Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Forward (+)

12625228 .. 12626837

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCAATGTCCTCACCGAGTGCCAACGCCGTGACAATGAAGGCATTGACTTTGCGAGCCCTCCTGGGGCCAATCCTGCTATGTCTTCTTCTCCCTTACCATGTTCATGTCTCTGCTGCCGACCGTGTGCTTCTTGAAGCCAAGCAGGATCACGATAAGGTTGGGCCAAAGTTCAAGCCTGGCCCTTGGAAGCATGCTCATGCCACATGCTACGAAGGAGGCTCCGGAACCTTTGGTGGAGCTTGTGGTTACCATGATGTTGTTAAAGAAGGTTATGGCCTCAAAACTGTAGCACTAAGCGATGCACTGTTCAACAAAGGGCAGTCGTGTGGTGCATGCTTCGAAATCAGATGTGTAGACTCACCCCAATGGTGCAAGCCCGGGCAGCCAGTTGTGTCAGTTACAGCAACAAACCACTGCCCTCCAAACTACAACCTCCCAAGTGACAATGGAGGATGGTGCAATTCGCCACGCGAGCATTTCGATATAGCCAAGCCCATCTTCCTCCAGATTGCTGAGTACAAGGCTGGCATTGTCCCAGTTGAATATCGAAGAGTACCATGCAAAAAAATAGGAGGCATTCGGTTCACAATAACAGGGAATCCTTATTTCAATGAAGTGATGGTTTGGAATGTTGGAGGCTCTGGGGATGTAACAAGTGTCGAAGTGAAAGGTGACGGCAAGCTTCCATGGACGCCGTTGAAGCGAATGTGGGGTCAGAGGTGGACCACCGATGCTAAGCTTGTTGGGGAATCATTGACATTTAGGGTAGGTGAGAGTGATGGAAGAACCATTACTTCAGTGAATATTGCCCCTAAGAATTGGCAGTTTGGTCAGACCTACGAAGGCAAGAACTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

288

Amino Acids

31.37

Weight (kDa)

8.74

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	68 - 190	2.3e-07	EXPB1-like domain 1
DPBB_1	PF03330	96 - 183	4.2e-19	Lytic transglycolase
Expansin_C	PF01357	194 - 272	1.2e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	224
AclWI	GGATC	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	1 cut(s)	695
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	2 cut(s)	521, 558
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	6 cut(s)	137, 175, 313, 545, 613, 703
AjnI	CCWGG	2 cut(s)	63, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	3 cut(s)	242, 685, 742
AluI	AGCT	3 cut(s)	242, 685, 742
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	380
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	4 cut(s)	68, 164, 181, 277
ApeKI	GCWGC	2 cut(s)	116, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	700, 732
AspS9I	GGNCC	4 cut(s)	68, 164, 182, 726
AsuC2I	CCSGG	2 cut(s)	381, 382
AsuHPI	GGTGA	4 cut(s)	6, 354, 686, 785
AsuII	TTCGAA	1 cut(s)	342
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	726
BanII	GRGCYC	1 cut(s)	61
BarI	GAAGNNNNNNTAC	2 cut(s)	778, 810
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	103, 397
BccI	CCATC	4 cut(s)	450, 506, 616, 776
BceAI	ACGGC	3 cut(s)	14, 682, 694
BcgI	CGANNNNNNTGC	1 cut(s)	838
BciT130I	CCWGG	2 cut(s)	65, 180
BcnI	CCSGG	2 cut(s)	381, 382
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	2 cut(s)	117, 386
BlpI	GCTNAGC	1 cut(s)	738
BlsI	GCNGC	2 cut(s)	118, 387
Bme1390I	CCNGG	4 cut(s)	65, 180, 381, 382
Bme18I	GGWCC	1 cut(s)	726
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	4 cut(s)	68, 164, 182, 726
BmiI	GGNNCC	3 cut(s)	69, 223, 229
BmrFI	CCNGG	4 cut(s)	65, 180, 381, 382
BmrI	ACTGGG	1 cut(s)	533
BmsI	GCATC	2 cut(s)	292, 724
BmuI	ACTGGG	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	738
Bpu14I	TTCGAA	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	381, 382
BsaHI	GRCGYC	1 cut(s)	695
BsaJI	CCNNGG	4 cut(s)	64, 185, 380, 689
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	389, 539
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	65, 180
BseDI	CCNNGG	4 cut(s)	64, 185, 380, 689
BseGI	GGATG	2 cut(s)	461, 655
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	389, 539
BseXI	GCAGC	2 cut(s)	103, 397
Bsh1236I	CGCG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	4 cut(s)	70, 166, 183, 279
BsiEI	CGRYCG	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	225, 381
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	4 cut(s)	70, 166, 183, 279
BsoBI	CYCGRG	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	148
Bsp1720I	GCTNAGC	1 cut(s)	738
Bsp19I	CCATGG	1 cut(s)	689
BspANI	GGCC	4 cut(s)	70, 166, 183, 279
BspCNI	CTCAG	1 cut(s)	508
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	69, 223, 229
BspPI	GGATC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	389, 539
BssECI	CCNNGG	4 cut(s)	64, 185, 380, 689
BssMI	GATC	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	695
BssT1I	CCWWGG	2 cut(s)	185, 689
Bst2UI	CCWGG	2 cut(s)	65, 180
Bst4CI	ACNGT	3 cut(s)	125, 289, 309
Bst6I	CTCTTC	1 cut(s)	547
BstACI	GRCGYC	1 cut(s)	695
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	7 cut(s)	57, 195, 337, 377, 476, 529, 683
BstDEI	CTNAG	4 cut(s)	296, 516, 738, 816
BstDSI	CCRYGG	1 cut(s)	689
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	461, 655
BstFNI	CGCG	1 cut(s)	474
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	148
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 385, 475, 703
BstNI	CCWGG	2 cut(s)	65, 180
BstNSI	RCATGY	3 cut(s)	197, 210, 339
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	4 cut(s)	63, 178, 379, 380
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	103, 397
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	4 cut(s)	70, 166, 183, 279
BtgI	CCRYGG	1 cut(s)	689
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	461, 655
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	3 cut(s)	305, 415, 807
Cac8I	GCNNGC	7 cut(s)	57, 195, 337, 377, 476, 529, 683
Cfr13I	GGNCC	4 cut(s)	68, 164, 182, 726
Cfr9I	CCCGGG	1 cut(s)	380
CseI	GACGC	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	520, 557
CviAII	CATG	9 cut(s)	101, 107, 194, 200, 207, 254, 336, 561, 690
CviQI	GTAC	2 cut(s)	520, 557
DdeI	CTNAG	4 cut(s)	296, 516, 738, 816
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DraIII	CACNNNGTG	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	185, 689
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	726
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	63, 178
EcoT14I	CCWWGG	2 cut(s)	185, 689
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	185, 689
FaeI	CATG	9 cut(s)	104, 110, 197, 203, 210, 257, 339, 564, 693
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	9 cut(s)	100, 106, 193, 199, 206, 253, 335, 560, 689
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	117, 386
FokI	GGATG	2 cut(s)	468, 662
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	117, 386
GluI	GCNGC	2 cut(s)	117, 386
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	4 cut(s)	70, 166, 183, 279
HapII	CCGG	2 cut(s)	225, 381
HgaI	GACGC	1 cut(s)	703
Hin1I	GRCGYC	1 cut(s)	695
Hin1II	CATG	9 cut(s)	104, 110, 197, 203, 210, 257, 339, 564, 693
HindIII	AAGCTT	2 cut(s)	683, 740
HinfI	GANTC	3 cut(s)	359, 601, 752
HpaII	CCGG	2 cut(s)	225, 381
HphI	GGTGA	4 cut(s)	6, 354, 686, 785
Hpy166II	GTNNAC	3 cut(s)	358, 588, 726
Hpy188I	TCNGA	3 cut(s)	350, 720, 837
Hpy188III	TCNNGA	4 cut(s)	134, 152, 225, 508
Hpy8I	GTNNAC	3 cut(s)	358, 588, 726
HpyAV	CCTTC	4 cut(s)	34, 209, 263, 839
HpyCH4III	ACNGT	3 cut(s)	125, 289, 309
HpyCH4V	TGCA	5 cut(s)	305, 335, 375, 462, 564
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 385, 475, 703
HpyF3I	CTNAG	4 cut(s)	296, 516, 738, 816
Hsp92I	GRCGYC	1 cut(s)	695
Hsp92II	CATG	9 cut(s)	104, 110, 197, 203, 210, 257, 339, 564, 693
Kpn2I	TCCGGA	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	227, 239
Lsp1109I	GCAGC	2 cut(s)	103, 397
LweI	GCATC	2 cut(s)	292, 724
MaeIII	GTNAC	6 cut(s)	31, 248, 400, 443, 652, 674
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	5 cut(s)	77, 80, 493, 564, 798
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	2 cut(s)	463, 820
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	616
MroI	TCCGGA	1 cut(s)	224
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	3 cut(s)	105, 198, 367
MspI	CCGG	2 cut(s)	225, 381
MspR9I	CCNGG	4 cut(s)	65, 180, 381, 382
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	2 cut(s)	65, 180
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	4 cut(s)	76, 385, 475, 703
NciI	CCSGG	2 cut(s)	381, 382
NcoI	CCATGG	1 cut(s)	689
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	9 cut(s)	104, 110, 197, 203, 210, 257, 339, 564, 693
NlaIV	GGNNCC	3 cut(s)	69, 223, 229
NmuCI	GTSAC	3 cut(s)	31, 443, 674
NspI	RCATGY	3 cut(s)	197, 210, 339
NspV	TTCGAA	1 cut(s)	342
PaeI	GCATGC	2 cut(s)	197, 339
PctI	GAATGC	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	601, 752
PkrI	GCNGC	2 cut(s)	118, 387
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	63, 178
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	2 cut(s)	63, 178
PspN4I	GGNNCC	3 cut(s)	69, 223, 229
PspPI	GGNCC	4 cut(s)	68, 164, 182, 726
RsaI	GTAC	2 cut(s)	521, 558
RsaNI	GTAC	2 cut(s)	520, 557
RseI	CAYNNNNRTG	3 cut(s)	105, 198, 367
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	117, 386
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	4 cut(s)	68, 164, 182, 726
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	4 cut(s)	65, 180, 381, 382
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	2 cut(s)	292, 724
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	1 cut(s)	726
SmaI	CCCGGG	1 cut(s)	382
SmiMI	CAYNNNNRTG	3 cut(s)	105, 198, 367
SphI	GCATGC	2 cut(s)	197, 339
SrfI	GCCCGGGC	1 cut(s)	382
Sse9I	AATT	2 cut(s)	463, 820
SspI	AATATT	1 cut(s)	808
StyD4I	CCNGG	4 cut(s)	63, 178, 379, 380
StyI	CCWWGG	2 cut(s)	185, 689
TaaI	ACNGT	3 cut(s)	125, 289, 309
TaqI	TCGA	5 cut(s)	342, 483, 550, 663, 858
TasI	AATT	2 cut(s)	463, 820
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	601, 752
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	3 cut(s)	312, 422, 807
TseFI	GTSAC	3 cut(s)	31, 443, 674
TseI	GCWGC	2 cut(s)	116, 385
Tsp45I	GTSAC	3 cut(s)	31, 443, 674
TspDTI	ATGAA	3 cut(s)	53, 95, 630
TspMI	CCCGGG	1 cut(s)	380
TspRI	CASTG	3 cut(s)	312, 422, 807
VpaK11BI	GGWCC	1 cut(s)	726
XceI	RCATGY	3 cut(s)	197, 210, 339
XmaI	CCCGGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.