Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006005.1

Orthogroup ID

OG0004544

Physical Location & Seq

Genomic Coordinates Forward (+)

1191 .. 4357

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006005.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgagactcctccgattacttcatcgcagcagcgtgcgggaattttgtggtggtctgaattggggtttggcgggaagaggtgtaattgtaaaggacaaagctttccaaaatttgaactcctcgcaactctatctccatggcgcaacagttgcagaatcactgtctggacttgcggtttatgttagaggaaatgtcaccggagaagctcgtaaaatttccaagccgcagtttggcaaaattttaaaacaggcacgtttgctctttctcttgttctctctttgcttagttaccaatcacatatcatccatgtcaaacatatatgtccatgatggggcagttggttcatcactcaaagctggtgcgaaagttcgcgttatacgtgatagcccatctgctgtattgtcactttccagcattctctgggggacacccacccgtgcagtctctcatgattctcgtcctttaacagtttatgtggctacttctataagtccagacattggagacattattggccttgaattgaaaggagataatgcacttatagctgctgatgttgagcgttcttcacttgttttatgtggcaatgccttctcagattcaaatgcaactaaacaagcactagctgccttgtctggacctgttatatttgcccgaagaggccttcccctgtctgcaaggcttttagtttttggtgattctgtgcttcttttatttgcaccagaagataccattaaggtgtgtggagatctgttggtgccaggagatataggtgttattctttcttctgaaggtgttgccccattgtttcaaactggaagctctggtagctcaaatctattcaagttgccagttgctgtagtccttgcaacttttgacagcagttctggtgttataccttctgtatcaaagcttgcacctggccaggcagcttatcacttcctggctggttatcaaaatgggaagttcatgcctgcatacagcaaaggcccttcatctattgacctgttggaactagcaaaggagtttctgttgaagttgaaagatgaccggatctcatcctacctggttaatgccaatggaggagaaaagggtgcaactggcaaagattttgctcggttggtggaatcaactctgtcaaataacatcccaccgttccaagcaaaaggtgggaatcttcaagacacatacaagagcttcttatccagcagatttggagaagtgccagaagaattctcattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

414

Amino Acids

43.91

Weight (kDa)

9.23

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23350 FvH4_6g44671
malus_domestica	MD07G1310100.v1.1
prunus_persica	Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1
pyrus_communis	pycom07g28220
rosa_chinensis	RchiOBHm_Chr1g0384481 RchiOBHm_Chr3g0484611
rosa_laevigata	RLG00000026038
rosa_multiflora	Rmu_co8409505.1_g000001 Rmu_sc0006005.1_g000002 Rmu_sc0027852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276670 Rroxscaffold_5G00378750 Rroxscaffold_7G00193860
rosa_rugosa	Rorug01G0448000 Rorug01G0448100 Rorug05G0567200
rosa_samantha	Rh1CG444500 Rh2DG337500 Rh2DG481000 Rh3AG228400 Rh7AG441300
rosa_wichuraiana	Rw0G003890 Rw1G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	757
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccII	CGCG	1 cut(s)	372
AciI	CCGC	4 cut(s)	37, 71, 173, 224
AclWI	GGATC	1 cut(s)	1061
AcoI	YGGCCR	1 cut(s)	922
AcsI	RAATTY	5 cut(s)	41, 109, 213, 237, 1232
AcuI	CTGAAG	1 cut(s)	810
AfiI	CCNNNNNNNGG	3 cut(s)	230, 331, 500
AgsI	TTSAA	9 cut(s)	115, 521, 526, 603, 812, 844, 1036, 1042, 1181
AjnI	CCWGG	5 cut(s)	760, 919, 924, 942, 1065
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
Alw26I	GTCTC	2 cut(s)	448, 498
AlwI	GGATC	1 cut(s)	1061
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	4 cut(s)	514, 661, 922, 988
ApeKI	GCWGC	5 cut(s)	27, 30, 548, 626, 929
ApoI	RAATTY	5 cut(s)	41, 109, 213, 237, 1232
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	638, 989
AsuHPI	GGTGA	2 cut(s)	187, 707
AvaII	GGWCC	1 cut(s)	638
BalI	TGGCCA	1 cut(s)	924
BanI	GGYRCC	1 cut(s)	757
BbvI	GCAGC	5 cut(s)	39, 42, 535, 613, 941
BccI	CCATC	2 cut(s)	323, 397
BciT130I	CCWGG	5 cut(s)	762, 921, 926, 944, 1067
BcoDI	GTCTC	2 cut(s)	448, 498
BfaI	CTAG	2 cut(s)	623, 1016
BfmI	CTRYAG	1 cut(s)	858
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 930
BlsI	GCNGC	6 cut(s)	29, 32, 225, 550, 628, 931
Bme1390I	CCNGG	5 cut(s)	762, 921, 926, 944, 1067
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	638, 989
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	5 cut(s)	762, 921, 926, 944, 1067
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	2 cut(s)	197, 1050
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 1016, 1046
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 331, 500
Bse1I	ACTGG	3 cut(s)	820, 851, 1105
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	5 cut(s)	762, 921, 926, 944, 1067
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	302, 1058, 1146
BseLI	CCNNNNNNNGG	3 cut(s)	230, 331, 500
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	3 cut(s)	820, 851, 1105
BseRI	GAGGAG	2 cut(s)	109, 1098
BseXI	GCAGC	5 cut(s)	39, 42, 535, 613, 941
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	4 cut(s)	516, 663, 924, 990
BshNI	GGYRCC	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	198, 1051
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	230, 331, 500
BsmAI	GTCTC	2 cut(s)	448, 498
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	4 cut(s)	516, 663, 924, 990
Bsp143I	GATC	2 cut(s)	748, 1053
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	4 cut(s)	37, 71, 173, 224
BspANI	GGCC	4 cut(s)	516, 663, 924, 990
BspCNI	CTCAG	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	1061
BspT107I	GGYRCC	1 cut(s)	757
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	3 cut(s)	820, 851, 1105
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	748, 1053
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	5 cut(s)	762, 921, 926, 944, 1067
Bst4CI	ACNGT	4 cut(s)	148, 162, 469, 1155
Bst6I	CTCTTC	2 cut(s)	70, 652
BstAPI	GCANNNNNTGC	2 cut(s)	149, 626
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	35, 915, 975
BstDEI	CTNAG	2 cut(s)	283, 595
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	3 cut(s)	302, 1058, 1146
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	751, 1056
BstMAI	GTCTC	2 cut(s)	448, 498
BstMBI	GATC	2 cut(s)	748, 1053
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 545, 626, 828
BstNI	CCWGG	5 cut(s)	762, 921, 926, 944, 1067
BstSCI	CCNGG	5 cut(s)	760, 919, 924, 942, 1065
BstSFI	CTRYAG	1 cut(s)	858
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	5 cut(s)	39, 42, 535, 613, 941
BstX2I	RGATCY	2 cut(s)	748, 1053
BstYI	RGATCY	2 cut(s)	748, 1053
BsuRI	GGCC	4 cut(s)	516, 663, 924, 990
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	8
BtsCI	GGATG	3 cut(s)	302, 1058, 1146
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	3 cut(s)	35, 915, 975
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	638, 989
CsiI	ACCWGGT	1 cut(s)	1065
CviAII	CATG	5 cut(s)	137, 307, 326, 449, 970
DdeI	CTNAG	2 cut(s)	283, 595
DpnI	GATC	2 cut(s)	750, 1055
DpnII	GATC	2 cut(s)	748, 1053
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	70, 652
EarI	CTCTTC	2 cut(s)	70, 652
Eco130I	CCWWGG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	810
EcoO109I	RGGNCCY	1 cut(s)	989
EcoRI	GAATTC	1 cut(s)	1232
EcoRII	CCWGG	5 cut(s)	760, 919, 924, 942, 1065
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	5 cut(s)	140, 310, 329, 452, 973
FalI	AAGNNNNNCTT	2 cut(s)	1184, 1216
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	5 cut(s)	136, 306, 325, 448, 969
FauI	CCCGC	2 cut(s)	30, 64
Fnu4HI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 930
FokI	GGATG	3 cut(s)	289, 1045, 1133
Fsp4HI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 930
FspBI	CTAG	2 cut(s)	623, 1016
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 930
HaeIII	GGCC	4 cut(s)	516, 663, 924, 990
HapII	CCGG	2 cut(s)	198, 1051
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	5 cut(s)	140, 310, 329, 452, 973
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	2 cut(s)	99, 911
HinfI	GANTC	7 cut(s)	6, 155, 452, 599, 698, 1127, 1174
HpaII	CCGG	2 cut(s)	198, 1051
HphI	GGTGA	2 cut(s)	187, 707
Hpy188I	TCNGA	5 cut(s)	14, 57, 598, 790, 1244
Hpy188III	TCNNGA	5 cut(s)	165, 449, 494, 636, 1181
HpyAV	CCTTC	5 cut(s)	601, 674, 785, 909, 1002
HpyCH4III	ACNGT	4 cut(s)	148, 162, 469, 1155
HpyCH4IV	ACGT	2 cut(s)	253, 379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 545, 626, 828
HpyF3I	CTNAG	2 cut(s)	283, 595
HpySE526I	ACGT	2 cut(s)	253, 379
Hsp92II	CATG	5 cut(s)	140, 310, 329, 452, 973
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	748, 1053
Lsp1109I	GCAGC	5 cut(s)	39, 42, 535, 613, 941
MabI	ACCWGGT	1 cut(s)	1065
MaeI	CTAG	2 cut(s)	623, 1016
MaeII	ACGT	2 cut(s)	253, 379
MaeIII	GTNAC	3 cut(s)	193, 286, 402
MalI	GATC	2 cut(s)	750, 1055
MboI	GATC	2 cut(s)	748, 1053
MboII	GAAGA	7 cut(s)	87, 558, 669, 737, 777, 1169, 1241
MflI	RGATCY	2 cut(s)	748, 1053
MlsI	TGGCCA	1 cut(s)	924
MluCI	AATT	8 cut(s)	41, 58, 84, 109, 213, 237, 521, 1232
MluNI	TGGCCA	1 cut(s)	924
MmeI	TCCRAC	1 cut(s)	990
MnlI	CCTC	6 cut(s)	20, 71, 130, 179, 653, 1076
Mox20I	TGGCCA	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	924
MseI	TTAA	4 cut(s)	242, 464, 735, 1071
MslI	CAYNNNNRTG	1 cut(s)	737
Msp20I	TGGCCA	1 cut(s)	924
MspI	CCGG	2 cut(s)	198, 1051
MspR9I	CCNGG	5 cut(s)	762, 921, 926, 944, 1067
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	5 cut(s)	762, 921, 926, 944, 1067
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	149, 545, 626, 828
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	748, 1053
NlaIII	CATG	5 cut(s)	140, 310, 329, 452, 973
NlaIV	GGNNCC	1 cut(s)	759
NmuCI	GTSAC	2 cut(s)	193, 402
PagI	TCATGA	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	6 cut(s)	155, 452, 599, 698, 1127, 1174
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	6 cut(s)	29, 32, 225, 550, 628, 931
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	5 cut(s)	760, 919, 924, 942, 1065
PspGI	CCWGG	5 cut(s)	760, 919, 924, 942, 1065
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	2 cut(s)	638, 989
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	2 cut(s)	748, 1053
RseI	CAYNNNNRTG	1 cut(s)	737
SaqAI	TTAA	4 cut(s)	242, 464, 735, 1071
SatI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 930
Sau3AI	GATC	2 cut(s)	748, 1053
Sau96I	GGNCC	2 cut(s)	638, 989
ScrFI	CCNGG	5 cut(s)	762, 921, 926, 944, 1067
SexAI	ACCWGGT	1 cut(s)	1065
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	737
Sse9I	AATT	8 cut(s)	41, 58, 84, 109, 213, 237, 521, 1232
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	4 cut(s)	37, 71, 173, 224
SspMI	CTAG	2 cut(s)	623, 1016
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	5 cut(s)	760, 919, 924, 942, 1065
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	4 cut(s)	148, 162, 469, 1155
TaiI	ACGT	2 cut(s)	256, 382
TasI	AATT	8 cut(s)	41, 58, 84, 109, 213, 237, 521, 1232
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	6 cut(s)	155, 452, 599, 698, 1127, 1174
Tru1I	TTAA	4 cut(s)	242, 464, 735, 1071
Tru9I	TTAA	4 cut(s)	242, 464, 735, 1071
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	193, 402
TseI	GCWGC	5 cut(s)	27, 30, 548, 626, 929
Tsp45I	GTSAC	2 cut(s)	193, 402
TspDTI	ATGAA	4 cut(s)	11, 333, 958, 984
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	5 cut(s)	41, 109, 213, 237, 1232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1166
XspI	CTAG	2 cut(s)	623, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.