Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004238

Physical Location & Seq

Genomic Coordinates Forward (+)

33347728 .. 33348838

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024232

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCAATGGCGTCAATGAGTTCTGCCCTCCTGGGTTCATTGCTTTTCATTCTTCTCGTGTTACCTGACCATGTCACCGCTCGCCATAAGCCAAAGTTCAGACCTGGCCCTTGGAAGCATGCTCATGCCACATTCTACGAAGGCGGCTCTGGATCATTTGGTGGTGCTTGTGGTTACCACGACGTCGTTCAAGAAGGCTATGGCCTCGACACGGTGGCTTTGAGCGACACCTTGTTCAACAATGGGCAGTCGTGTGGTGCATGTTACGATATCCAATGTGTGGACTCCCCACAATGGTGCAAGCCCGGGCAGCCAACTCTTCATGTTACAGCAACCAACCATTGCCCCCCGAATTATAACCTTCCCAGTGACAATGGTGGATGGTGCAATGCACCACGTGAGCACTTCGATATAGCCAAGCCGGTGTTCCTCAACATTGCTGAGTACAAGGCTGGCATAGTACCAATCATATACCGCAGGGTTCCGTGCCAAAAGAGAGGGGGCATCCGATTCACGATAACCGGGAATCCTTACTTCAATGAAGTGTTGGTGTGGAACGTGGGAGGTGCCGGAGACGTGATAAGCGTGCAAGTGAAGGGCCATGACAAGCTCAAATGGACAACGATGAAGCGAATGTGGGGTCAGAGGTGGATTACTGATGCCAGGTTGGTTGGGGAGTCTCTGACCTTCAGAGTTGAAGCAAGTGATAAAAGACGCTCAACTTCTTGGCATATAGTCCCTCAGAACTGGCAGTTTGGCCAGACCTTTGAAGGCAAAAACTTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

263

Amino Acids

29.23

Weight (kDa)

9.01

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	43 - 164	4.3e-06	EXPB1-like domain 1
DPBB_1	PF03330	71 - 158	9.7e-18	Lytic transglycolase
Expansin_C	PF01357	169 - 247	4.9e-24	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004238)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16910 FvH4_6g16920
malus_domestica	MD12G1105000.v1.1 MD12G1105400.v1.1 MD12G1105900.v1.1 MD12G1106100.v1.1 MD12G1115700.v1.1
prunus_persica	Prupe.1G516600_v2.0.a1 Prupe.1G516700_v2.0.a1 Prupe.7G124900_v2.0.a1 Prupe.7G125000_v2.0.a1
pyrus_communis	pycom12g10340 pycom12g10620 pycom12g10630 pycom12g11520
rosa_chinensis	RchiOBHm_Chr3g0470931 RchiOBHm_Chr3g0470961
rosa_laevigata	RLG00000024229 RLG00000024232
rosa_multiflora	Rmu_sc0005264.1_g000004
rosa_roxburghii	Rroxscaffold_6G00410380 Rroxscaffold_6G00410400
rosa_rugosa	Rorug03G0114000 Rorug03G0114200
rosa_samantha	Rh3AG163700 Rh3AG163900 Rh3BG189200 Rh3BG189500 Rh3CG179200 Rh3CG179400 Rh3DG186700 Rh3DG187000
rosa_wichuraiana	Rw3G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AatII	GACGTC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	3 cut(s)	78, 144, 475
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	757
AcuI	CTGAAG	1 cut(s)	673
AcvI	CACGTG	1 cut(s)	398
AcyI	GRCGYC	2 cut(s)	11, 183
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	446, 462
AfiI	CCNNNNNNNGG	3 cut(s)	211, 280, 294
AgsI	TTSAA	5 cut(s)	191, 238, 538, 698, 770
AjiI	CACGTC	1 cut(s)	577
AjnI	CCWGG	3 cut(s)	30, 103, 662
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AleI	CACNNNNGTG	1 cut(s)	295
AluBI	AGCT	1 cut(s)	610
AluI	AGCT	1 cut(s)	610
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	2 cut(s)	567, 684
AlwI	GGATC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	106, 202, 598, 757
ApeKI	GCWGC	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	625, 657
AspS9I	GGNCC	2 cut(s)	107, 598
AsuC2I	CCSGG	3 cut(s)	306, 307, 523
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	759
BanI	GGYRCC	1 cut(s)	566
BauI	CACGAG	1 cut(s)	56
BbrPI	CACGTG	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	375
BciT130I	CCWGG	3 cut(s)	32, 105, 664
BcnI	CCSGG	3 cut(s)	306, 307, 523
BcoDI	GTCTC	2 cut(s)	567, 684
BisI	GCNGC	2 cut(s)	145, 311
BlsI	GCNGC	2 cut(s)	146, 312
Bme1390I	CCNGG	6 cut(s)	32, 105, 306, 307, 523, 664
BmeT110I	CYCGRG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	2 cut(s)	107, 598
BmiI	GGNNCC	2 cut(s)	483, 568
BmrFI	CCNGG	6 cut(s)	32, 105, 306, 307, 523, 664
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	513, 649
BmuI	ACTGGG	1 cut(s)	360
BpuMI	CCSGG	3 cut(s)	306, 307, 523
BsaAI	YACGTR	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	11, 183
BsaJI	CCNNGG	3 cut(s)	31, 110, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 280, 294
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	366, 752
Bse3DI	GCAATG	4 cut(s)	38, 340, 394, 435
BseBI	CCWGG	3 cut(s)	32, 105, 664
BseDI	CCNNGG	3 cut(s)	31, 110, 305
BseGI	GGATG	2 cut(s)	386, 504
BseLI	CCNNNNNNNGG	3 cut(s)	211, 280, 294
BseMI	GCAATG	4 cut(s)	38, 340, 394, 435
BseMII	CTCAG	2 cut(s)	432, 755
BseNI	ACTGG	2 cut(s)	366, 752
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	4 cut(s)	108, 204, 600, 759
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	306, 422, 522, 570
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	3 cut(s)	211, 280, 294
BsmAI	GTCTC	2 cut(s)	567, 684
BsmBI	CGTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	4 cut(s)	108, 204, 600, 759
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	152
BspACI	CCGC	3 cut(s)	78, 144, 475
BspANI	GGCC	4 cut(s)	108, 204, 600, 759
BspCNI	CTCAG	2 cut(s)	433, 754
BspLI	GGNNCC	2 cut(s)	483, 568
BspPI	GGATC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	4 cut(s)	38, 340, 394, 435
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	366, 752
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	3 cut(s)	31, 110, 305
BssMI	GATC	1 cut(s)	152
BssNI	GRCGYC	2 cut(s)	11, 183
BssSI	CACGAG	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	56
Bst2UI	CCWGG	3 cut(s)	32, 105, 664
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	2 cut(s)	11, 183
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	5 cut(s)	82, 120, 302, 454, 587
BstDEI	CTNAG	2 cut(s)	441, 741
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	386, 504
BstKTI	GATC	1 cut(s)	155
BstMAI	GTCTC	2 cut(s)	567, 684
BstMBI	GATC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	3 cut(s)	32, 105, 664
BstNSI	RCATGY	2 cut(s)	122, 264
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	6 cut(s)	30, 103, 304, 305, 521, 662
BstV1I	GCAGC	1 cut(s)	322
BsuRI	GGCC	4 cut(s)	108, 204, 600, 759
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	386, 504
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	5 cut(s)	82, 120, 302, 454, 587
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	107, 598
Cfr9I	CCCGGG	1 cut(s)	305
CseI	GACGC	1 cut(s)	723
Csp6I	GTAC	2 cut(s)	445, 461
CviAII	CATG	6 cut(s)	71, 119, 125, 261, 323, 602
CviQI	GTAC	2 cut(s)	445, 461
DdeI	CTNAG	2 cut(s)	441, 741
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
DraIII	CACNNNGTG	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	673
Eco72I	CACGTG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	3 cut(s)	30, 103, 662
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	567
FaeI	CATG	6 cut(s)	74, 122, 128, 264, 326, 605
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	6 cut(s)	70, 118, 124, 260, 322, 601
Fnu4HI	GCNGC	2 cut(s)	145, 311
FokI	GGATG	2 cut(s)	393, 491
Fsp4HI	GCNGC	2 cut(s)	145, 311
GluI	GCNGC	2 cut(s)	145, 311
HaeIII	GGCC	4 cut(s)	108, 204, 600, 759
HapII	CCGG	4 cut(s)	306, 422, 522, 570
HgaI	GACGC	1 cut(s)	723
Hin1I	GRCGYC	2 cut(s)	11, 183
Hin1II	CATG	6 cut(s)	74, 122, 128, 264, 326, 605
HinfI	GANTC	4 cut(s)	284, 510, 526, 677
HpaII	CCGG	4 cut(s)	306, 422, 522, 570
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	7 cut(s)	101, 509, 645, 684, 692, 744, 785
Hpy188III	TCNNGA	3 cut(s)	150, 191, 514
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	2 cut(s)	185, 188
HpyAV	CCTTC	6 cut(s)	134, 188, 371, 589, 697, 764
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	4 cut(s)	183, 397, 558, 576
HpyCH4V	TGCA	5 cut(s)	260, 300, 387, 392, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	441, 741
HpySE526I	ACGT	4 cut(s)	183, 397, 558, 576
Hsp92I	GRCGYC	2 cut(s)	11, 183
Hsp92II	CATG	6 cut(s)	74, 122, 128, 264, 326, 605
Kzo9I	GATC	1 cut(s)	152
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	513, 649
MaeII	ACGT	4 cut(s)	183, 397, 558, 576
MaeIII	GTNAC	6 cut(s)	60, 73, 173, 263, 325, 368
MalI	GATC	1 cut(s)	154
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	1 cut(s)	152
MboII	GAAGA	2 cut(s)	44, 311
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	1 cut(s)	352
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	2 cut(s)	278, 686
MnlI	CCTC	7 cut(s)	38, 215, 440, 491, 557, 639, 750
Mox20I	TGGCCA	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	759
MslI	CAYNNNNRTG	2 cut(s)	123, 295
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	4 cut(s)	306, 422, 522, 570
MspR9I	CCNGG	6 cut(s)	32, 105, 306, 307, 523, 664
MvaI	CCWGG	3 cut(s)	32, 105, 664
MwoI	GCNNNNNNNGC	1 cut(s)	310
NciI	CCSGG	3 cut(s)	306, 307, 523
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	6 cut(s)	74, 122, 128, 264, 326, 605
NlaIV	GGNNCC	2 cut(s)	483, 568
NmuCI	GTSAC	2 cut(s)	73, 368
NspI	RCATGY	2 cut(s)	122, 264
OliI	CACNNNNGTG	1 cut(s)	295
PaeI	GCATGC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	510, 526
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	146, 312
PleI	GAGTC	2 cut(s)	278, 685
PmaCI	CACGTG	1 cut(s)	398
PmlI	CACGTG	1 cut(s)	398
PpsI	GAGTC	2 cut(s)	278, 685
Ppu21I	YACGTR	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	357
Psp6I	CCWGG	3 cut(s)	30, 103, 662
PspCI	CACGTG	1 cut(s)	398
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	3 cut(s)	30, 103, 662
PspN4I	GGNNCC	2 cut(s)	483, 568
PspPI	GGNCC	2 cut(s)	107, 598
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	446, 462
RsaNI	GTAC	2 cut(s)	445, 461
RseI	CAYNNNNRTG	2 cut(s)	123, 295
SatI	GCNGC	2 cut(s)	145, 311
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	2 cut(s)	107, 598
SchI	GAGTC	2 cut(s)	278, 686
ScrFI	CCNGG	6 cut(s)	32, 105, 306, 307, 523, 664
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	2 cut(s)	513, 649
SmaI	CCCGGG	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	123, 295
SphI	GCATGC	1 cut(s)	122
SrfI	GCCCGGGC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	78, 144, 475
StyD4I	CCNGG	6 cut(s)	30, 103, 304, 305, 521, 662
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	4 cut(s)	186, 400, 561, 579
TaqI	TCGA	2 cut(s)	207, 408
TasI	AATT	1 cut(s)	352
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	510, 526
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	73, 368
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	2 cut(s)	73, 368
TspDTI	ATGAA	5 cut(s)	27, 37, 311, 555, 641
TspGWI	ACGGA	1 cut(s)	474
TspMI	CCCGGG	1 cut(s)	305
TspRI	CASTG	1 cut(s)	373
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	280
XceI	RCATGY	2 cut(s)	122, 264
XmaI	CCCGGG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.