Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004544

Physical Location & Seq

Genomic Coordinates Reverse (-)

17359449 .. 17360827

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCAAGTAAAGGACCTCGGCACGACAAAATCATAACAAACTATGATAATGCTTCATTCAGTCGACAATTAACTGTGATTCAGGAGATAGTTACTACGGGAAAGCTATCCAAGCTGGAACACTTTGAAACAGATGAAAAGGTAAAAACAATCAGCTTATTTGAGGAAATATGGGGCGTAGGTCCACCTACTGCACTGAAATTGTTTGAGAAAGGACATCGCACATTAGATGATTTGAAGGATGAAGATTCATTGACACACTCACAGCAGTTGGGGTTAAAATATTATGATGTTATCAAACAGAGGATCCCACGGCATGAGATCAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

111

Amino Acids

12.69

Weight (kDa)

6.51

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_lambd_f	PF10391	53 - 97	4.6e-19	Fingers domain of DNA polymerase lambda

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23350 FvH4_6g44671
malus_domestica	MD07G1310100.v1.1
prunus_persica	Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1
pyrus_communis	pycom07g28220
rosa_chinensis	RchiOBHm_Chr1g0384481 RchiOBHm_Chr3g0484611
rosa_laevigata	RLG00000026038
rosa_multiflora	Rmu_co8409505.1_g000001 Rmu_sc0006005.1_g000002 Rmu_sc0027852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276670 Rroxscaffold_5G00378750 Rroxscaffold_7G00193860
rosa_rugosa	Rorug01G0448000 Rorug01G0448100 Rorug05G0567200
rosa_samantha	Rh1CG444500 Rh2DG337500 Rh2DG481000 Rh3AG228400 Rh7AG441300
rosa_wichuraiana	Rw0G003890 Rw1G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	301, 314
AgsI	TTSAA	2 cut(s)	128, 238
AluBI	AGCT	3 cut(s)	106, 115, 156
AluI	AGCT	3 cut(s)	106, 115, 156
AlwI	GGATC	2 cut(s)	301, 314
AspS9I	GGNCC	2 cut(s)	14, 182
AvaII	GGWCC	2 cut(s)	14, 182
BamHI	GGATCC	1 cut(s)	306
BceAI	ACGGC	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	14, 182
BmgT120I	GGNCC	2 cut(s)	14, 182
BmiI	GGNNCC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	17, 311
BseDI	CCNNGG	2 cut(s)	17, 311
BseGI	GGATG	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	306, 321
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	2 cut(s)	301, 314
BssECI	CCNNGG	2 cut(s)	17, 311
BssMI	GATC	2 cut(s)	306, 321
Bst4CI	ACNGT	1 cut(s)	76
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	309, 324
BstMBI	GATC	2 cut(s)	306, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	14, 182
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	3 cut(s)	106, 115, 156
CviKI_1	RGCY	3 cut(s)	106, 115, 156
DpnI	GATC	2 cut(s)	308, 323
DpnII	GATC	2 cut(s)	306, 321
Eco47I	GGWCC	2 cut(s)	14, 182
EcoO109I	RGGNCCY	1 cut(s)	14
FaeI	CATG	1 cut(s)	320
FaiI	YATR	6 cut(s)	35, 45, 172, 288, 318, 331
FatI	CATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	64
FokI	GGATG	1 cut(s)	254
Hin1II	CATG	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HinfI	GANTC	2 cut(s)	79, 248
Hpy166II	GTNNAC	2 cut(s)	65, 185
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	65, 185
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	320
Kzo9I	GATC	2 cut(s)	306, 321
LpnPI	CCDG	2 cut(s)	68, 101
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	308, 323
MboI	GATC	2 cut(s)	306, 321
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	1 cut(s)	306
MluCI	AATT	2 cut(s)	68, 200
MnlI	CCTC	3 cut(s)	27, 157, 297
MseI	TTAA	2 cut(s)	71, 278
MwoI	GCNNNNNNNGC	1 cut(s)	112
NdeII	GATC	2 cut(s)	306, 321
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	79, 248
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	2 cut(s)	14, 182
PspPPI	RGGWCCY	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	306
SalI	GTCGAC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	71, 278
Sau3AI	GATC	2 cut(s)	306, 321
Sau96I	GGNCC	2 cut(s)	14, 182
SetI	ASST	7 cut(s)	19, 108, 117, 144, 158, 184, 190
SgeI	CNNG	9 cut(s)	18, 30, 35, 95, 111, 124, 128, 324, 329
SinI	GGWCC	2 cut(s)	14, 182
Sse9I	AATT	2 cut(s)	68, 200
SspI	AATATT	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	64
TasI	AATT	2 cut(s)	68, 200
TfiI	GAWTC	2 cut(s)	79, 248
Tru1I	TTAA	2 cut(s)	71, 278
Tru9I	TTAA	2 cut(s)	71, 278
TscAI	CASTG	1 cut(s)	201
TspDTI	ATGAA	4 cut(s)	45, 150, 240, 258
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	14, 182
XmiI	GTMKAC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.