCGGC	1 cut(s)	535
LmnI	GCTCC	4 cut(s)	151, 230, 242, 706
Lsp1109I	GCAGC	3 cut(s)	63, 106, 400
LweI	GCATC	2 cut(s)	295, 546
MaeI	CTAG	3 cut(s)	284, 444, 865
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	6 cut(s)	18, 251, 403, 446, 658, 730
MboII	GAAGA	6 cut(s)	58, 77, 80, 496, 570, 586
MhlI	GDGCHC	2 cut(s)	156, 202
MlsI	TGGCCA	2 cut(s)	5, 837
MluCI	AATT	3 cut(s)	430, 585, 823
MluNI	TGGCCA	2 cut(s)	5, 837
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	754
Mox20I	TGGCCA	2 cut(s)	5, 837
Mph1103I	ATGCAT	1 cut(s)	310
MroI	TCCGGA	1 cut(s)	227
MroNI	GCCGGC	1 cut(s)	533
MscI	TGGCCA	2 cut(s)	5, 837
MseI	TTAA	3 cut(s)	267, 299, 315
MslI	CAYNNNNRTG	2 cut(s)	11, 41
Msp20I	TGGCCA	2 cut(s)	5, 837
MspA1I	CMGCKG	1 cut(s)	703
MspI	CCGG	4 cut(s)	228, 384, 534, 545
MspR9I	CCNGG	2 cut(s)	384, 385
Mva1269I	GAATGC	1 cut(s)	643
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	407, 706
NaeI	GCCGGC	1 cut(s)	535
NarI	GGCGCC	1 cut(s)	141
NciI	CCSGG	2 cut(s)	384, 385
NgoMIV	GCCGGC	1 cut(s)	533
NlaIII	CATG	9 cut(s)	10, 40, 107, 206, 260, 333, 342, 570, 623
NlaIV	GGNNCC	4 cut(s)	142, 226, 232, 608
NmuCI	GTSAC	5 cut(s)	18, 403, 446, 658, 730
NsiI	ATGCAT	1 cut(s)	310
PctI	GAATGC	1 cut(s)	643
PdiI	GCCGGC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	436
PflFI	GACNNNGTC	1 cut(s)	104
PflMI	CCANNNNNTGG	2 cut(s)	189, 825
PkrI	GCNGC	5 cut(s)	78, 121, 390, 643, 702
PleI	GAGTC	1 cut(s)	356
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	356
PspEI	GGTNACC	1 cut(s)	251
PspFI	CCCAGC	2 cut(s)	182, 522
PspN4I	GGNNCC	4 cut(s)	142, 226, 232, 608
PspPI	GGNCC	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	2 cut(s)	11, 41
SaqAI	TTAA	3 cut(s)	267, 299, 315
SatI	GCNGC	5 cut(s)	77, 120, 389, 642, 701
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	384, 385
SduI	GDGCHC	2 cut(s)	156, 202
SfaNI	GCATC	2 cut(s)	295, 546
SfoI	GGCGCC	1 cut(s)	142
SmaI	CCCGGG	1 cut(s)	385
SmiMI	CAYNNNNRTG	2 cut(s)	11, 41
Sse9I	AATT	3 cut(s)	430, 585, 823
SsiI	CCGC	2 cut(s)	641, 701
SspDI	GGCGCC	1 cut(s)	140
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	3 cut(s)	284, 444, 865
StyD4I	CCNGG	2 cut(s)	382, 383
StyI	CCWWGG	3 cut(s)	144, 170, 188
TaaI	ACNGT	3 cut(s)	128, 292, 327
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	486, 861
TasI	AATT	3 cut(s)	430, 585, 823
TatI	WGTACW	1 cut(s)	130
TauI	GCSGC	2 cut(s)	644, 703
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	3 cut(s)	267, 299, 315
Tru9I	TTAA	3 cut(s)	267, 299, 315
TscAI	CASTG	4 cut(s)	27, 425, 739, 765
TseFI	GTSAC	5 cut(s)	18, 403, 446, 658, 730
TseI	GCWGC	3 cut(s)	76, 119, 388
Tsp45I	GTSAC	5 cut(s)	18, 403, 446, 658, 730
TspDTI	ATGAA	4 cut(s)	59, 231, 327, 636
TspMI	CCCGGG	1 cut(s)	383
TspRI	CASTG	4 cut(s)	27, 425, 739, 765
Tth111I	GACNNNGTC	1 cut(s)	104
Van91I	CCANNNNNTGG	2 cut(s)	189, 825
XmaI	CCCGGG	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	3 cut(s)	284, 444, 865
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.